CX288704

Overview
NameCX288704
Unique NameCX288704
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length589
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_BRUPA (Superoxide dismutase [Cu-Zn] OS=Brugia pahangi GN=SODC PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 5.175e-39
Identity = 81/143 (56.64%), Postives = 100/143 (69.93%), Query Frame = 3
Query:  129 GILHFKQEGDG-PTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGK-VGNY--HSKKNGNAGDKIACGVIGLQA 545
            GI+ FKQE +G PTTI G +  L+ G HGFH+H YGD  + C S G HFNP+ K HGGP D +RH GDLGNI  G DG A I+I DKH  + L+GPNSIIGRS+V+H   DDLGK VG+    S K GNAG ++ACG++ + A
Sbjct:   16 GIIRFKQEKEGSPTTISGEIKGLTPGLHGFHVHQYGDTTNGCISAGPHFNPYNKTHGGPTDEMRHVGDLGNIVAGADGTAHIDISDKH--VQLLGPNSIIGRSLVVHADQDDLGKGVGDKKDESLKTGNAGARVACGIVAVSA 156          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_CARCR (Superoxide dismutase [Cu-Zn] OS=Caretta caretta PE=1 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 6.758e-39
Identity = 73/138 (52.90%), Postives = 100/138 (72.46%), Query Frame = 3
Query:  126 KGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            KGI++F+Q+G+GP T+ G++  L++G HGFH+H +GD  + C S G HFNP  K+HGGP+D  RH GDLGN+    +G A++ I  K  LI L G  SIIGR++V+H+K DDLGK GN  S K GNAG ++ACGV+G+
Sbjct:   29 KGIIYFEQQGNGPVTLSGSITGLTEGKHGFHVHEFGDNTNGCTSAGAHFNPPGKNHGGPQDNERHVGDLGNVIANKEGVAEVCI--KDSLISLTGSQSIIGRTMVVHEKEDDLGKGGNDESLKTGNAGSRLACGVVGI 164          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODCP_PINSY (Superoxide dismutase [Cu-Zn], chloroplastic (Fragment) OS=Pinus sylvestris GN=SODCP PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.506e-38
Identity = 75/138 (54.35%), Postives = 97/138 (70.29%), Query Frame = 3
Query:  126 KGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            +G++   QE +GPTT+K  L  L+ G HGFH+H +GD  + C STG HFNP +  HG PED +RHAGDLGNI  G DG A+  IVD    IPL GP+S+IGR++V+H+  DDLGK G+  S   GNAG ++ACGV+GL
Sbjct:    3 EGVVTLSQEDNGPTTVKVRLTGLTPGKHGFHLHEFGDTTNGCMSTGSHFNPKKLTHGAPEDDVRHAGDLGNIVAGSDGVAEATIVDNQ--IPLSGPDSVIGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 138          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC2_XENLA (Superoxide dismutase [Cu-Zn] B OS=Xenopus laevis GN=sod1-B PE=1 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 2.568e-38
Identity = 78/150 (52.00%), Postives = 99/150 (66.00%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIG 536
            VKAV  +      KG++HF+Q+ +G  +++G +  L+ G HGFHIHV+GD  + C S G HFNP  K+HG P D  RH GDLGN+     G A+  I D   LI L GPNSIIGR+ V+H+K DDLGK GN  S K GNAG ++ACGVIG
Sbjct:    2 VKAVCVLAGSGDVKGVVHFEQQDEGAVSVEGKIEGLTDGLHGFHIHVFGDNTNGCMSAGSHFNPENKNHGAPGDTDRHVGDLGNV-TAEGGVAQFKITD--SLISLKGPNSIIGRTAVVHEKADDLGKGGNDESLKTGNAGGRLACGVIG 148          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_CALJA (Superoxide dismutase [Cu-Zn] OS=Callithrix jacchus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 3.354e-38
Identity = 77/152 (50.66%), Postives = 104/152 (68.42%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQ-EGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            +KAV  +      +G ++F+Q E +GP  + G++  L++G HGFH+H +GD    C S G HFNP  + HGGPED  RH GDLGN+  G DG AK++I D   +I L G +SIIGR++V+H+K DDLGK GN  SKK GNAG ++ACGVIG+
Sbjct:    3 MKAVCVLKGDGPVQGTINFEQKESNGPVKVWGSITGLAEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRKHGGPEDEERHVGDLGNVTAGKDGVAKVSIED--SVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLACGVIGI 152          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_RAT (Superoxide dismutase [Cu-Zn] OS=Rattus norvegicus GN=Sod1 PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 4.381e-38
Identity = 75/152 (49.34%), Postives = 101/152 (66.45%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGDG-PTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            +KAV  +      +G++HF+Q+  G P  + G +  L++G HGFH+H YGD    C + G HFNP  K HGGP D  RH GDLGN+  G DG A ++I D  ++I L G +SIIGR++V+H+K DDLGK GN  S K GNAG ++ACGVIG+
Sbjct:    3 MKAVCVLKGDGPVQGVIHFEQKASGEPVVVSGQITGLTEGEHGFHVHQYGDNTQGCTTAGPHFNPHSKKHGGPADEERHVGDLGNVAAGKDGVANVSIED--RVISLSGEHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_CANFA (Superoxide dismutase [Cu-Zn] OS=Canis familiaris GN=SOD1 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 5.721e-38
