CX288704
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: CCS_PIG (Copper chaperone for superoxide dismutase OS=Sus scrofa GN=CCS PE=2 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 2.664e-27 Identity = 63/154 (40.91%), Postives = 91/154 (59.09%), Query Frame = 3 Query: 87 VKAVAYVISKWGP-KGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQA 545 ++A ++ GP +G++ F Q I+GT+ L G HG H+H +GD+ C S GDHFNP HGGP+D RH GDLGN+ DG+A + D+ L+ +IGRS+VI + DDLG+ G+ SK GN+G+++ACG+I A Sbjct: 86 LEAAVAILGGSGPVQGVVRFLQLTPERCLIEGTIDGLKPGLHGLHVHQFGDLTRNCNSCGDHFNPDGMSHGGPQDSDRHRGDLGNVCADADGRAVFRMEDE-----LLKVWDVIGRSLVIDEGEDDLGRGGHPLSKITGNSGERLACGIIARSA 234
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_ASPJA (Superoxide dismutase [Cu-Zn] (Fragment) OS=Aspergillus japonicus GN=sodC PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 3.479e-27 Identity = 61/114 (53.51%), Postives = 74/114 (64.91%), Query Frame = 3 Query: 207 HGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAG---DKIACGVIGL 539 HGFH+H GD + C STG HFNP K+HG P+D RHAGDLGNI G DG A +N+ D IPL G +SIIGR+VV+H DDLGK G+ SK GN+ D A G+ G+ Sbjct: 8 HGFHVHALGDTTNGCMSTGPHFNPTGKEHGAPQDENRHAGDLGNITAGADGVANVNVSDSQ--IPLTGAHSIIGRAVVVHADPDDLGKGGHELSKTTGNSNSSMDSCAHGIQGI 119
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_ASPFL (Superoxide dismutase [Cu-Zn] OS=Aspergillus flavus GN=sodC PE=3 SV=3) HSP 1 Score: 121.324 bits (303), Expect = 3.479e-27 Identity = 70/155 (45.16%), Postives = 93/155 (60.00%), Query Frame = 3 Query: 87 VKAVAYVISKWGPKGILHFKQ-EGDGPTTIKGTLY-YLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQA 545 VKAVA V G + F+Q + + PTT+ + + + FH+H +GD + C S G HFNPF K+HG PED RH GDLGN +G A + D KLI L+G S++GR++VIH DDLG+ + SKK GNAG + ACGVIG+ A Sbjct: 2 VKAVA-VRGDSKISGTVTFEQADANAPTTVSWNITGHDANAERAFHVHQFGDNTNGCTSAGPHFNPFGKEHGAPEDENRHVGDLGNFKTDAEGNAVGSKQD--KLIKLIGAESVLGRTLVIHAGTDDLGRSEHPESKKTGNAGARPACGVIGIAA 153
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: CCS_MOUSE (Copper chaperone for superoxide dismutase OS=Mus musculus GN=Ccs PE=1 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 4.544e-27 Identity = 64/151 (42.38%), Postives = 85/151 (56.29%), Query Frame = 3 Query: 93 AVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQA 545 AVA + +G++ F Q I+GT+ L G HG H+H YGD+ C S GDHFNP HGGP+D RH GDLGN+ G+A I DK + +IGRS+VI + DDLG+ G+ SK GN+G ++ACG+I A Sbjct: 89 AVAILEGCGSIQGVVRFLQLSSELCLIEGTIDGLEPGLHGLHVHQYGDLTRDCNSCGDHFNPDGASHGGPQDTDRHRGDLGNVRAEAGGRATFRIEDKQLKV-----WDVIGRSLVIDEGEDDLGRGGHPLSKITGNSGKRLACGIIARSA 234
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: CCS_HUMAN (Copper chaperone for superoxide dismutase OS=Homo sapiens GN=CCS PE=1 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 2.255e-26 Identity = 61/151 (40.40%), Postives = 88/151 (58.28%), Query Frame = 3 Query: 93 AVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQA 545 AVA + +G++ F Q I+GT+ L G HG H+H YGD+ + C S G+HFNP HGGP+D RH GDLGN+ DG+A + D+ + +IGRS++I + DDLG+ G+ SK GN+G+++ACG+I A Sbjct: 89 AVAILGGPGTVQGVVRFLQLTPERCLIEGTIDGLEPGLHGLHVHQYGDLTNNCNSCGNHFNPDGASHGGPQDSDRHRGDLGNVRADADGRAIFRMEDEQLKV-----WDVIGRSLIIDEGEDDLGRGGHPLSKITGNSGERLACGIIARSA 234
