CX288704

Overview
NameCX288704
Unique NameCX288704
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length589
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: CCS_PIG (Copper chaperone for superoxide dismutase OS=Sus scrofa GN=CCS PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.664e-27
Identity = 63/154 (40.91%), Postives = 91/154 (59.09%), Query Frame = 3
Query:   87 VKAVAYVISKWGP-KGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQA 545
            ++A   ++   GP +G++ F Q       I+GT+  L  G HG H+H +GD+   C S GDHFNP    HGGP+D  RH GDLGN+    DG+A   + D+     L+    +IGRS+VI +  DDLG+ G+  SK  GN+G+++ACG+I   A
Sbjct:   86 LEAAVAILGGSGPVQGVVRFLQLTPERCLIEGTIDGLKPGLHGLHVHQFGDLTRNCNSCGDHFNPDGMSHGGPQDSDRHRGDLGNVCADADGRAVFRMEDE-----LLKVWDVIGRSLVIDEGEDDLGRGGHPLSKITGNSGERLACGIIARSA 234          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_ASPJA (Superoxide dismutase [Cu-Zn] (Fragment) OS=Aspergillus japonicus GN=sodC PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.479e-27
Identity = 61/114 (53.51%), Postives = 74/114 (64.91%), Query Frame = 3
Query:  207 HGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAG---DKIACGVIGL 539
            HGFH+H  GD  + C STG HFNP  K+HG P+D  RHAGDLGNI  G DG A +N+ D    IPL G +SIIGR+VV+H   DDLGK G+  SK  GN+    D  A G+ G+
Sbjct:    8 HGFHVHALGDTTNGCMSTGPHFNPTGKEHGAPQDENRHAGDLGNITAGADGVANVNVSDSQ--IPLTGAHSIIGRAVVVHADPDDLGKGGHELSKTTGNSNSSMDSCAHGIQGI 119          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_ASPFL (Superoxide dismutase [Cu-Zn] OS=Aspergillus flavus GN=sodC PE=3 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 3.479e-27
Identity = 70/155 (45.16%), Postives = 93/155 (60.00%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQ-EGDGPTTIKGTLY-YLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQA 545
            VKAVA V       G + F+Q + + PTT+   +  + +     FH+H +GD  + C S G HFNPF K+HG PED  RH GDLGN     +G A  +  D  KLI L+G  S++GR++VIH   DDLG+  +  SKK GNAG + ACGVIG+ A
Sbjct:    2 VKAVA-VRGDSKISGTVTFEQADANAPTTVSWNITGHDANAERAFHVHQFGDNTNGCTSAGPHFNPFGKEHGAPEDENRHVGDLGNFKTDAEGNAVGSKQD--KLIKLIGAESVLGRTLVIHAGTDDLGRSEHPESKKTGNAGARPACGVIGIAA 153          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: CCS_MOUSE (Copper chaperone for superoxide dismutase OS=Mus musculus GN=Ccs PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.544e-27
Identity = 64/151 (42.38%), Postives = 85/151 (56.29%), Query Frame = 3
Query:   93 AVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQA 545
            AVA +      +G++ F Q       I+GT+  L  G HG H+H YGD+   C S GDHFNP    HGGP+D  RH GDLGN+     G+A   I DK   +       +IGRS+VI +  DDLG+ G+  SK  GN+G ++ACG+I   A
Sbjct:   89 AVAILEGCGSIQGVVRFLQLSSELCLIEGTIDGLEPGLHGLHVHQYGDLTRDCNSCGDHFNPDGASHGGPQDTDRHRGDLGNVRAEAGGRATFRIEDKQLKV-----WDVIGRSLVIDEGEDDLGRGGHPLSKITGNSGKRLACGIIARSA 234          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: CCS_HUMAN (Copper chaperone for superoxide dismutase OS=Homo sapiens GN=CCS PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.255e-26
