CX288704
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_BRUPA (Superoxide dismutase [Cu-Zn] OS=Brugia pahangi GN=SODC PE=2 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 5.175e-39 Identity = 81/143 (56.64%), Postives = 100/143 (69.93%), Query Frame = 3 Query: 129 GILHFKQEGDG-PTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGK-VGNY--HSKKNGNAGDKIACGVIGLQA 545 GI+ FKQE +G PTTI G + L+ G HGFH+H YGD + C S G HFNP+ K HGGP D +RH GDLGNI G DG A I+I DKH + L+GPNSIIGRS+V+H DDLGK VG+ S K GNAG ++ACG++ + A Sbjct: 16 GIIRFKQEKEGSPTTISGEIKGLTPGLHGFHVHQYGDTTNGCISAGPHFNPYNKTHGGPTDEMRHVGDLGNIVAGADGTAHIDISDKH--VQLLGPNSIIGRSLVVHADQDDLGKGVGDKKDESLKTGNAGARVACGIVAVSA 156
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_CARCR (Superoxide dismutase [Cu-Zn] OS=Caretta caretta PE=1 SV=2) HSP 1 Score: 160.229 bits (404), Expect = 6.758e-39 Identity = 73/138 (52.90%), Postives = 100/138 (72.46%), Query Frame = 3 Query: 126 KGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539 KGI++F+Q+G+GP T+ G++ L++G HGFH+H +GD + C S G HFNP K+HGGP+D RH GDLGN+ +G A++ I K LI L G SIIGR++V+H+K DDLGK GN S K GNAG ++ACGV+G+ Sbjct: 29 KGIIYFEQQGNGPVTLSGSITGLTEGKHGFHVHEFGDNTNGCTSAGAHFNPPGKNHGGPQDNERHVGDLGNVIANKEGVAEVCI--KDSLISLTGSQSIIGRTMVVHEKEDDLGKGGNDESLKTGNAGSRLACGVVGI 164
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODCP_PINSY (Superoxide dismutase [Cu-Zn], chloroplastic (Fragment) OS=Pinus sylvestris GN=SODCP PE=2 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 1.506e-38 Identity = 75/138 (54.35%), Postives = 97/138 (70.29%), Query Frame = 3 Query: 126 KGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539 +G++ QE +GPTT+K L L+ G HGFH+H +GD + C STG HFNP + HG PED +RHAGDLGNI G DG A+ IVD IPL GP+S+IGR++V+H+ DDLGK G+ S GNAG ++ACGV+GL Sbjct: 3 EGVVTLSQEDNGPTTVKVRLTGLTPGKHGFHLHEFGDTTNGCMSTGSHFNPKKLTHGAPEDDVRHAGDLGNIVAGSDGVAEATIVDNQ--IPLSGPDSVIGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 138
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC2_XENLA (Superoxide dismutase [Cu-Zn] B OS=Xenopus laevis GN=sod1-B PE=1 SV=3) HSP 1 Score: 158.303 bits (399), Expect = 2.568e-38 Identity = 78/150 (52.00%), Postives = 99/150 (66.00%), Query Frame = 3 Query: 87 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIG 536 VKAV + KG++HF+Q+ +G +++G + L+ G HGFHIHV+GD + C S G HFNP K+HG P D RH GDLGN+ G A+ I D LI L GPNSIIGR+ V+H+K DDLGK GN S K GNAG ++ACGVIG Sbjct: 2 VKAVCVLAGSGDVKGVVHFEQQDEGAVSVEGKIEGLTDGLHGFHIHVFGDNTNGCMSAGSHFNPENKNHGAPGDTDRHVGDLGNV-TAEGGVAQFKITD--SLISLKGPNSIIGRTAVVHEKADDLGKGGNDESLKTGNAGGRLACGVIG 148
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_CALJA (Superoxide dismutase [Cu-Zn] OS=Callithrix jacchus GN=SOD1 PE=2 SV=3) HSP 1 Score: 157.918 bits (398), Expect = 3.354e-38 Identity = 77/152 (50.66%), Postives = 104/152 (68.42%), Query Frame = 3 Query: 87 VKAVAYVISKWGPKGILHFKQ-EGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539 +KAV + +G ++F+Q E +GP + G++ L++G HGFH+H +GD C S G HFNP + HGGPED RH GDLGN+ G DG AK++I D +I L G +SIIGR++V+H+K DDLGK GN SKK GNAG ++ACGVIG+ Sbjct: 3 MKAVCVLKGDGPVQGTINFEQKESNGPVKVWGSITGLAEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRKHGGPEDEERHVGDLGNVTAGKDGVAKVSIED--SVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLACGVIGI 152