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODE_HAECO (Extracellular superoxide dismutase [Cu-Zn] OS=Haemonchus contortus GN=SOD PE=2 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 5.024e-26 Identity = 65/139 (46.76%), Postives = 84/139 (60.43%), Query Frame = 3 Query: 129 GILHFKQEGDGPTTIK--GTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539 GI+ Q G T +K G++ L G HGFHIH GD+ + C + G HFNP + HG PED RH GDLGNI G I I D +I L G +++IGR++VIH DDLG+ + SK GNAG ++ACGVIG+ Sbjct: 49 GIIDLVQTG---TLVKMNGSVSGLQPGLHGFHIHEKGDLGNGCLAAGAHFNPHKMMHGAPEDSNRHVGDLGNIETPKTGDTPILISD--SVISLTGQHNVIGRAIVIHADMDDLGRGTSELSKTTGNAGARVACGVIGI 182
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_PBCV1 (Superoxide dismutase [Cu-Zn] OS=Paramecium bursaria Chlorella virus 1 GN=A245R PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.119e-25 Identity = 66/150 (44.00%), Postives = 81/150 (54.00%), Query Frame = 3 Query: 90 KAVAYVISKWGP-KGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIG 536 K V+ + GP KG + F +E HGFH+H GD+ C S HFNPF HGGP+ IRH GDLGNI +GKAK + D +I L G +IIGR++V+H DDLG GN S K GNAG +I C VIG Sbjct: 33 KPVSAIAVLEGPVKGTVRFVEESSKVKISVDISGLKPNRKHGFHVHEAGDLTDGCTSACAHFNPFGTAHGGPDSKIRHVGDLGNILADKNGKAKYSFYD--SMIKLRGKCNIIGRAIVVHADTDDLGLGGNAESLKTGNAGKRIGCAVIG 180
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC6_DICDI (Probable superoxide dismutase [Cu-Zn] 6 OS=Dictyostelium discoideum GN=sodF PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.462e-25 Identity = 60/144 (41.67%), Postives = 87/144 (60.42%), Query Frame = 3 Query: 105 VISKWGPKGILHFKQEGDG-PTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVI 533 +I G +G + QE +G P I GT+ L+ G HG H+H +GD ++ C S GDH+NP ++HG P D RH GDLGNI +G A I+I D ++ L G S++GR++VIH DD G+ SK G++G ++ CG+I Sbjct: 7 IIKGLGVEGKVTLSQECEGSPIYINGTVSGLTPGQHGMHVHEFGDTSNGCISAGDHYNPLHREHGSPLDVERHIGDLGNIKALSNGVATISIRD--TIMSLFGDISVMGRTMVIHSDRDDYGRGNFPDSKTAGHSGKRVGCGII 148
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_SCHPO (Superoxide dismutase [Cu-Zn] OS=Schizosaccharomyces pombe GN=sod1 PE=2 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.368e-23 Identity = 64/153 (41.83%), Postives = 83/153 (54.25%), Query Frame = 3 Query: 87 VKAVAYVISKWGPKGILHFKQ--EGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539 V+AVA + G++ F+Q + + I + + GFHIH +GD + C S G HFNP K HG +RH GDLGN+ G K D +I L G NSIIGR++VIH DDLGK + S K GNAG + ACGVIG+ Sbjct: 2 VRAVAVLRGDSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAGPHFNPEGKTHGDRTAAVRHVGDLGNLESDAQGNIKTTFSDS--VISLFGANSIIGRTIVIHAGEDDLGKGTSEESLKTGNAGARNACGVIGI 152
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_LAMCR (Superoxide dismutase [Cu-Zn] (Fragment) OS=Lampanyctus crocodilus GN=sod1 PE=1 SV=2) HSP 1 Score: 108.227 bits (269), Expect = 3.048e-23 Identity = 64/147 (43.54%), Postives = 83/147 (56.46%), Query Frame = 3 Query: 87 VKAVAYVISKWGP-KGILHFKQEGDG-PTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIA 521 VKAV + G G ++F+QE D P + G + L+ G HGFH+H +GD + H GP D RH GDLGN+ AKI+I DK ++ L GP SIIGR++VIH+K DDLGK GN S K GNAG ++A Sbjct: 2 VKAVCVLKGTTGEVTGTVYFEQESDSAPVKLTGQIIGLAPGLHGFHVHAFGDNTNXXXXXXXXXXXXXXTHAGPTDKDRHVGDLGNV-------AKIDITDK--MLTLNGPLSIIGRTMVIHEKADDLGKGGNDESLKTGNAGGRMA 139 The following BLAST results are available for this feature:
BLAST of CX288704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 142
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288704 ID=CX288704; Name=CX288704; organism=Citrus clementina; type=EST; length=589bpback to top |