CX288704

Overview
NameCX288704
Unique NameCX288704
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length589
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_DROMD (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila madeirensis GN=Sod PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.507e-22
Identity = 50/108 (46.30%), Postives = 68/108 (62.96%), Query Frame = 3
Query:  126 KGILHFKQE-GDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIH 446
            KGI+ F+QE  + P  + G +  L++G HGFH+H +GD  + C S+G H+NP  K+HG P D  RH GDLGNI    D    ++I D    I L G +SIIGR+VV+H
Sbjct:    6 KGIVFFEQETSEAPVKVTGEVLGLAKGLHGFHVHEFGDNTNGCMSSGPHYNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSK--ITLFGADSIIGRTVVVH 111          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_DROTO (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila tolteca GN=Sod PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.804e-22
Identity = 50/108 (46.30%), Postives = 67/108 (62.04%), Query Frame = 3
Query:  126 KGILHFKQE-GDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIH 446
            KG + F+QE  + P  + G +  L++G HGFH+H +G+  + C S+G HFNP  K+HG P D  RH GDLGNI    D    ++I D    I L G NSIIGR+VV+H
Sbjct:    6 KGTVFFEQETSEAPVKVTGEVLGLTKGLHGFHVHEFGNNTNGCMSSGPHFNPGNKEHGAPTDGNRHLGDLGNIQAAGDSPTAVSITDSK--ITLFGANSIIGRTVVVH 111          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_DROOB (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila obscura GN=Sod PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.672e-21
Identity = 50/108 (46.30%), Postives = 67/108 (62.04%), Query Frame = 3
Query:  126 KGILHFKQE-GDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIH 446
            KG + F+QE  + P  + G +  L++G HGFH+H +GD  + C S+G HFNP  K+HG P D  RH GDLGNI    D    ++I D    I L G +SIIGR+VV+H
Sbjct:    6 KGTVFFEQETSEAPVKVTGEVLGLTKGLHGFHVHEFGDNTNGCMSSGPHFNPRSKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSK--ITLFGADSIIGRTVVVH 111          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODE_SCHMA (Extracellular superoxide dismutase [Cu-Zn] OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.726e-21
Identity = 59/141 (41.84%), Postives = 80/141 (56.74%), Query Frame = 3
Query:  129 GILHFKQEGDGPTTIKGTLYYLSQGAH-GFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGP-NSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQA 545
            G + F Q GD    + G++  L  G   G H+H YG + + C   G HFNPF + HG    + RHAGDLGNI VG  G AK    D +  I  +GP +  IGR++VIH   DDLG+  +  S+  GN+G ++AC  IG +A
Sbjct:   47 GAVWFTQHGDY-MYVNGSVAGLPPGKLLGTHVHRYGGLGNMCLEAGPHFNPFNQRHGPRHGYPRHAGDLGNIRVGRGGVAKF---DFYVTIKGLGPFDGFIGRALVIHANRDDLGRNRDEGSRTTGNSGPRLACATIGFRA 183          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_DROPE (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila persimilis GN=Sod PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.866e-21
Identity = 50/108 (46.30%), Postives = 66/108 (61.11%), Query Frame = 3
Query:  126 KGILHFKQE-GDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIH 446
            KG + F+QE  + P  + G    L++G HGFH+H +GD  + C S+G HFNP  K+HG P D  RH GDLGNI    D    ++I D    I L G +SIIGR+VV+H
Sbjct:    6 KGTVFFEQETSEAPVKVTGEGLGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSK--ITLFGADSIIGRTVVVH 111          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_DROPB (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila pseudoobscura bogotana GN=Sod PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.866e-21
Identity = 50/108 (46.30%), Postives = 66/108 (61.11%), Query Frame = 3
Query:  126 KGILHFKQE-GDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIH 446
            KG + F+QE  + P  + G    L++G HGFH+H +GD  + C S+G HFNP  K+HG P D  RH GDLGNI    D    ++I D    I L G +SIIGR+VV+H
Sbjct:    6 KGTVFFEQETSEAPVKVTGEGLGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSK--ITLFGADSIIGRTVVVH 111          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_DROMI (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila miranda GN=Sod PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.866e-21
Identity = 50/108 (46.30%), Postives = 66/108 (61.11%), Query Frame = 3
Query:  126 KGILHFKQE-GDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIH 446
