CX288704

Overview
NameCX288704
Unique NameCX288704
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length589
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_CANAL (Superoxide dismutase [Cu-Zn] OS=Candida albicans GN=SOD1 PE=3 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 1.278e-29
Identity = 76/153 (49.67%), Postives = 92/153 (60.13%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGDG-PTTIKGTLYYLSQGA-HGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            VKAVA V      +G +HF+QE +  PTTI   +      A  GFHIH +GD  + C S G HFNPF K HG PED  RH GDLGNI    +G AK    D   LI L+G +SI+GR++V+H   DD GK G   SK  G+AG + ACGVIGL
Sbjct:    2 VKAVAVVRGDSKVQGTVHFEQESESAPTTISWEIEGNDPNALRGFHIHQFGDNTNGCTSAGPHFNPFGKQHGAPEDDERHVGDLGNISTDGNGVAKGTKQD--LLIKLIGKDSILGRTIVVHAGTDDYGKGGFEDSKTTGHAGARPACGVIGL 152          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_ASPNG (Superoxide dismutase [Cu-Zn] OS=Aspergillus niger GN=sodC PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.278e-29
Identity = 70/155 (45.16%), Postives = 93/155 (60.00%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGDG-PTTIKGTLY-YLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQA 545
            VKAVA +       G + F+Q  +  PTTI   +  + +    GFH+H +GD  + C S G HFNP+ K HG PED  RH GDLGN     +G A  +  D  KL+ L+G  S++GR++V+H   DDLG+ GN  SKK GNAG + ACGVIG+ A
Sbjct:    2 VKAVAVIRGDSKVSGTVTFEQANENTPTTISWNITGHDANAERGFHVHQFGDNTNGCTSAGPHFNPYGKTHGAPEDDERHVGDLGNFKTDAEGNAVGSKQD--KLVKLIGAESVLGRTLVVHAGTDDLGRGGNEESKKTGNAGPRPACGVIGIAA 154          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_BOTFU (Superoxide dismutase [Cu-Zn] OS=Botryotinia fuckeliana GN=sod1 PE=3 SV=3)

HSP 1 Score: 129.028 bits (323), Expect = 1.669e-29
Identity = 73/155 (47.10%), Postives = 90/155 (58.06%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQ-EGDGPTTIKGTLYYLSQGAH-GFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQA 545
            VKAVA V       G + F+Q E + PTTI   +      A  G H+H +GD  + C S G HFNP  + HG P D +RH GDLGN      G A  ++ D H  I L+GP S+IGR+VV+H   DDLGK  N  SKK GNAG + ACGVIG+ A
Sbjct:    2 VKAVATVRGDSKISGTVTFEQSEENSPTTITWNITGNDANAERGMHVHQFGDNTNGCTSAGPHFNPHGQTHGAPTDEVRHVGDLGNFKTDAQGNATGSVQDSH--IKLIGPLSVIGRTVVVHSGTDDLGKGENEESKKTGNAGTRPACGVIGIAA 154          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_ASPFU (Superoxide dismutase [Cu-Zn] OS=Aspergillus fumigatus GN=sodC PE=2 SV=3)

HSP 1 Score: 127.487 bits (319), Expect = 4.855e-29
Identity = 71/155 (45.81%), Postives = 93/155 (60.00%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQ-EGDGPTTIKGTLYYLSQGA-HGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQA 545
            VKAVA +       G + F+Q + + PTT+   +      A  GFH+H +GD  + C S G HFNP+ K HG PED  RH GDLGN     +G A  +  D  KLI L+G  S++GR++V+H   DDLG+ GN  SKK GNAG + ACGVIG+ A
Sbjct:    2 VKAVAVLRGDSKITGTVTFEQADENSPTTVSWNIKGNDPNAKRGFHVHQFGDNTNGCTSAGPHFNPYGKTHGAPEDSERHVGDLGNFETDAEGNAVGSKQD--KLIKLIGAESVLGRTLVVHAGTDDLGRGGNEESKKTGNAGARPACGVIGIAA 154          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_EMENI (Superoxide dismutase [Cu-Zn] OS=Emericella nidulans GN=sodA PE=1 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 1.082e-28
