CX288704

Overview
NameCX288704
Unique NameCX288704
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length589
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_IPOBA (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN=SODCC PE=2 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 5.343e-44
Identity = 88/152 (57.89%), Postives = 102/152 (67.11%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 542
            VKAVA + S  G  G + F QEGDGPTT+ G +  L  G HGFH+H  GD  + C STG HFNP  K+HG P D  RHAGDLGNI VG DG A   I DK   IPL G NS+IGR+VV+H   DDLGK G+  SK  GNAG ++ACG+IGLQ
Sbjct:    2 VKAVAVLSSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPGDDNRHAGDLGNITVGEDGTASFTITDKQ--IPLTGANSVIGRAVVVHGDPDDLGKGGHELSKSTGNAGGRVACGIIGLQ 151          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC2_ORYSJ (Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa subsp. japonica GN=SODCC2 PE=1 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 6.978e-44
Identity = 86/152 (56.58%), Postives = 105/152 (69.08%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 542
            VKAVA + S  G KG + F QEGDGPT++ G++  L  G HGFH+H  GD  + C STG HFNP  K+HG P+D  RHAGDLGNI  G DG A +N+ D    IPL G +SIIGR+VV+H   DDLGK G+  SK  GNAG ++ACG+IGLQ
Sbjct:    2 VKAVAVLASSEGVKGTIFFSQEGDGPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPTGKEHGAPQDENRHAGDLGNITAGADGVANVNVSDSQ--IPLTGAHSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQ 151          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC1_MESCR (Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum GN=SODCC.1 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 6.978e-44
Identity = 87/152 (57.24%), Postives = 102/152 (67.11%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 542
            VKAV  + S  G  G + F QEG GPTT+ G +  L  G HGFH+H  GD  + C STG HFNP  K+HG PED  RHAGDLGNI VG DG A   I+D    IPL GPNSI+GR+VV+H   DDLG+ G+  SK  GNAG ++ACGVIGLQ
Sbjct:    2 VKAVVVLSSSEGVSGTVQFTQEGSGPTTVTGNVSGLRPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDETRHAGDLGNITVGDDGTATFTIIDSQ--IPLTGPNSIVGRAVVVHADPDDLGRGGHELSKATGNAGGRVACGVIGLQ 151          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_PEA (Superoxide dismutase [Cu-Zn] OS=Pisum sativum GN=SODCC PE=2 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 9.113e-44
Identity = 89/152 (58.55%), Postives = 103/152 (67.76%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 542
            VKAVA + +     G ++F QEG+GPTT+ GTL  L  G HGFHIH  GD  + C STG HFNP  K+HG PED  RHAGDLGNI VG DG     I D H  IPL G NSIIGR+VV+H   DDLGK G+  SK  GNAG ++ACG+IGLQ
Sbjct:    2 VKAVAVLSNSNEVSGTINFSQEGNGPTTVTGTLAGLKPGLHGFHIHALGDTTNGCISTGPHFNPNGKEHGAPEDETRHAGDLGNINVGDDGTVSFTITDNH--IPLTGTNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQ 151          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC2_MAIZE (Superoxide dismutase [Cu-Zn] 2 OS=Zea mays GN=SODCC.1 PE=2 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 9.113e-44
Identity = 87/152 (57.24%), Postives = 105/152 (69.08%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 542
            VKAVA V++    KG + F QEGDGPTT+ G++  L  G HGFH+H  GD  + C STG HFNP  K+HG PED  RHAGDLGN+  G DG   +NI D    IPL GP+SIIGR+VV+H   DDLGK G+  SK  GNAG ++ACG+IGLQ
Sbjct:    2 VKAVA-VLAGTDVKGTIFFSQEGDGPTTVTGSISGLKPGLHGFHVHALGDTTNGCMSTGPHFNPVGKEHGAPEDEDRHAGDLGNVTAGEDGVVNVNITDSQ--IPLAGPHSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQ 150          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_ZANAE (Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethiopica GN=SODCC PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.030e-43
Identity = 86/153 (56.21%), Postives = 103/153 (67.32%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQA 545
            VKAVA +    G +G + F QEG+GPTTI G+L  L  G HGFH+H  GD  + C STG HFNP  K+HG PED  RHAGDLGN+ VG DG     + D    IPL G NS++GR+VV+H   DDLGK G+  SK  GNAG ++ACGVIGLQA
Sbjct:    2 VKAVAVLTGSEGVQGTVFFAQEGEGPTTITGSLSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDGNRHAGDLGNVTVGEDGTVNFTVTDSQ--IPLTGLNSVVGRAVVVHADSDDLGKGGHELSKTTGNAGGRLACGVIGLQA 152          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_SOYBN (Superoxide dismutase [Cu-Zn] OS=Glycine max GN=SOD1 PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.030e-43
Identity = 87/152 (57.24%), Postives = 103/152 (67.76%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 542
            VKAVA + S  G  G + F QEG+GPTT+ G+L  L  G HGFH+H  GD  + C STG HFNP   +HG PED  RHAGDLGN+ VG DG    +I D    IPL GPNSIIGR+VV+H   DDLGK G+  SK  GNAG ++ACG+IGLQ
Sbjct:    2 VKAVAVLGSSEGVTGTIFFTQEGNGPTTVTGSLAGLKPGLHGFHVHALGDTTNGCLSTGAHFNPNNNEHGAPEDENRHAGDLGNVNVGDDGTVSFSITDSQ--IPLTGPNSIIGRAVVVHADSDDLGKGGHELSKTTGNAGGRVACGIIGLQ 151          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC2_SOLLC (Superoxide dismutase [Cu-Zn] 2 OS=Solanum lycopersicum GN=SODCC.5 PE=3 SV=3)