            KG + F+QE  + P  + G    L++G HGFH+H +GD  + C S+G HFNP  K+HG P D  RH GDLGNI    D    ++I D    I L G +SIIGR+VV+H
Sbjct:    6 KGTVFFEQETSEAPVKVTGEGLGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSK--ITLFGADSIIGRTVVVH 111          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODE_RAT (Extracellular superoxide dismutase [Cu-Zn] OS=Rattus norvegicus GN=Sod3 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 2.670e-19
Identity = 55/144 (38.19%), Postives = 81/144 (56.25%), Query Frame = 3
Query:  129 GILHFKQEG-----DGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKL---IPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIG 536
            G++ F+Q G     +    ++G     +   H  H+H +GD++  C+STG H+NP    H       +H GD GN  V  DG+     + KH++     L GP+SI+GR+VV+H   DDLGK GN  S +NGNAG ++AC V+G
Sbjct:   87 GLVLFRQLGPSSRLEASFNLEGFPAEQNTSNHAIHVHEFGDLSQGCESTGPHYNPLGVPHP------QHPGDFGNFVVR-DGR-----LWKHRMGLATSLAGPHSILGRAVVVHAGEDDLGKGGNQASVQNGNAGRRLACCVVG 218          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODE_MOUSE (Extracellular superoxide dismutase [Cu-Zn] OS=Mus musculus GN=Sod3 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.576e-18
Identity = 52/144 (36.11%), Postives = 78/144 (54.17%), Query Frame = 3
Query:  129 GILHFKQEGDGPT-----TIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKL---IPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIG 536
            G++ F+Q G G       +++G     +      H+H +GD++  C STG H+NP    H       +H GD GN  V      +   + +H++     L GP++I+GRSVV+H   DDLGK GN  S +NGNAG ++AC V+G
Sbjct:   94 GLVLFRQLGPGSRLEAYFSLEGFPAEQNASNRAIHVHEFGDLSQGCDSTGPHYNPMEVPHP------QHPGDFGNFVV------RNGQLWRHRVGLTASLAGPHAILGRSVVVHAGEDDLGKGGNQASLQNGNAGRRLACCVVG 225          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODE_RABIT (Extracellular superoxide dismutase [Cu-Zn] OS=Oryctolagus cuniculus GN=SOD3 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.122e-17
Identity = 53/144 (36.81%), Postives = 79/144 (54.86%), Query Frame = 3
Query:  129 GILHFKQEGDGPTT-----IKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHK---LIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIG 536
            G++ F+Q G G        ++G     +  +   H+H +GD++  C STG H+NP    H       +H GD GN  V  DG+     + K++      L GP+SI+GR+VV+H   DDLG+ GN  S +NGNAG ++AC V+G
Sbjct:   84 GLVVFRQLGPGAQLEAFFDLEGFPVEANLSSRAIHVHQFGDLSQGCDSTGAHYNPLAVQHP------QHPGDFGNFAVR-DGR-----LWKYRSGLAASLAGPHSIVGRAVVVHAGEDDLGRGGNAASVENGNAGPRLACCVVG 215          
The following BLAST results are available for this feature:
BLAST of CX288704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODC_DROMD7.507e-2246.30Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_DROTO9.804e-2246.30Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_DROOB1.672e-2146.30Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODE_SCHMA3.726e-2141.84Extracellular superoxide dismutase [Cu-Zn] OS=Schi... [more]
SODC_DROPE4.866e-2146.30Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_DROPB4.866e-2146.30Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_DROMI4.866e-2146.30Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODE_RAT2.670e-1938.19Extracellular superoxide dismutase [Cu-Zn] OS=Ratt... [more]
SODE_MOUSE6.576e-1836.11Extracellular superoxide dismutase [Cu-Zn] OS=Mus ... [more]
SODE_RABIT1.122e-1736.81Extracellular superoxide dismutase [Cu-Zn] OS=Oryc... [more]

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Properties
Property NameValue
Genbank descriptionC02003D12SK IF1 Citrus clementina cDNA clone C02003D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288704 ID=CX288704; Name=CX288704; organism=Citrus clementina; type=EST; length=589bp
AGAGAACGGCTTCAATCAAGTTGGTAGCCCTTTTAGCTGTTTTATTCTGT
TTTGTCAATGCAACCAAATCAAGAGGAGTCCCAACGGTGAAAGCAGTTGC
TTATGTTATTAGCAAATGGGGTCCCAAGGGAATTCTCCATTTTAAACAGG
AAGGAGATGGCCCAACAACTATAAAGGGGACACTCTATTACCTTTCGCAG
GGTGCTCACGGATTTCATATACACGTCTACGGGGACATGGCCCATTTCTG
CCAGTCAACTGGCGATCACTTTAACCCATTTCGCAAAGATCATGGTGGCC
CAGAGGATTGGATTCGTCACGCCGGTGATTTAGGAAATATCTATGTTGGT
TTTGATGGTAAAGCCAAGATCAACATTGTTGACAAGCATAAGCTGATTCC
TCTTGTTGGGCCAAATTCCATTATCGGAAGGTCTGTCGTGATACACGATA
AGCATGATGATCTTGGCAAGGTTGGAAATTACCACAGCAAAAAGAATGGA
AATGCTGGTGACAAAATAGCTTGTGGCGTCATTGGTCTCCAAGCATGAAT
GGTCTCGGTTTGGACTCTATATGATAAATACTTTACCTG
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