CX288704

Overview
NameCX288704
Unique NameCX288704
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length589
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODE_HUMAN (Extracellular superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD3 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 5.567e-17
Identity = 45/117 (38.46%), Postives = 67/117 (57.26%), Query Frame = 3
Query:  195 SQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYV--GFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            +  +   H+H +GD++  C+STG H+NP    H       +H GD GN  V  G   + +  +        L GP+SI+GR+VV+H   DDLG+ GN  S +NGNAG ++AC V+G+
Sbjct:  107 NSSSRAIHVHQFGDLSQGCESTGPHYNPLAVPHP------QHPGDFGNFAVRDGSLWRYRAGLAAS-----LAGPHSIVGRAVVVHAGEDDLGRGGNQASVENGNAGRRLACCVVGV 212          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODCP_POPTM (Superoxide dismutase [Cu-Zn], chloroplastic OS=Populus tremuloides GN=SODCP PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.378e-14
Identity = 48/115 (41.74%), Postives = 63/115 (54.78%), Query Frame = 3
Query:  210 GFHIHVYGDMA--HFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINI---VDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            GF +  Y  M       S  DH    + D    ED IRHAGDLGNI    +G A+      +  H L     PNS++GR++V+H+  DDLGK G+  S   GNAG ++ACGV+GL
Sbjct:   88 GFMVFTYMSMVIPQMGVSQQDHILIQQVDTWCSEDEIRHAGDLGNIVANAEGVAECRQSWQIRYHSL----RPNSVVGRALVVHELQDDLGKGGHELSLSTGNAGGRLACGVVGL 198          
The following BLAST results are available for this feature:
BLAST of CX288704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODE_HUMAN5.567e-1738.46Extracellular superoxide dismutase [Cu-Zn] OS=Homo... [more]
SODCP_POPTM3.378e-1441.74Superoxide dismutase [Cu-Zn], chloroplastic OS=Pop... [more]

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Properties
Property NameValue
Genbank descriptionC02003D12SK IF1 Citrus clementina cDNA clone C02003D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288704 ID=CX288704; Name=CX288704; organism=Citrus clementina; type=EST; length=589bp
AGAGAACGGCTTCAATCAAGTTGGTAGCCCTTTTAGCTGTTTTATTCTGT
TTTGTCAATGCAACCAAATCAAGAGGAGTCCCAACGGTGAAAGCAGTTGC
TTATGTTATTAGCAAATGGGGTCCCAAGGGAATTCTCCATTTTAAACAGG
AAGGAGATGGCCCAACAACTATAAAGGGGACACTCTATTACCTTTCGCAG
GGTGCTCACGGATTTCATATACACGTCTACGGGGACATGGCCCATTTCTG
CCAGTCAACTGGCGATCACTTTAACCCATTTCGCAAAGATCATGGTGGCC
CAGAGGATTGGATTCGTCACGCCGGTGATTTAGGAAATATCTATGTTGGT
TTTGATGGTAAAGCCAAGATCAACATTGTTGACAAGCATAAGCTGATTCC
TCTTGTTGGGCCAAATTCCATTATCGGAAGGTCTGTCGTGATACACGATA
AGCATGATGATCTTGGCAAGGTTGGAAATTACCACAGCAAAAAGAATGGA
AATGCTGGTGACAAAATAGCTTGTGGCGTCATTGGTCTCCAAGCATGAAT
GGTCTCGGTTTGGACTCTATATGATAAATACTTTACCTG
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