Identity = 61/151 (40.40%), Postives = 88/151 (58.28%), Query Frame = 3
Query:   93 AVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQA 545
            AVA +      +G++ F Q       I+GT+  L  G HG H+H YGD+ + C S G+HFNP    HGGP+D  RH GDLGN+    DG+A   + D+   +       +IGRS++I +  DDLG+ G+  SK  GN+G+++ACG+I   A
Sbjct:   89 AVAILGGPGTVQGVVRFLQLTPERCLIEGTIDGLEPGLHGLHVHQYGDLTNNCNSCGNHFNPDGASHGGPQDSDRHRGDLGNVRADADGRAIFRMEDEQLKV-----WDVIGRSLIIDEGEDDLGRGGHPLSKITGNSGERLACGIIARSA 234          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODE_HAECO (Extracellular superoxide dismutase [Cu-Zn] OS=Haemonchus contortus GN=SOD PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.024e-26
Identity = 65/139 (46.76%), Postives = 84/139 (60.43%), Query Frame = 3
Query:  129 GILHFKQEGDGPTTIK--GTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            GI+   Q G   T +K  G++  L  G HGFHIH  GD+ + C + G HFNP +  HG PED  RH GDLGNI     G   I I D   +I L G +++IGR++VIH   DDLG+  +  SK  GNAG ++ACGVIG+
Sbjct:   49 GIIDLVQTG---TLVKMNGSVSGLQPGLHGFHIHEKGDLGNGCLAAGAHFNPHKMMHGAPEDSNRHVGDLGNIETPKTGDTPILISD--SVISLTGQHNVIGRAIVIHADMDDLGRGTSELSKTTGNAGARVACGVIGI 182          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_PBCV1 (Superoxide dismutase [Cu-Zn] OS=Paramecium bursaria Chlorella virus 1 GN=A245R PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.119e-25
Identity = 66/150 (44.00%), Postives = 81/150 (54.00%), Query Frame = 3
Query:   90 KAVAYVISKWGP-KGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIG 536
            K V+ +    GP KG + F +E                  HGFH+H  GD+   C S   HFNPF   HGGP+  IRH GDLGNI    +GKAK +  D   +I L G  +IIGR++V+H   DDLG  GN  S K GNAG +I C VIG
Sbjct:   33 KPVSAIAVLEGPVKGTVRFVEESSKVKISVDISGLKPNRKHGFHVHEAGDLTDGCTSACAHFNPFGTAHGGPDSKIRHVGDLGNILADKNGKAKYSFYD--SMIKLRGKCNIIGRAIVVHADTDDLGLGGNAESLKTGNAGKRIGCAVIG 180          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC6_DICDI (Probable superoxide dismutase [Cu-Zn] 6 OS=Dictyostelium discoideum GN=sodF PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.462e-25
Identity = 60/144 (41.67%), Postives = 87/144 (60.42%), Query Frame = 3
Query:  105 VISKWGPKGILHFKQEGDG-PTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVI 533
            +I   G +G +   QE +G P  I GT+  L+ G HG H+H +GD ++ C S GDH+NP  ++HG P D  RH GDLGNI    +G A I+I D   ++ L G  S++GR++VIH   DD G+     SK  G++G ++ CG+I
Sbjct:    7 IIKGLGVEGKVTLSQECEGSPIYINGTVSGLTPGQHGMHVHEFGDTSNGCISAGDHYNPLHREHGSPLDVERHIGDLGNIKALSNGVATISIRD--TIMSLFGDISVMGRTMVIHSDRDDYGRGNFPDSKTAGHSGKRVGCGII 148          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_SCHPO (Superoxide dismutase [Cu-Zn] OS=Schizosaccharomyces pombe GN=sod1 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.368e-23
Identity = 64/153 (41.83%), Postives = 83/153 (54.25%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQ--EGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            V+AVA +       G++ F+Q  +    + I   +   +    GFHIH +GD  + C S G HFNP  K HG     +RH GDLGN+     G  K    D   +I L G NSIIGR++VIH   DDLGK  +  S K GNAG + ACGVIG+
