CX288704

Overview
NameCX288704
Unique NameCX288704
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length589
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODCP_ZANAE (Superoxide dismutase [Cu-Zn], chloroplastic OS=Zantedeschia aethiopica GN=SODCP PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.326e-37
Identity = 77/152 (50.66%), Postives = 97/152 (63.82%), Query Frame = 3
Query:   84 TVKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            T KAVA +       G++   QE DGPTT+   +  L+ G HGFH+H YGD  + C STG HFNP +  HG P D +RHAGDLGNI    DG A+  IVD    IPL G NS++GR+ V+H+  DDLGK G+  S   GNAG ++ACGV+GL
Sbjct:   64 TKKAVAVLKGTSQVDGVVTLVQEDDGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGSHFNPNKLTHGAPMDVVRHAGDLGNIVANVDGLAEATIVDDQ--IPLSGSNSVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 213          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODE_BRUPA (Extracellular superoxide dismutase [Cu-Zn] OS=Brugia pahangi PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.079e-36
Identity = 81/158 (51.27%), Postives = 104/158 (65.82%), Query Frame = 3
Query:   84 TVKAVAYVISKWGP-KGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGK-VGNY--HSKKNGNAGDKIACGVIGLQA 545
            T  A+A + S  G   G +HF+Q+ +  TTI G +  L+ G HGFH+H YGD  + C S G HFNP+ K HG P D +RH GDLGNI  G DG A I+I DKH  + L+GPNSIIGRS+V+H   DDLGK VG+    S K GNAG ++ACG++ + A
Sbjct:   45 TATAIAVLHSDNGNINGTIHFQQDKNS-TTISGEIKGLTPGLHGFHVHQYGDTTNGCISAGPHFNPYNKTHGDPTDEMRHVGDLGNIVAGADGTAHIDISDKH--VQLLGPNSIIGRSLVVHADQDDLGKGVGDKKDESLKTGNAGGRVACGIVAISA 199          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_RABIT (Superoxide dismutase [Cu-Zn] OS=Oryctolagus cuniculus GN=SOD1 PE=1 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 1.079e-36
Identity = 73/150 (48.67%), Postives = 97/150 (64.67%), Query Frame = 3
Query:   90 KAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            KAV  +      +  +HF+Q+G GP  +KG +  L++G H FH+H +GD    C S G HFNP  K HGGP+D  RH GDLGN+  G +G A + I D   +I L G  S+IGR++V+H+K DDLGK GN  S K GNAG ++ACGVIG+
Sbjct:    4 KAVCVLKGDGPVEATIHFEQKGTGPVVVKGRITGLTEGLHEFHVHQFGDNRQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTAGSNGVADVLIED--SVISLSGDMSVIGRTLVVHEKEDDLGKGGNDESTKTGNAGSRLACGVIGI 151          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_HYLLA (Superoxide dismutase [Cu-Zn] OS=Hylobates lar GN=SOD1 PE=2 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 1.079e-36
Identity = 75/152 (49.34%), Postives = 102/152 (67.11%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQ-EGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            +KAV  +      +GI++F+Q E +GP  + G +  L++G HGFH+H +GD    C S G HFNP  + HGGP+D  RH GDLGN+    DG AK++I D   +I L G +SIIGR++V+H+K DDLGK GN  S K GNAG ++ACGVIG+
