CX288704

Overview
NameCX288704
Unique NameCX288704
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length589
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_CEBAP (Superoxide dismutase [Cu-Zn] OS=Cebus apella GN=SOD1 PE=2 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 1.275e-37
Identity = 76/152 (50.00%), Postives = 103/152 (67.76%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQ-EGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            +KAV  +      +G ++F+Q E +GP  + G++  L++G HGFH+H +GD    C S G HFNP  + HGGPED  RH GDLGN+  G DG AK++I D   +I L G +SIIGR++V+H+K DDLGK GN  S K GNAG ++ACGVIG+
Sbjct:    3 MKAVCVLKGDGPVQGTINFEQKESNGPVKVWGSITGLAEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRKHGGPEDEERHVGDLGNVTAGKDGVAKVSIED--SVISLSGDHSIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODCP_MEDSA (Superoxide dismutase [Cu-Zn], chloroplastic OS=Medicago sativa GN=SODCP PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.275e-37
Identity = 77/150 (51.33%), Postives = 99/150 (66.00%), Query Frame = 3
Query:   90 KAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            KAVA +      +G++   QE + PTT+   +  L+ G HGFH+H YGD  + C STG HFNP +  HG PED IRHAGDLGNI    +G A+  IVD    IPL GPNS+IGR++V+H+  DDLGK G+  S   GNAG ++ACGV+GL
Sbjct:   52 KAVAVLKGNSTVEGVVTLTQENESPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNQLTHGAPEDEIRHAGDLGNIIADANGVAEATIVDNQ--IPLTGPNSVIGRALVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGL 199          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_SCHMA (Superoxide dismutase [Cu-Zn] OS=Schistosoma mansoni GN=SOD PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.665e-37
Identity = 79/154 (51.30%), Postives = 99/154 (64.29%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGD-GPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQA 545
            +KAV  +    G KG++ F QE D GP  +      L  G HGFH+H +GD  + C S G HFNP +++HG PED IRH GDLGN+  G DG A  N  D  KLI L G +SIIGR++VIH+  DDLG+ G+  SK  GNAG ++ACGVIGL A
Sbjct:    1 MKAVCVMTGTAGVKGVVKFTQETDNGPVHVHAEFSGLKAGKHGFHVHEFGDTTNGCTSAGAHFNPTKQEHGAPEDSIRHVGDLGNVVAGADGNAVYNATD--KLISLNGSHSIIGRTMVIHENEDDLGRGGHELSKVTGNAGGRLACGVIGLAA 152          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODCP_SOLCS (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solidago canadensis var. scabra GN=SODCP PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.174e-37
Identity = 77/152 (50.66%), Postives = 98/152 (64.47%), Query Frame = 3
Query:   84 TVKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            T KAVA +      +G++   QE DGPTT+   +  L+ G HGFH+H +GD  + C STG HFNP    HG PED  RHAGDLGNI    DG A+  IVD    IPL GPN+++GR+ V+H+  DDLGK G+  S   GNAG ++ACGV+GL
Sbjct:   68 TKKAVAVLKGTSSVEGVVTLTQEEDGPTTVNVKITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNGNTHGAPEDENRHAGDLGNIIANADGVAEATIVDNQ--IPLTGPNAVVGRAFVVHELADDLGKGGHELSLSTGNAGGRLACGVVGL 217          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_MACMU (Superoxide dismutase [Cu-Zn] OS=Macaca mulatta GN=SOD1 PE=2 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 2.839e-37
Identity = 75/152 (49.34%), Postives = 103/152 (67.76%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQ-EGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            +KAV  +      +G ++F+Q E +GP  + G++  L++G HGFH+H +GD    C S G HFNP  + HGGP+D  RH GDLGN+  G DG AK++  D   +I L G +SIIGR++V+H+K DDLGK GN  SKK GNAG ++ACGVIG+
Sbjct:    3 MKAVCVLKGDSPVQGTINFEQKESNGPVKVWGSITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFED--SVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLACGVIGI 152          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_MACFU (Superoxide dismutase [Cu-Zn] OS=Macaca fuscata fuscata GN=SOD1 PE=2 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 2.839e-37
Identity = 75/152 (49.34%), Postives = 103/152 (67.76%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQ-EGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            +KAV  +      +G ++F+Q E +GP  + G++  L++G HGFH+H +GD    C S G HFNP  + HGGP+D  RH GDLGN+  G DG AK++  D   +I L G +SIIGR++V+H+K DDLGK GN  SKK GNAG ++ACGVIG+
Sbjct:    3 MKAVCVLKGDSPVQGTINFEQKESNGPVKVWGSITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFED--SVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLACGVIGI 152          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_MACFA (Superoxide dismutase [Cu-Zn] OS=Macaca fascicularis GN=SOD1 PE=2 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 2.839e-37
