CX288704
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC1_SOLLC (Superoxide dismutase [Cu-Zn] 1 OS=Solanum lycopersicum GN=SODCC.1 PE=2 SV=2) HSP 1 Score: 172.17 bits (435), Expect = 1.719e-42 Identity = 87/152 (57.24%), Postives = 100/152 (65.79%), Query Frame = 3 Query: 87 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 542 VKAVA + S G G F Q G PTT+ G + L G HGFH+H GD + C STG H+NP K+HG PED +RHAGDLGNI VG DG A I DK IPL GP SIIGR+VV+H DDLGK G+ SK GNAG +IACG+IGLQ Sbjct: 2 VKAVAVLNSSEGVSGTYLFTQVGVAPTTVNGNISGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTITDKQ--IPLTGPQSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRIACGIIGLQ 151
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_ARATH (Superoxide dismutase [Cu-Zn] OS=Arabidopsis thaliana GN=SODCC PE=1 SV=2) HSP 1 Score: 169.474 bits (428), Expect = 1.114e-41 Identity = 86/151 (56.95%), Postives = 99/151 (65.56%), Query Frame = 3 Query: 90 KAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 542 K VA + S G G + F QEGDG TT+ GT+ L G HGFH+H GD + C STG HFNP K HG PED RHAGDLGNI VG DG A I D IPL GPNSI+GR+VV+H DDLGK G+ S GNAG ++ACG+IGLQ Sbjct: 3 KGVAVLNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQ--IPLTGPNSIVGRAVVVHADPDDLGKGGHELSLATGNAGGRVACGIIGLQ 151
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_CAPAN (Superoxide dismutase [Cu-Zn] OS=Capsicum annuum GN=SODCC PE=2 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 1.900e-41 Identity = 84/152 (55.26%), Postives = 100/152 (65.79%), Query Frame = 3 Query: 87 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 542 VKAVA + S G + F Q+GD PTT+ G + L G HGFH+H GD + C STG H+NP K+HG PED RHAGDLGNI VG DG A I D+ IPL GP SIIGR VV+H DDLGK G+ +K GNAG ++ACG+IGLQ Sbjct: 2 VKAVAVLSSSECVSGTILFSQDGDAPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDENRHAGDLGNITVGEDGTASFTITDEQ--IPLTGPQSIIGRGVVVHADPDDLGKGGHELTKTTGNAGGRVACGIIGLQ 151
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC1_BRAJU (Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea GN=SODCC1 PE=2 SV=3) HSP 1 Score: 168.703 bits (426), Expect = 1.900e-41 Identity = 85/151 (56.29%), Postives = 100/151 (66.23%), Query Frame = 3 Query: 90 KAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 542 K V + S G KG + F QEG+G TT+ GT+ L G HGFH+H GD + C STG HFNP K HG PED RHAGDLGNI VG DG A I D IPL GPNSI+GR+VV+H + DDLGK G+ S GNAG ++ACG+IGLQ Sbjct: 3 KGVRVLNSSEGVKGTIFFTQEGNGTTTVTGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPEGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDSQ--IPLDGPNSIVGRAVVVHAEPDDLGKGGHELSLTTGNAGGRVACGIIGLQ 151
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_BRAOC (Superoxide dismutase [Cu-Zn] OS=Brassica oleracea var. capitata GN=SODCC PE=1 SV=2) HSP 1 Score: 167.933 bits (424), Expect = 3.241e-41 Identity = 84/151 (55.63%), Postives = 99/151 (65.56%), Query Frame = 3 Query: 90 KAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 542 K VA + S G KG + F EG+G TT+ GT+ L G HGFH+H GD + C STG HFNP K HG PED RHAGDLGNI VG DG A I D IPL GPNSI+GR++V+H DDLGK G+ S GNAG ++ACG+IGLQ Sbjct: 3 KGVAVLNSSEGVKGTIFFTHEGNGATTVTGTVSGLRPGLHGFHVHALGDNTNGCMSTGPHFNPDGKTHGAPEDANRHAGDLGNIIVGDDGTATFTITDSQ--IPLSGPNSIVGRAIVVHADPDDLGKGGHELSLSTGNAGGRVACGIIGLQ 151