Sbjct:    3 MKAVCVLKGDSPVQGIINFEQKESNGPVKVYGRITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVAKVSIED--SVISLSGDHSIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODCP_ARATH (Superoxide dismutase [Cu-Zn], chloroplastic OS=Arabidopsis thaliana GN=SODCP PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.079e-36
Identity = 76/150 (50.67%), Postives = 96/150 (64.00%), Query Frame = 3
Query:   90 KAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            KAVA +      +G++   Q+  GPTT+   +  L+ G HGFH+H +GD  + C STG HFNP    HG PED  RHAGDLGNI    DG A+  IVD    IPL GPNS++GR+ V+H+  DDLGK G+  S   GNAG ++ACGVIGL
Sbjct:   66 KAVAVLKGTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQ--IPLTGPNSVVGRAFVVHELKDDLGKGGHELSLTTGNAGGRLACGVIGL 213          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_PRIGL (Superoxide dismutase [Cu-Zn] OS=Prionace glauca GN=sod1 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.409e-36
Identity = 72/151 (47.68%), Postives = 100/151 (66.23%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            +KAV  +       G + F+Q  DGP T+KG++  L+ G HGFH+H +GD  + C S G H+NPF K+HGGP+D  RH GDLGN+    +G A+  I D+   + L G  SIIGR++V+H+K DDLGK G+  S + GNAG ++ACGVIG+
Sbjct:    1 MKAVCVLKGTGEVTGTVLFEQAADGPVTLKGSITGLTPGKHGFHVHAFGDNTNGCISAGPHYNPFSKNHGGPDDEERHVGDLGNVEANGNGVAEFEIKDRQ--LHLSGERSIIGRTLVVHEKEDDLGKGGDEESLRTGNAGSRLACGVIGI 149          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_HORSE (Superoxide dismutase [Cu-Zn] OS=Equus caballus GN=SOD1 PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.409e-36
Identity = 73/152 (48.03%), Postives = 102/152 (67.11%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGDG-PTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            +KAV  +       G++HF+Q+ +G P  +KG +  L++G HGFH+H +GD    C + G HFNP  K HGGP+D  RH GDLGN+    +GKA +++  K  +I L G +SIIGR++V+H+K DDLGK GN  S K GNAG ++ACGVIG+
Sbjct:    3 LKAVCVLKGDGPVHGVIHFEQQQEGGPVVLKGFIEGLTKGDHGFHVHEFGDNTQGCTTAGAHFNPLSKKHGGPKDEERHVGDLGNVTADENGKADVDM--KDSVISLSGKHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_ONCVO (Superoxide dismutase [Cu-Zn] OS=Onchocerca volvulus GN=sod-1 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.404e-36
Identity = 79/143 (55.24%), Postives = 97/143 (67.83%), Query Frame = 3
Query:  129 GILHFKQEGDG-PTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGK-VG--NYHSKKNGNAGDKIACGVIGLQA 545
            GI+ FKQ+ +G PTT+ G +  L+ G HGFHIH YGD  + C S G HFNP+ K HG   D IRH GDLGNI  G DG A I+I D+H  I L+GPNSIIGRS+V+H   DDLGK VG     S K GNAG ++ACG++ + A
Sbjct:   16 GIIRFKQDKEGLPTTVTGEVKGLTPGLHGFHIHQYGDTTNGCISAGPHFNPYNKTHGDRTDEIRHVGDLGNIEAGADGTAHISISDQH--IQLLGPNSIIGRSIVVHADQDDLGKGVGAKKDESLKTGNAGARVACGIVAIGA 156          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_CHICK (Superoxide dismutase [Cu-Zn] OS=Gallus gallus GN=SOD1 PE=1 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 2.404e-36
Identity = 74/152 (48.68%), Postives = 100/152 (65.79%), Query Frame = 3