Identity = 75/151 (49.67%), Postives = 99/151 (65.56%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            +KAV  +  +   +G +HF Q+G GP  + GT+  L++G HGFH+H + D    C S G HFNP  K HGGP+D  RH GDLGN+  G DG A ++I D   LI L G  SIIGR++V+H+K DDLGK  N  S + GNAG ++ACGVIG+
Sbjct:    3 MKAVCVLKGQGPVEGTIHFVQKGSGPVVVSGTITGLTEGEHGFHVHQFEDXTQGCTSAGPHFNPLSKKHGGPKDQERHVGDLGNVTAGKDGVAIVSIED--SLIALSGDYSIIGRTMVVHEKRDDLGKGDNEESTQTGNAGSRLACGVIGI 151          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_MOUSE (Superoxide dismutase [Cu-Zn] OS=Mus musculus GN=Sod1 PE=1 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 7.472e-38
Identity = 76/152 (50.00%), Postives = 100/152 (65.79%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGDG-PTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            +KAV  +      +G +HF+Q+  G P  + G +  L++G HGFH+H YGD    C S G HFNP  K HGGP D  RH GDLGN+  G DG A ++I D  ++I L G +SIIGR++V+H+K DDLGK GN  S K GNAG ++ACGVIG+
Sbjct:    3 MKAVCVLKGDGPVQGTIHFEQKASGEPVVLSGQITGLTEGQHGFHVHQYGDNTQGCTSAGPHFNPHSKKHGGPADEERHVGDLGNVTAGKDGVANVSIED--RVISLSGEHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODCP_VITVI (Superoxide dismutase [Cu-Zn], chloroplastic OS=Vitis vinifera GN=SODCP PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 7.472e-38
Identity = 77/152 (50.66%), Postives = 100/152 (65.79%), Query Frame = 3
Query:   84 TVKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            T KAVA +      +G++   QE DGPTT+   +  L+ G HGFH+H +GD  + C STG HFNP    HG PED +RHAGDLGNI    +G A+  IVD    IPL GPN++IGR++V+H+  DDLGK G+  S   GNAG ++ACGV+GL
Sbjct:   60 TKKAVAVLKGTSSVEGVVTLSQEDDGPTTVSVRITGLTPGNHGFHLHEFGDTTNGCMSTGAHFNPNGMTHGAPEDDVRHAGDLGNIIANAEGVAEATIVDTQ--IPLSGPNAVIGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 209          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODCP_PEA (Superoxide dismutase [Cu-Zn], chloroplastic OS=Pisum sativum GN=SODCP PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 7.472e-38
Identity = 75/150 (50.00%), Postives = 100/150 (66.67%), Query Frame = 3
Query:   90 KAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            KAV+ +      +G++   Q+ +GPTT+   +  L+ G HGFH+H YGD  + C STG HFNP +  HG PED IRHAGDLGNI    +G A+  IVD    IPL GPNS++GR++V+H+  DDLGK G+  S   GNAG ++ACGV+GL
Sbjct:   52 KAVSVLKGTSAVEGVVTLTQDDEGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVANAEGVAEATIVDNQ--IPLTGPNSVVGRALVVHELQDDLGKGGHELSLSTGNAGGRLACGVVGL 199          
The following BLAST results are available for this feature:
BLAST of CX288704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODC_BRUPA5.175e-3956.64Superoxide dismutase [Cu-Zn] OS=Brugia pahangi GN=... [more]
SODC_CARCR6.758e-3952.90Superoxide dismutase [Cu-Zn] OS=Caretta caretta PE... [more]
SODCP_PINSY1.506e-3854.35Superoxide dismutase [Cu-Zn], chloroplastic (Fragm... [more]
SODC2_XENLA2.568e-3852.00Superoxide dismutase [Cu-Zn] B OS=Xenopus laevis G... [more]
SODC_CALJA3.354e-3850.66Superoxide dismutase [Cu-Zn] OS=Callithrix jacchus... [more]
SODC_RAT4.381e-3849.34Superoxide dismutase [Cu-Zn] OS=Rattus norvegicus ... [more]
SODC_CANFA5.721e-3849.67Superoxide dismutase [Cu-Zn] OS=Canis familiaris G... [more]
SODC_MOUSE7.472e-3850.00Superoxide dismutase [Cu-Zn] OS=Mus musculus GN=So... [more]
SODCP_VITVI7.472e-3850.66Superoxide dismutase [Cu-Zn], chloroplastic OS=Vit... [more]
SODCP_PEA7.472e-3850.00Superoxide dismutase [Cu-Zn], chloroplastic OS=Pis... [more]

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Properties
Property NameValue
Genbank descriptionC02003D12SK IF1 Citrus clementina cDNA clone C02003D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288704 ID=CX288704; Name=CX288704; organism=Citrus clementina; type=EST; length=589bp
AGAGAACGGCTTCAATCAAGTTGGTAGCCCTTTTAGCTGTTTTATTCTGT
TTTGTCAATGCAACCAAATCAAGAGGAGTCCCAACGGTGAAAGCAGTTGC
TTATGTTATTAGCAAATGGGGTCCCAAGGGAATTCTCCATTTTAAACAGG
AAGGAGATGGCCCAACAACTATAAAGGGGACACTCTATTACCTTTCGCAG
GGTGCTCACGGATTTCATATACACGTCTACGGGGACATGGCCCATTTCTG
CCAGTCAACTGGCGATCACTTTAACCCATTTCGCAAAGATCATGGTGGCC
CAGAGGATTGGATTCGTCACGCCGGTGATTTAGGAAATATCTATGTTGGT
TTTGATGGTAAAGCCAAGATCAACATTGTTGACAAGCATAAGCTGATTCC
TCTTGTTGGGCCAAATTCCATTATCGGAAGGTCTGTCGTGATACACGATA
AGCATGATGATCTTGGCAAGGTTGGAAATTACCACAGCAAAAAGAATGGA
AATGCTGGTGACAAAATAGCTTGTGGCGTCATTGGTCTCCAAGCATGAAT
GGTCTCGGTTTGGACTCTATATGATAAATACTTTACCTG
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