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_CAVPO (Superoxide dismutase [Cu-Zn] OS=Cavia porcellus GN=SOD1 PE=1 SV=3) HSP 1 Score: 166.392 bits (420), Expect = 9.431e-41 Identity = 79/150 (52.67%), Postives = 101/150 (67.33%), Query Frame = 3 Query: 90 KAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539 KAV + +GI+HF+Q+ +GP +KG + L +G HGFH+H +GD C S G HFNP K HGGP+D RH GDLGN+ G DG A ++I D LI L G NSIIGR++V+H+K DDLGK GN S K GNAG ++ACGVIG+ Sbjct: 4 KAVCVLKGDGPVQGIIHFEQKANGPVVVKGRITGLVEGKHGFHVHEFGDNTQGCTSAGPHFNPLSKKHGGPQDEERHVGDLGNVTAGADGVANVSIED--SLISLSGANSIIGRTMVVHEKPDDLGKGGNEESTKTGNAGSRLACGVIGI 151
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODCP_SPIOL (Superoxide dismutase [Cu-Zn], chloroplastic OS=Spinacia oleracea GN=SODCP PE=1 SV=2) HSP 1 Score: 165.236 bits (417), Expect = 2.101e-40 Identity = 79/152 (51.97%), Postives = 102/152 (67.11%), Query Frame = 3 Query: 84 TVKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539 T KAVA + +G++ QE DGPTT+ + L+ G HGFH+H +GD + C STG HFNP +K HG PED +RHAGDLGNI DG A+ IVD IPL GPNS++GR++V+H+ DDLGK G+ S GNAG ++ACGV+GL Sbjct: 70 TKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRISGLAPGKHGFHLHEFGDTTNGCMSTGPHFNPDKKTHGAPEDEVRHAGDLGNIVANTDGVAEATIVDNQ--IPLTGPNSVVGRALVVHELEDDLGKGGHELSPTTGNAGGRLACGVVGL 219
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC2_BRAJU (Superoxide dismutase [Cu-Zn] 2 OS=Brassica juncea GN=SODCC2 PE=2 SV=3) HSP 1 Score: 162.925 bits (411), Expect = 1.043e-39 Identity = 84/151 (55.63%), Postives = 98/151 (64.90%), Query Frame = 3 Query: 90 KAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 542 K VA + S G KG + F QEG+G TT+ GT+ L G HGFH+H GD + STG HFNP K HG PED RHAGDLGNI VG DG A I D IPL GPNSI+GR+VV+H D LGK G+ S GNAG ++ACG+IGLQ Sbjct: 3 KGVAVLNSSEGVKGTIFFAQEGEGKTTVTGTVSGLKPGLHGFHVHALGDTTNGSMSTGPHFNPDGKQHGAPEDANRHAGDLGNIIVGDDGTATFTITDCQ--IPLSGPNSIVGRAVVVHADPDVLGKGGHELSLTTGNAGGRVACGIIGLQ 151
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC2_MESCR (Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum crystallinum GN=SODCC.2 PE=2 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 1.779e-39 Identity = 79/153 (51.63%), Postives = 101/153 (66.01%), Query Frame = 3 Query: 87 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQA 545 +KAVA + KG L F Q+ G T +KG + L+ G HGFHIH GD + C STG HFNP +KDHG P D RHAGDLGN+ G DG A++++ D IPL G +SI+GR+VV+H DDLG+ G+ SK GNAG ++ CG+IGLQA Sbjct: 4 IKAVAVINGNNNVKGSLQFIQDSTGVTHVKGRITGLTPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPFDTERHAGDLGNVVAGADGVAEVSVRDTQ--IPLSGQHSILGRAVVVHADQDDLGRTGHELSKTTGNAGARVRCGIIGLQA 154
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODCP_SOLLC (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solanum lycopersicum GN=SODCP.2 PE=2 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 3.034e-39 Identity = 77/152 (50.66%), Postives = 101/152 (66.45%), Query Frame = 3 Query: 84 TVKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539 T KAVA + +G++ Q+ DGPTT+ + L+ G HGFH+H YGD + C STG HFNP + HG P D IRHAGDLGNI DG A++ +VD IPL GPNS++GR++V+H+ DDLGK G+ S GNAG ++ACGV+GL Sbjct: 65 TKKAVAVLKGNSNVEGVVTLSQDDDGPTTVNVRITGLAPGLHGFHLHEYGDTTNGCMSTGAHFNPNKLTHGAPGDEIRHAGDLGNIVANADGVAEVTLVDNQ--IPLTGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 214 The following BLAST results are available for this feature:
BLAST of CX288704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 142
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288704 ID=CX288704; Name=CX288704; organism=Citrus clementina; type=EST; length=589bpback to top |