Sbjct:    2 VRAVAVLRGDSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAGPHFNPEGKTHGDRTAAVRHVGDLGNLESDAQGNIKTTFSDS--VISLFGANSIIGRTIVIHAGEDDLGKGTSEESLKTGNAGARNACGVIGI 152          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_LAMCR (Superoxide dismutase [Cu-Zn] (Fragment) OS=Lampanyctus crocodilus GN=sod1 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.048e-23
Identity = 64/147 (43.54%), Postives = 83/147 (56.46%), Query Frame = 3
Query:   87 VKAVAYVISKWGP-KGILHFKQEGDG-PTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIA 521
            VKAV  +    G   G ++F+QE D  P  + G +  L+ G HGFH+H +GD  +               H GP D  RH GDLGN+       AKI+I DK  ++ L GP SIIGR++VIH+K DDLGK GN  S K GNAG ++A
Sbjct:    2 VKAVCVLKGTTGEVTGTVYFEQESDSAPVKLTGQIIGLAPGLHGFHVHAFGDNTNXXXXXXXXXXXXXXTHAGPTDKDRHVGDLGNV-------AKIDITDK--MLTLNGPLSIIGRTMVIHEKADDLGKGGNDESLKTGNAGGRMA 139          
The following BLAST results are available for this feature:
BLAST of CX288704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
CCS_PIG2.664e-2740.91Copper chaperone for superoxide dismutase OS=Sus s... [more]
SODC_ASPJA3.479e-2753.51Superoxide dismutase [Cu-Zn] (Fragment) OS=Aspergi... [more]
SODC_ASPFL3.479e-2745.16Superoxide dismutase [Cu-Zn] OS=Aspergillus flavus... [more]
CCS_MOUSE4.544e-2742.38Copper chaperone for superoxide dismutase OS=Mus m... [more]
CCS_HUMAN2.255e-2640.40Copper chaperone for superoxide dismutase OS=Homo ... [more]
SODE_HAECO5.024e-2646.76Extracellular superoxide dismutase [Cu-Zn] OS=Haem... [more]
SODC_PBCV11.119e-2544.00Superoxide dismutase [Cu-Zn] OS=Paramecium bursari... [more]
SODC6_DICDI1.462e-2541.67Probable superoxide dismutase [Cu-Zn] 6 OS=Dictyos... [more]
SODC_SCHPO1.368e-2341.83Superoxide dismutase [Cu-Zn] OS=Schizosaccharomyce... [more]
SODC_LAMCR3.048e-2343.54Superoxide dismutase [Cu-Zn] (Fragment) OS=Lampany... [more]

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Properties
Property NameValue
Genbank descriptionC02003D12SK IF1 Citrus clementina cDNA clone C02003D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288704 ID=CX288704; Name=CX288704; organism=Citrus clementina; type=EST; length=589bp
AGAGAACGGCTTCAATCAAGTTGGTAGCCCTTTTAGCTGTTTTATTCTGT
TTTGTCAATGCAACCAAATCAAGAGGAGTCCCAACGGTGAAAGCAGTTGC
TTATGTTATTAGCAAATGGGGTCCCAAGGGAATTCTCCATTTTAAACAGG
AAGGAGATGGCCCAACAACTATAAAGGGGACACTCTATTACCTTTCGCAG
GGTGCTCACGGATTTCATATACACGTCTACGGGGACATGGCCCATTTCTG
CCAGTCAACTGGCGATCACTTTAACCCATTTCGCAAAGATCATGGTGGCC
CAGAGGATTGGATTCGTCACGCCGGTGATTTAGGAAATATCTATGTTGGT
TTTGATGGTAAAGCCAAGATCAACATTGTTGACAAGCATAAGCTGATTCC
TCTTGTTGGGCCAAATTCCATTATCGGAAGGTCTGTCGTGATACACGATA
AGCATGATGATCTTGGCAAGGTTGGAAATTACCACAGCAAAAAGAATGGA
AATGCTGGTGACAAAATAGCTTGTGGCGTCATTGGTCTCCAAGCATGAAT
GGTCTCGGTTTGGACTCTATATGATAAATACTTTACCTG
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