HSP 1 Score: 175.252 bits (443), Expect = 2.030e-43
Identity = 87/152 (57.24%), Postives = 102/152 (67.11%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 542
            VKAVA + S  G  G + F Q+G  PTT+ G +  L  G HGFH+H  GD  + C STG H+NP  K+HG PED +RHAGDLGNI VG DG A   I DK   IPL GP SIIGR+VV+H   DDLGK G+  SK  GNAG +IACG+IGLQ
Sbjct:    2 VKAVAVLNSSEGVSGTILFTQDGAAPTTVNGNISGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTITDKQ--IPLTGPQSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRIACGIIGLQ 151          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_SOLCS (Superoxide dismutase [Cu-Zn] OS=Solidago canadensis var. scabra GN=SODCC PE=2 SV=3)

HSP 1 Score: 173.711 bits (439), Expect = 5.907e-43
Identity = 88/153 (57.52%), Postives = 104/153 (67.97%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGDG-PTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 542
            VKAVA + S  G  G + F QE +G PTT+ G L  L  G HGFH+H  GD  + C STG H+NP  KDHG P+D  RHAGDLGN+ VG DG AK  IVDK   IPL+G  SIIGR+VV+H   DDLGK G+  SK  GNAG ++ACG+IGLQ
Sbjct:    2 VKAVAVLSSSEGVSGTIFFSQEAEGAPTTVTGDLSGLKPGPHGFHVHALGDTTNGCMSTGPHYNPHGKDHGAPDDEHRHAGDLGNVTVGEDGTAKFTIVDKQ--IPLIGAQSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQ 152          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_PINSY (Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris GN=SODCC PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.719e-42
Identity = 83/152 (54.61%), Postives = 103/152 (67.76%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 542
            +KAV  +      KG++ F QEGDGPTT+ G +  LS G HGFH+H  GD  + C STG HFNP  K+HG P D  RHAGDLGN+ VG DG  + +I D    IPL GP+SI+GR+VV+H   DDLGK G+  SK  GNAG ++ACGV+GLQ
Sbjct:    4 LKAVVVLNGAADVKGVVQFTQEGDGPTTVTGKISGLSPGLHGFHVHALGDTTNGCMSTGPHFNPLGKEHGAPTDDNRHAGDLGNVTVGTDGTVEFSITDSQ--IPLSGPHSIVGRAVVVHADPDDLGKGGHELSKSTGNAGGRLACGVVGLQ 153          
The following BLAST results are available for this feature:
BLAST of CX288704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODC_IPOBA5.343e-4457.89Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN... [more]
SODC2_ORYSJ6.978e-4456.58Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa sub... [more]
SODC1_MESCR6.978e-4457.24Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum... [more]
SODC_PEA9.113e-4458.55Superoxide dismutase [Cu-Zn] OS=Pisum sativum GN=S... [more]
SODC2_MAIZE9.113e-4457.24Superoxide dismutase [Cu-Zn] 2 OS=Zea mays GN=SODC... [more]
SODC_ZANAE2.030e-4356.21Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethi... [more]
SODC_SOYBN2.030e-4357.24Superoxide dismutase [Cu-Zn] OS=Glycine max GN=SOD... [more]
SODC2_SOLLC2.030e-4357.24Superoxide dismutase [Cu-Zn] 2 OS=Solanum lycopers... [more]
SODC_SOLCS5.907e-4357.52Superoxide dismutase [Cu-Zn] OS=Solidago canadensi... [more]
SODC_PINSY1.719e-4254.61Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris G... [more]

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Properties
Property NameValue
Genbank descriptionC02003D12SK IF1 Citrus clementina cDNA clone C02003D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288704 ID=CX288704; Name=CX288704; organism=Citrus clementina; type=EST; length=589bp
AGAGAACGGCTTCAATCAAGTTGGTAGCCCTTTTAGCTGTTTTATTCTGT
TTTGTCAATGCAACCAAATCAAGAGGAGTCCCAACGGTGAAAGCAGTTGC
TTATGTTATTAGCAAATGGGGTCCCAAGGGAATTCTCCATTTTAAACAGG
AAGGAGATGGCCCAACAACTATAAAGGGGACACTCTATTACCTTTCGCAG
GGTGCTCACGGATTTCATATACACGTCTACGGGGACATGGCCCATTTCTG
CCAGTCAACTGGCGATCACTTTAACCCATTTCGCAAAGATCATGGTGGCC
CAGAGGATTGGATTCGTCACGCCGGTGATTTAGGAAATATCTATGTTGGT
TTTGATGGTAAAGCCAAGATCAACATTGTTGACAAGCATAAGCTGATTCC
TCTTGTTGGGCCAAATTCCATTATCGGAAGGTCTGTCGTGATACACGATA
AGCATGATGATCTTGGCAAGGTTGGAAATTACCACAGCAAAAAGAATGGA
AATGCTGGTGACAAAATAGCTTGTGGCGTCATTGGTCTCCAAGCATGAAT
GGTCTCGGTTTGGACTCTATATGATAAATACTTTACCTG
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