Query:   84 TVKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            T+KAV  +      +G++HF+Q+G GP  + G +  LS G HGFH+H +GD  + C S G HFNP  K HGGP+D  RH GDLGN+     G A++ I D   +I L GP+ IIGR++V+H K DDLG+ G+  SK  GNAG ++ACGVIG+
Sbjct:    3 TLKAVCVMKGDAPVEGVIHFQQQGSGPVKVTGKITGLSDGDHGFHVHEFGDNTNGCTSAGAHFNPEGKQHGGPKDADRHVGDLGNV-TAKGGVAEVEIED--SVISLTGPHCIIGRTMVVHAKSDDLGRGGDNESKLTGNAGPRLACGVIGI 151          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC5_DICDI (Superoxide dismutase [Cu-Zn] 5 OS=Dictyostelium discoideum GN=sodE PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.355e-36
Identity = 75/146 (51.37%), Postives = 94/146 (64.38%), Query Frame = 3
Query:  105 VISKWGPKGILHFKQ-EGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            VI   G  GI++FKQ +   P  I G +  L +G HGFH+H +GD  + C S G HFNPF+K+HG P D  RH GDLGNI    D K+ INI D   +I L G NSIIGRS+V+HDK DDLG+  +  SK  GNAG ++ CG+I L
Sbjct:    6 VIKGDGVDGIINFKQNDNKSPVIISGVISGLKEGKHGFHVHEFGDTTNGCLSAGAHFNPFKKEHGSPNDENRHVGDLGNIESNKDKKSIINITD--NIITLFGQNSIIGRSIVVHDKEDDLGRGNSQDSKITGNAGSRLGCGIIAL 149          
The following BLAST results are available for this feature:
BLAST of CX288704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODCP_ZANAE6.326e-3750.66Superoxide dismutase [Cu-Zn], chloroplastic OS=Zan... [more]
SODE_BRUPA1.079e-3651.27Extracellular superoxide dismutase [Cu-Zn] OS=Brug... [more]
SODC_RABIT1.079e-3648.67Superoxide dismutase [Cu-Zn] OS=Oryctolagus cunicu... [more]
SODC_HYLLA1.079e-3649.34Superoxide dismutase [Cu-Zn] OS=Hylobates lar GN=S... [more]
SODCP_ARATH1.079e-3650.67Superoxide dismutase [Cu-Zn], chloroplastic OS=Ara... [more]
SODC_PRIGL1.409e-3647.68Superoxide dismutase [Cu-Zn] OS=Prionace glauca GN... [more]
SODC_HORSE1.409e-3648.03Superoxide dismutase [Cu-Zn] OS=Equus caballus GN=... [more]
SODC_ONCVO2.404e-3655.24Superoxide dismutase [Cu-Zn] OS=Onchocerca volvulu... [more]
SODC_CHICK2.404e-3648.68Superoxide dismutase [Cu-Zn] OS=Gallus gallus GN=S... [more]
SODC5_DICDI5.355e-3651.37Superoxide dismutase [Cu-Zn] 5 OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionC02003D12SK IF1 Citrus clementina cDNA clone C02003D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288704 ID=CX288704; Name=CX288704; organism=Citrus clementina; type=EST; length=589bp
AGAGAACGGCTTCAATCAAGTTGGTAGCCCTTTTAGCTGTTTTATTCTGT
TTTGTCAATGCAACCAAATCAAGAGGAGTCCCAACGGTGAAAGCAGTTGC
TTATGTTATTAGCAAATGGGGTCCCAAGGGAATTCTCCATTTTAAACAGG
AAGGAGATGGCCCAACAACTATAAAGGGGACACTCTATTACCTTTCGCAG
GGTGCTCACGGATTTCATATACACGTCTACGGGGACATGGCCCATTTCTG
CCAGTCAACTGGCGATCACTTTAACCCATTTCGCAAAGATCATGGTGGCC
CAGAGGATTGGATTCGTCACGCCGGTGATTTAGGAAATATCTATGTTGGT
TTTGATGGTAAAGCCAAGATCAACATTGTTGACAAGCATAAGCTGATTCC
TCTTGTTGGGCCAAATTCCATTATCGGAAGGTCTGTCGTGATACACGATA
AGCATGATGATCTTGGCAAGGTTGGAAATTACCACAGCAAAAAGAATGGA
AATGCTGGTGACAAAATAGCTTGTGGCGTCATTGGTCTCCAAGCATGAAT
GGTCTCGGTTTGGACTCTATATGATAAATACTTTACCTG
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