Identity = 70/155 (45.16%), Postives = 92/155 (59.35%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGDGP-TTIKGTLYYLSQGAH-GFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQA 545
            VKAVA +       G + F+Q  +   TT+   +      A  GFHIH +GD  + C S G HFNPF K HG PED +RH GDLGN     +G +K +  D  KLI L+G  S++GR++V+H   DDLG+  +  SKK GNAG + ACGVIG+ A
Sbjct:    2 VKAVAVLRGDSKVSGTVTFEQADENSNTTVSWNITGNDPNAERGFHIHQFGDNTNGCTSAGPHFNPFGKTHGAPEDEVRHVGDLGNFKTDAEGNSKGSKTD--KLIKLIGAESVLGRTLVVHAGTDDLGRGDSEESKKTGNAGARPACGVIGIAA 154          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_PODAN (Superoxide dismutase [Cu-Zn] OS=Podospora anserina GN=SOD1 PE=3 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 1.412e-28
Identity = 73/155 (47.10%), Postives = 89/155 (57.42%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGD-GPTTIKGTLY-YLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQA 545
            VKAVA V       G + F+QE + GPTTI   +  + +    G HIH +GD  + C S G HFNP  K HG   D  RH GDLGNI     G +K  + D   LI L+GP S+IGR+VV+H   DDLGK     S K GNAG + ACGVIG+ A
Sbjct:    2 VKAVAVVRGDSKVSGSVVFEQETENGPTTITWDITGHDANAKRGMHIHTFGDNTNGCTSAGPHFNPHGKTHGNRTDENRHVGDLGNIETDAQGNSKGTVTD--NLIKLIGPESVIGRTVVVHAGTDDLGKGDTEESLKTGNAGARPACGVIGISA 154          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_ASPOR (Superoxide dismutase [Cu-Zn] OS=Aspergillus oryzae GN=sodC PE=3 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 4.110e-28
Identity = 69/155 (44.52%), Postives = 93/155 (60.00%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQ-EGDGPTTIKGTLY-YLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQA 545
            VKAVA +       G + F+Q + + PTT+   +  + +     FH+H +GD  + C S G HFNPF K+HG PED  RH GDLGN     +G A  +  D  KLI L+G  S++GR++VIH   DDLG+  +  SKK GNAG + ACGVIG+ A
Sbjct:    2 VKAVAVLRGDSKISGTVTFEQADANAPTTVSWNITGHDANAERAFHVHQFGDNTNGCTSAGPHFNPFGKEHGAPEDENRHVGDLGNFKTDAEGNAVGSKQD--KLIKLIGAESVLGRTLVIHAGTDDLGRSEHPESKKTGNAGARPACGVIGIAA 154          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: CCS_RAT (Copper chaperone for superoxide dismutase OS=Rattus norvegicus GN=Ccs PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.155e-28
Identity = 63/151 (41.72%), Postives = 86/151 (56.95%), Query Frame = 3
Query:   93 AVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQA 545
            AVA +      +G++ F Q       I+GT+  L  G HG H+H YGD+   C S GDHFNP    HGGP+D  RH GDLGN++    G+A   I DK   +       +IGRS+V+ +  DDLG+ G+  SK  GN+G ++ACG+I   A
Sbjct:   89 AVAIMEGSGTVQGVVRFLQLSSELCLIEGTIDGLEPGLHGLHVHQYGDLTKDCSSCGDHFNPDGASHGGPQDTDRHRGDLGNVHAEASGRATFRIEDKQLKV-----WDVIGRSLVVDEGEDDLGRGGHPLSKVTGNSGKRLACGIIARSA 234          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_NPVOP (Putative superoxide dismutase [Cu-Zn] OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=SOD PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.196e-27
Identity = 67/155 (43.23%), Postives = 94/155 (60.65%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEG-DGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNI-YVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQA 545
