CX288700

Overview
NameCX288700
Unique NameCX288700
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length580
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX288700_ssr483 microsatellite CX288700_ssr483:483..500. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX288700 vs. ExPASy Swiss-Prot
Match: APX5_ARATH (L-ascorbate peroxidase 5, peroxisomal OS=Arabidopsis thaliana GN=APX5 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 3.895e-15
Identity = 49/118 (41.53%), Postives = 55/118 (46.61%), Query Frame = -1
Query:  101 WHSAGTYDVNTKTGGPFGTIRHPDELAHEANNGLDIAVRLLEPIKQQFPILSYADFYQVIIIYIQLLTTENDLLYDHFLWITLDW*IDHGLCFIFLKLAGVVAVEVTGGPEIPFHPGR 454
            WH AGTYD   KTGG  G+IR  +EL    N GL+ AV   E +K + P +SYAD YQ                                       LAGVVAVEVTGGP IPF PGR
Sbjct:   38 WHDAGTYDAKKKTGGANGSIRFKEELNRPHNKGLEKAVAFCEEVKAKHPRVSYADLYQ---------------------------------------LAGVVAVEVTGGPAIPFTPGR 116          
BLAST of CX288700 vs. ExPASy Swiss-Prot
Match: CCPR2_YARLI (Putative cytochrome c peroxidase, mitochondrial OS=Yarrowia lipolytica GN=YALI0D04268g PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.363e-12
Identity = 46/119 (38.66%), Postives = 59/119 (49.58%), Query Frame = -1
Query:  101 WHSAGTYDVNTKTGGPFG-TIRHPDELAHEANNGLDIAVRLLEPIKQQFPILSYADFYQVIIIYIQLLTTENDLLYDHFLWITLDW*IDHGLCFIFLKLAGVVAVEVTGGPEIPFHPGR 454
            WH++GTYD  T TGG  G T+R+  E   EANNGL+ A + LEPIK +FP ++YAD                       LW                 LAGVVA+E   GP++P+ PGR
Sbjct:   36 WHASGTYDKATGTGGSNGATMRYMKEAKDEANNGLENARQFLEPIKAKFPWITYAD-----------------------LW----------------TLAGVVAIEEMDGPKVPWKPGR 115          
BLAST of CX288700 vs. ExPASy Swiss-Prot
Match: CCPR_CRYNE (Cytochrome c peroxidase, mitochondrial OS=Cryptococcus neoformans GN=CCP1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.000e-11
Identity = 44/119 (36.97%), Postives = 54/119 (45.38%), Query Frame = -1
Query:  101 WHSAGTYDVNTKTGGP-FGTIRHPDELAHEANNGLDIAVRLLEPIKQQFPILSYADFYQVIIIYIQLLTTENDLLYDHFLWITLDW*IDHGLCFIFLKLAGVVAVEVTGGPEIPFHPGR 454
            WHS+GTY+    TGG  F T+R   E  H ANNGL +A   +E IKQ+FP +SY D                       LW                 L GV AV+ +GGP IP+ PGR
Sbjct:  137 WHSSGTYNKEDGTGGSNFATMRFKPEAEHSANNGLHVAREHMEKIKQEFPWISYGD-----------------------LW----------------TLGGVCAVQESGGPTIPWRPGR 216          
BLAST of CX288700 vs. ExPASy Swiss-Prot
Match: CCPR_ASPFU (Cytochrome c peroxidase, mitochondrial OS=Aspergillus fumigatus GN=ccp1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.000e-11
Identity = 46/119 (38.66%), Postives = 54/119 (45.38%), Query Frame = -1
Query:  101 WHSAGTYDVNTKTGGPFG-TIRHPDELAHEANNGLDIAVRLLEPIKQQFPILSYADFYQVIIIYIQLLTTENDLLYDHFLWITLDW*IDHGLCFIFLKLAGVVAVEVTGGPEIPFHPGR 454
            WH++GTYD  T TGG  G T+R   E  H AN GL IA   LEPIK QFP +SY+D                       LW                 LAG  A++  GGP IP+ PGR
Sbjct:  126 WHASGTYDKETGTGGSNGATMRFAPESDHGANAGLKIARDFLEPIKAQFPWISYSD-----------------------LW----------------TLAGACAIQELGGPTIPWRPGR 205          
BLAST of CX288700 vs. ExPASy Swiss-Prot
Match: CCPR2_CANAL (Putative heme-binding peroxidase OS=Candida albicans GN=CCP2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.456e-11
Identity = 46/119 (38.66%), Postives = 53/119 (44.54%), Query Frame = -1
Query:  101 WHSAGTYDVNTKTGGPFG-TIRHPDELAHEANNGLDIAVRLLEPIKQQFPILSYADFYQVIIIYIQLLTTENDLLYDHFLWITLDW*IDHGLCFIFLKLAGVVAVEVTGGPEIPFHPGR 454
            WH   TYDV T TGG  G T+R   E+  E N GLDIA   LEPIKQ++P +SYAD                       LW                 LAG VA+E  GGP I +  GR
Sbjct:   60 WHCCATYDVTTNTGGSNGATMRFVPEITDEGNYGLDIARAALEPIKQRYPAISYAD-----------------------LW----------------TLAGKVAIEYMGGPTIIWKSGR 139          
The following BLAST results are available for this feature:
BLAST of CX288700 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
APX5_ARATH3.895e-1541.53L-ascorbate peroxidase 5, peroxisomal OS=Arabidops... [more]
CCPR2_YARLI2.363e-1238.66Putative cytochrome c peroxidase, mitochondrial OS... [more]
CCPR_CRYNE2.000e-1136.97Cytochrome c peroxidase, mitochondrial OS=Cryptoco... [more]
CCPR_ASPFU2.000e-1138.66Cytochrome c peroxidase, mitochondrial OS=Aspergil... [more]
CCPR2_CANAL4.456e-1138.66Putative heme-binding peroxidase OS=Candida albica... [more]

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Properties
Property NameValue
Genbank descriptionC02003D06SK IF1 Citrus clementina cDNA clone C02003D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288700 ID=CX288700; Name=CX288700; organism=Citrus clementina; type=EST; length=580bp
TGGGAATGTACAAAAGCTACAGCTATGTTTTACAGATGAACTTTTGCAAC
AAGAAATCAATTCTAATTTAGAGAACATGCATATGAAAAGCCCTCACCGG
TCTTCCAGGGTGGAAAGGTATTTCAGGCCCTCCGGTAACTTCAACGGCAA
CAACTCCAGCCAACTTCAAGAAAATAAAACACAAACCATGGTCAATTCAC
CAATCCAAAGTAATCCATAGAAAGTGATCATAAAGCAAATCATTTTCTGT
AGTCAACAGTTGGATATAAATAATAATTACCTGATAGAAATCAGCGTAGG
ACAAGATAGGAAACTGCTGCTTGATGGGCTCCAAGAGCCTGACAGCAATA
TCAAGACCATTGTTAGCCTCATGAGCAAGCTCATCTGGGTGCCTGATCGT
CCCAAAAGGCCCTCCTGTCTTCGTGTTCACGTCATAAGTCCCCGCTGAGT
GCCATCTGCATATGTGCAGCCCACAAACTTACATATATATATATATATAT
ACACATCTTGATTGTGATCTAATACTCATCATCATGCAGATTAATAACGC
ATCAACGATGGTCACTGAAAGTGATCTTAA
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