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_RAT (Superoxide dismutase [Cu-Zn] OS=Rattus norvegicus GN=Sod1 PE=1 SV=2) HSP 1 Score: 157.532 bits (397), Expect = 4.381e-38 Identity = 75/152 (49.34%), Postives = 101/152 (66.45%), Query Frame = 3 Query: 87 VKAVAYVISKWGPKGILHFKQEGDG-PTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539 +KAV + +G++HF+Q+ G P + G + L++G HGFH+H YGD C + G HFNP K HGGP D RH GDLGN+ G DG A ++I D ++I L G +SIIGR++V+H+K DDLGK GN S K GNAG ++ACGVIG+ Sbjct: 3 MKAVCVLKGDGPVQGVIHFEQKASGEPVVVSGQITGLTEGEHGFHVHQYGDNTQGCTTAGPHFNPHSKKHGGPADEERHVGDLGNVAAGKDGVANVSIED--RVISLSGEHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLACGVIGI 152
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_CANFA (Superoxide dismutase [Cu-Zn] OS=Canis familiaris GN=SOD1 PE=2 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 5.721e-38 Identity = 75/151 (49.67%), Postives = 99/151 (65.56%), Query Frame = 3 Query: 87 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539 +KAV + + +G +HF Q+G GP + GT+ L++G HGFH+H + D C S G HFNP K HGGP+D RH GDLGN+ G DG A ++I D LI L G SIIGR++V+H+K DDLGK N S + GNAG ++ACGVIG+ Sbjct: 3 MKAVCVLKGQGPVEGTIHFVQKGSGPVVVSGTITGLTEGEHGFHVHQFEDXTQGCTSAGPHFNPLSKKHGGPKDQERHVGDLGNVTAGKDGVAIVSIED--SLIALSGDYSIIGRTMVVHEKRDDLGKGDNEESTQTGNAGSRLACGVIGI 151
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_MOUSE (Superoxide dismutase [Cu-Zn] OS=Mus musculus GN=Sod1 PE=1 SV=2) HSP 1 Score: 156.762 bits (395), Expect = 7.472e-38 Identity = 76/152 (50.00%), Postives = 100/152 (65.79%), Query Frame = 3 Query: 87 VKAVAYVISKWGPKGILHFKQEGDG-PTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539 +KAV + +G +HF+Q+ G P + G + L++G HGFH+H YGD C S G HFNP K HGGP D RH GDLGN+ G DG A ++I D ++I L G +SIIGR++V+H+K DDLGK GN S K GNAG ++ACGVIG+ Sbjct: 3 MKAVCVLKGDGPVQGTIHFEQKASGEPVVLSGQITGLTEGQHGFHVHQYGDNTQGCTSAGPHFNPHSKKHGGPADEERHVGDLGNVTAGKDGVANVSIED--RVISLSGEHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLACGVIGI 152
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODCP_VITVI (Superoxide dismutase [Cu-Zn], chloroplastic OS=Vitis vinifera GN=SODCP PE=2 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 7.472e-38 Identity = 77/152 (50.66%), Postives = 100/152 (65.79%), Query Frame = 3 Query: 84 TVKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539 T KAVA + +G++ QE DGPTT+ + L+ G HGFH+H +GD + C STG HFNP HG PED +RHAGDLGNI +G A+ IVD IPL GPN++IGR++V+H+ DDLGK G+ S GNAG ++ACGV+GL Sbjct: 60 TKKAVAVLKGTSSVEGVVTLSQEDDGPTTVSVRITGLTPGNHGFHLHEFGDTTNGCMSTGAHFNPNGMTHGAPEDDVRHAGDLGNIIANAEGVAEATIVDTQ--IPLSGPNAVIGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 209
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODCP_PEA (Superoxide dismutase [Cu-Zn], chloroplastic OS=Pisum sativum GN=SODCP PE=2 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 7.472e-38 Identity = 75/150 (50.00%), Postives = 100/150 (66.67%), Query Frame = 3 Query: 90 KAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539 KAV+ + +G++ Q+ +GPTT+ + L+ G HGFH+H YGD + C STG HFNP + HG PED IRHAGDLGNI +G A+ IVD IPL GPNS++GR++V+H+ DDLGK G+ S GNAG ++ACGV+GL Sbjct: 52 KAVSVLKGTSAVEGVVTLTQDDEGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVANAEGVAEATIVDNQ--IPLTGPNSVVGRALVVHELQDDLGKGGHELSLSTGNAGGRLACGVVGL 199 The following BLAST results are available for this feature:
BLAST of CX288704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 142
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288704 ID=CX288704; Name=CX288704; organism=Citrus clementina; type=EST; length=589bpback to top |