Identity = 75/152 (49.34%), Postives = 103/152 (67.76%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQ-EGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            +KAV  +      +G ++F+Q E +GP  + G++  L++G HGFH+H +GD    C S G HFNP  + HGGP+D  RH GDLGN+  G DG AK++  D   +I L G +SIIGR++V+H+K DDLGK GN  SKK GNAG ++ACGVIG+
Sbjct:    3 MKAVCVLKGDSPVQGTINFEQKESNGPVKVWGSITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFED--SVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLACGVIGI 152          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_HALRO (Superoxide dismutase [Cu-Zn] OS=Halocynthia roretzi PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 2.839e-37
Identity = 77/152 (50.66%), Postives = 102/152 (67.11%), Query Frame = 3
Query:   84 TVKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            ++KAV  ++     KG L+FKQ+  G  T+ G +  L  G HGFHIH YGD+ + C S+G HFNPF++ HG PED IRH GDLGNI     G A +NI D  ++I L G +SIIGR+VV+H   DDLGK G+  SK  G+AG +++CGVIG+
Sbjct:    2 SIKAVCVLVGS--VKGTLNFKQDAIGSCTVTGEVSGLIPGKHGFHIHEYGDLTNGCTSSGGHFNPFKQIHGAPEDDIRHVGDLGNITADSSGVATVNITD--RMISLTGEHSIIGRAVVVHAGEDDLGKGGHEDSKTTGHAGGRLSCGVIGI 149          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODCP_ORYSJ (Superoxide dismutase [Cu-Zn], chloroplastic OS=Oryza sativa subsp. japonica GN=SODCP PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.839e-37
Identity = 76/152 (50.00%), Postives = 99/152 (65.13%), Query Frame = 3
Query:   84 TVKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            T KAVA +      +G++   Q+  GPTT+   +  L+ G HGFH+H +GD  + C STG HFNP    HG PED +RHAGDLGNI    +G A+  IVDK   IPL GPNS++GR+ V+H+  DDLGK G+  S   GNAG ++ACGV+GL
Sbjct:   59 TKKAVAVLKGTSQVEGVVTLTQDDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPHFNPNNLTHGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQ--IPLSGPNSVVGRAFVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGL 208          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODCP_PETHY (Superoxide dismutase [Cu-Zn], chloroplastic OS=Petunia hybrida GN=SODCP PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.708e-37
Identity = 75/152 (49.34%), Postives = 99/152 (65.13%), Query Frame = 3
Query:   84 TVKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            T KAVA +      +G++   Q+ DGPTT+K  +  L+ G HGFH+H +GD  + C STG HFNP    HG P D +RHAGDLGNI     G A+  +VD    IPL GPNS++GR++V+H+  DDLGK G+  S   GNAG ++ACGV+GL
Sbjct:   67 TKKAVAVLKGTSNVEGVVTLTQDDDGPTTVKVRITGLAPGLHGFHLHEFGDTTNGCMSTGPHFNPNGLTHGAPGDEVRHAGDLGNIEANASGVAEATLVDNQ--IPLSGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 216          
The following BLAST results are available for this feature:
BLAST of CX288704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODC_CEBAP1.275e-3750.00Superoxide dismutase [Cu-Zn] OS=Cebus apella GN=SO... [more]
SODCP_MEDSA1.275e-3751.33Superoxide dismutase [Cu-Zn], chloroplastic OS=Med... [more]
SODC_SCHMA1.665e-3751.30Superoxide dismutase [Cu-Zn] OS=Schistosoma manson... [more]
SODCP_SOLCS2.174e-3750.66Superoxide dismutase [Cu-Zn], chloroplastic OS=Sol... [more]
SODC_MACMU2.839e-3749.34Superoxide dismutase [Cu-Zn] OS=Macaca mulatta GN=... [more]
SODC_MACFU2.839e-3749.34Superoxide dismutase [Cu-Zn] OS=Macaca fuscata fus... [more]
SODC_MACFA2.839e-3749.34Superoxide dismutase [Cu-Zn] OS=Macaca fasciculari... [more]
SODC_HALRO2.839e-3750.66Superoxide dismutase [Cu-Zn] OS=Halocynthia roretz... [more]
SODCP_ORYSJ2.839e-3750.00Superoxide dismutase [Cu-Zn], chloroplastic OS=Ory... [more]
SODCP_PETHY3.708e-3749.34Superoxide dismutase [Cu-Zn], chloroplastic OS=Pet... [more]

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Properties
Property NameValue
Genbank descriptionC02003D12SK IF1 Citrus clementina cDNA clone C02003D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288704 ID=CX288704; Name=CX288704; organism=Citrus clementina; type=EST; length=589bp
AGAGAACGGCTTCAATCAAGTTGGTAGCCCTTTTAGCTGTTTTATTCTGT
TTTGTCAATGCAACCAAATCAAGAGGAGTCCCAACGGTGAAAGCAGTTGC
TTATGTTATTAGCAAATGGGGTCCCAAGGGAATTCTCCATTTTAAACAGG
AAGGAGATGGCCCAACAACTATAAAGGGGACACTCTATTACCTTTCGCAG
GGTGCTCACGGATTTCATATACACGTCTACGGGGACATGGCCCATTTCTG
CCAGTCAACTGGCGATCACTTTAACCCATTTCGCAAAGATCATGGTGGCC
CAGAGGATTGGATTCGTCACGCCGGTGATTTAGGAAATATCTATGTTGGT
TTTGATGGTAAAGCCAAGATCAACATTGTTGACAAGCATAAGCTGATTCC
TCTTGTTGGGCCAAATTCCATTATCGGAAGGTCTGTCGTGATACACGATA
AGCATGATGATCTTGGCAAGGTTGGAAATTACCACAGCAAAAAGAATGGA
AATGCTGGTGACAAAATAGCTTGTGGCGTCATTGGTCTCCAAGCATGAAT
GGTCTCGGTTTGGACTCTATATGATAAATACTTTACCTG
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