            +KA+  V  +    G ++FKQ   D P +I G L  L +G HGFH+H +GD ++ C S G+HFNP R+ HG P+   RH GDLGN+   G      I++ D   +I L GP SI+GRS+V+H   DDLG   +  SK  GN+G ++ CG+IG+ A
Sbjct:    1 MKAICIVAGE--ASGRIYFKQGAPDEPVSITGYLLNLPRGLHGFHVHEFGDTSNGCTSAGEHFNPTRQRHGAPDAAERHVGDLGNVRSAGCTALTAIHMSD--NVITLFGPLSILGRSLVVHTDRDDLGLGEHPLSKTTGNSGGRLGCGIIGVCA 151          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODE_CAEEL (Extracellular superoxide dismutase [Cu-Zn] OS=Caenorhabditis elegans GN=sod-4 PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 2.040e-27
Identity = 69/156 (44.23%), Postives = 88/156 (56.41%), Query Frame = 3
Query:   87 VKAVAYVISKWGPK------GILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIG 536
            ++A AY+      K      G + F Q G     + G++  L+ G HGFHIH  GD  + C S G H+NP +  HG P+D  RH GDLGNI     G   I++ D   L  L G  SIIGRSVVIH+K DDLG+  +  SK  GNAG ++ACG IG
Sbjct:   22 IRARAYIFKAEAGKIPTELIGTIDFDQSGSF-LKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHGAPDDSNRHIGDLGNIESPASGDTLISVSD--SLASLSGQYSIIGRSVVIHEKTDDLGRGTSDQSKTTGNAGSRLACGTIG 174          
The following BLAST results are available for this feature:
BLAST of CX288704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODC_CANAL1.278e-2949.67Superoxide dismutase [Cu-Zn] OS=Candida albicans G... [more]
SODC_ASPNG1.278e-2945.16Superoxide dismutase [Cu-Zn] OS=Aspergillus niger ... [more]
SODC_BOTFU1.669e-2947.10Superoxide dismutase [Cu-Zn] OS=Botryotinia fuckel... [more]
SODC_ASPFU4.855e-2945.81Superoxide dismutase [Cu-Zn] OS=Aspergillus fumiga... [more]
SODC_EMENI1.082e-2845.16Superoxide dismutase [Cu-Zn] OS=Emericella nidulan... [more]
SODC_PODAN1.412e-2847.10Superoxide dismutase [Cu-Zn] OS=Podospora anserina... [more]
SODC_ASPOR4.110e-2844.52Superoxide dismutase [Cu-Zn] OS=Aspergillus oryzae... [more]
CCS_RAT9.155e-2841.72Copper chaperone for superoxide dismutase OS=Rattu... [more]
SODC_NPVOP1.196e-2743.23Putative superoxide dismutase [Cu-Zn] OS=Orgyia ps... [more]
SODE_CAEEL2.040e-2744.23Extracellular superoxide dismutase [Cu-Zn] OS=Caen... [more]

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Properties
Property NameValue
Genbank descriptionC02003D12SK IF1 Citrus clementina cDNA clone C02003D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288704 ID=CX288704; Name=CX288704; organism=Citrus clementina; type=EST; length=589bp
AGAGAACGGCTTCAATCAAGTTGGTAGCCCTTTTAGCTGTTTTATTCTGT
TTTGTCAATGCAACCAAATCAAGAGGAGTCCCAACGGTGAAAGCAGTTGC
TTATGTTATTAGCAAATGGGGTCCCAAGGGAATTCTCCATTTTAAACAGG
AAGGAGATGGCCCAACAACTATAAAGGGGACACTCTATTACCTTTCGCAG
GGTGCTCACGGATTTCATATACACGTCTACGGGGACATGGCCCATTTCTG
CCAGTCAACTGGCGATCACTTTAACCCATTTCGCAAAGATCATGGTGGCC
CAGAGGATTGGATTCGTCACGCCGGTGATTTAGGAAATATCTATGTTGGT
TTTGATGGTAAAGCCAAGATCAACATTGTTGACAAGCATAAGCTGATTCC
TCTTGTTGGGCCAAATTCCATTATCGGAAGGTCTGTCGTGATACACGATA
AGCATGATGATCTTGGCAAGGTTGGAAATTACCACAGCAAAAAGAATGGA
AATGCTGGTGACAAAATAGCTTGTGGCGTCATTGGTCTCCAAGCATGAAT
GGTCTCGGTTTGGACTCTATATGATAAATACTTTACCTG
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