CX288704

Overview
NameCX288704
Unique NameCX288704
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length589
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC1_SOLLC (Superoxide dismutase [Cu-Zn] 1 OS=Solanum lycopersicum GN=SODCC.1 PE=2 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 1.719e-42
Identity = 87/152 (57.24%), Postives = 100/152 (65.79%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 542
            VKAVA + S  G  G   F Q G  PTT+ G +  L  G HGFH+H  GD  + C STG H+NP  K+HG PED +RHAGDLGNI VG DG A   I DK   IPL GP SIIGR+VV+H   DDLGK G+  SK  GNAG +IACG+IGLQ
Sbjct:    2 VKAVAVLNSSEGVSGTYLFTQVGVAPTTVNGNISGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTITDKQ--IPLTGPQSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRIACGIIGLQ 151          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_ARATH (Superoxide dismutase [Cu-Zn] OS=Arabidopsis thaliana GN=SODCC PE=1 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.114e-41
Identity = 86/151 (56.95%), Postives = 99/151 (65.56%), Query Frame = 3
Query:   90 KAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 542
            K VA + S  G  G + F QEGDG TT+ GT+  L  G HGFH+H  GD  + C STG HFNP  K HG PED  RHAGDLGNI VG DG A   I D    IPL GPNSI+GR+VV+H   DDLGK G+  S   GNAG ++ACG+IGLQ
Sbjct:    3 KGVAVLNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQ--IPLTGPNSIVGRAVVVHADPDDLGKGGHELSLATGNAGGRVACGIIGLQ 151          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_CAPAN (Superoxide dismutase [Cu-Zn] OS=Capsicum annuum GN=SODCC PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.900e-41
Identity = 84/152 (55.26%), Postives = 100/152 (65.79%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 542
            VKAVA + S     G + F Q+GD PTT+ G +  L  G HGFH+H  GD  + C STG H+NP  K+HG PED  RHAGDLGNI VG DG A   I D+   IPL GP SIIGR VV+H   DDLGK G+  +K  GNAG ++ACG+IGLQ
Sbjct:    2 VKAVAVLSSSECVSGTILFSQDGDAPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDENRHAGDLGNITVGEDGTASFTITDEQ--IPLTGPQSIIGRGVVVHADPDDLGKGGHELTKTTGNAGGRVACGIIGLQ 151          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC1_BRAJU (Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea GN=SODCC1 PE=2 SV=3)

HSP 1 Score: 168.703 bits (426), Expect = 1.900e-41
Identity = 85/151 (56.29%), Postives = 100/151 (66.23%), Query Frame = 3
Query:   90 KAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 542
            K V  + S  G KG + F QEG+G TT+ GT+  L  G HGFH+H  GD  + C STG HFNP  K HG PED  RHAGDLGNI VG DG A   I D    IPL GPNSI+GR+VV+H + DDLGK G+  S   GNAG ++ACG+IGLQ
Sbjct:    3 KGVRVLNSSEGVKGTIFFTQEGNGTTTVTGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPEGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDSQ--IPLDGPNSIVGRAVVVHAEPDDLGKGGHELSLTTGNAGGRVACGIIGLQ 151          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_BRAOC (Superoxide dismutase [Cu-Zn] OS=Brassica oleracea var. capitata GN=SODCC PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 3.241e-41
Identity = 84/151 (55.63%), Postives = 99/151 (65.56%), Query Frame = 3
Query:   90 KAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 542
            K VA + S  G KG + F  EG+G TT+ GT+  L  G HGFH+H  GD  + C STG HFNP  K HG PED  RHAGDLGNI VG DG A   I D    IPL GPNSI+GR++V+H   DDLGK G+  S   GNAG ++ACG+IGLQ
Sbjct:    3 KGVAVLNSSEGVKGTIFFTHEGNGATTVTGTVSGLRPGLHGFHVHALGDNTNGCMSTGPHFNPDGKTHGAPEDANRHAGDLGNIIVGDDGTATFTITDSQ--IPLSGPNSIVGRAIVVHADPDDLGKGGHELSLSTGNAGGRVACGIIGLQ 151          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_CAVPO (Superoxide dismutase [Cu-Zn] OS=Cavia porcellus GN=SOD1 PE=1 SV=3)

HSP 1 Score: 166.392 bits (420), Expect = 9.431e-41
Identity = 79/150 (52.67%), Postives = 101/150 (67.33%), Query Frame = 3
Query:   90 KAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            KAV  +      +GI+HF+Q+ +GP  +KG +  L +G HGFH+H +GD    C S G HFNP  K HGGP+D  RH GDLGN+  G DG A ++I D   LI L G NSIIGR++V+H+K DDLGK GN  S K GNAG ++ACGVIG+
Sbjct:    4 KAVCVLKGDGPVQGIIHFEQKANGPVVVKGRITGLVEGKHGFHVHEFGDNTQGCTSAGPHFNPLSKKHGGPQDEERHVGDLGNVTAGADGVANVSIED--SLISLSGANSIIGRTMVVHEKPDDLGKGGNEESTKTGNAGSRLACGVIGI 151          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODCP_SPIOL (Superoxide dismutase [Cu-Zn], chloroplastic OS=Spinacia oleracea GN=SODCP PE=1 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 2.101e-40
Identity = 79/152 (51.97%), Postives = 102/152 (67.11%), Query Frame = 3
Query:   84 TVKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            T KAVA +      +G++   QE DGPTT+   +  L+ G HGFH+H +GD  + C STG HFNP +K HG PED +RHAGDLGNI    DG A+  IVD    IPL GPNS++GR++V+H+  DDLGK G+  S   GNAG ++ACGV+GL
Sbjct:   70 TKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRISGLAPGKHGFHLHEFGDTTNGCMSTGPHFNPDKKTHGAPEDEVRHAGDLGNIVANTDGVAEATIVDNQ--IPLTGPNSVVGRALVVHELEDDLGKGGHELSPTTGNAGGRLACGVVGL 219          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC2_BRAJU (Superoxide dismutase [Cu-Zn] 2 OS=Brassica juncea GN=SODCC2 PE=2 SV=3)

HSP 1 Score: 162.925 bits (411), Expect = 1.043e-39
Identity = 84/151 (55.63%), Postives = 98/151 (64.90%), Query Frame = 3
Query:   90 KAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 542
            K VA + S  G KG + F QEG+G TT+ GT+  L  G HGFH+H  GD  +   STG HFNP  K HG PED  RHAGDLGNI VG DG A   I D    IPL GPNSI+GR+VV+H   D LGK G+  S   GNAG ++ACG+IGLQ
Sbjct:    3 KGVAVLNSSEGVKGTIFFAQEGEGKTTVTGTVSGLKPGLHGFHVHALGDTTNGSMSTGPHFNPDGKQHGAPEDANRHAGDLGNIIVGDDGTATFTITDCQ--IPLSGPNSIVGRAVVVHADPDVLGKGGHELSLTTGNAGGRVACGIIGLQ 151          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC2_MESCR (Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum crystallinum GN=SODCC.2 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.779e-39
Identity = 79/153 (51.63%), Postives = 101/153 (66.01%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQA 545
            +KAVA +      KG L F Q+  G T +KG +  L+ G HGFHIH  GD  + C STG HFNP +KDHG P D  RHAGDLGN+  G DG A++++ D    IPL G +SI+GR+VV+H   DDLG+ G+  SK  GNAG ++ CG+IGLQA
Sbjct:    4 IKAVAVINGNNNVKGSLQFIQDSTGVTHVKGRITGLTPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPFDTERHAGDLGNVVAGADGVAEVSVRDTQ--IPLSGQHSILGRAVVVHADQDDLGRTGHELSKTTGNAGARVRCGIIGLQA 154          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODCP_SOLLC (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solanum lycopersicum GN=SODCP.2 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.034e-39
Identity = 77/152 (50.66%), Postives = 101/152 (66.45%), Query Frame = 3
Query:   84 TVKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            T KAVA +      +G++   Q+ DGPTT+   +  L+ G HGFH+H YGD  + C STG HFNP +  HG P D IRHAGDLGNI    DG A++ +VD    IPL GPNS++GR++V+H+  DDLGK G+  S   GNAG ++ACGV+GL
Sbjct:   65 TKKAVAVLKGNSNVEGVVTLSQDDDGPTTVNVRITGLAPGLHGFHLHEYGDTTNGCMSTGAHFNPNKLTHGAPGDEIRHAGDLGNIVANADGVAEVTLVDNQ--IPLTGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 214          
The following BLAST results are available for this feature:
BLAST of CX288704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODC1_SOLLC1.719e-4257.24Superoxide dismutase [Cu-Zn] 1 OS=Solanum lycopers... [more]
SODC_ARATH1.114e-4156.95Superoxide dismutase [Cu-Zn] OS=Arabidopsis thalia... [more]
SODC_CAPAN1.900e-4155.26Superoxide dismutase [Cu-Zn] OS=Capsicum annuum GN... [more]
SODC1_BRAJU1.900e-4156.29Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea ... [more]
SODC_BRAOC3.241e-4155.63Superoxide dismutase [Cu-Zn] OS=Brassica oleracea ... [more]
SODC_CAVPO9.431e-4152.67Superoxide dismutase [Cu-Zn] OS=Cavia porcellus GN... [more]
SODCP_SPIOL2.101e-4051.97Superoxide dismutase [Cu-Zn], chloroplastic OS=Spi... [more]
SODC2_BRAJU1.043e-3955.63Superoxide dismutase [Cu-Zn] 2 OS=Brassica juncea ... [more]
SODC2_MESCR1.779e-3951.63Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum... [more]
SODCP_SOLLC3.034e-3950.66Superoxide dismutase [Cu-Zn], chloroplastic OS=Sol... [more]

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Properties
Property NameValue
Genbank descriptionC02003D12SK IF1 Citrus clementina cDNA clone C02003D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288704 ID=CX288704; Name=CX288704; organism=Citrus clementina; type=EST; length=589bp
AGAGAACGGCTTCAATCAAGTTGGTAGCCCTTTTAGCTGTTTTATTCTGT
TTTGTCAATGCAACCAAATCAAGAGGAGTCCCAACGGTGAAAGCAGTTGC
TTATGTTATTAGCAAATGGGGTCCCAAGGGAATTCTCCATTTTAAACAGG
AAGGAGATGGCCCAACAACTATAAAGGGGACACTCTATTACCTTTCGCAG
GGTGCTCACGGATTTCATATACACGTCTACGGGGACATGGCCCATTTCTG
CCAGTCAACTGGCGATCACTTTAACCCATTTCGCAAAGATCATGGTGGCC
CAGAGGATTGGATTCGTCACGCCGGTGATTTAGGAAATATCTATGTTGGT
TTTGATGGTAAAGCCAAGATCAACATTGTTGACAAGCATAAGCTGATTCC
TCTTGTTGGGCCAAATTCCATTATCGGAAGGTCTGTCGTGATACACGATA
AGCATGATGATCTTGGCAAGGTTGGAAATTACCACAGCAAAAAGAATGGA
AATGCTGGTGACAAAATAGCTTGTGGCGTCATTGGTCTCCAAGCATGAAT
GGTCTCGGTTTGGACTCTATATGATAAATACTTTACCTG
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