CX288704

Overview
NameCX288704
Unique NameCX288704
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length589
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_PIG (Superoxide dismutase [Cu-Zn] OS=Sus scrofa GN=SOD1 PE=1 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 1.558e-35
Identity = 72/150 (48.00%), Postives = 98/150 (65.33%), Query Frame = 3
Query:   90 KAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            KAV  +      +G ++F+ +G+    + GT+  L++G HGFH+H +GD    C S G HFNP  K HGGP+D  RH GDLGN+  G DG A + I D   +I L G +SIIGR++V+H+K DDLG+ GN  S K GNAG ++ACGVIG+
Sbjct:    4 KAVCVLKGDGPVQGTIYFELKGEKTVLVTGTIKGLAEGDHGFHVHQFGDNTQGCTSAGPHFNPESKKHGGPKDQERHVGDLGNVTAGKDGVATVYIED--SVIALSGDHSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGI 151          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_DROVI (Superoxide dismutase [Cu-Zn] OS=Drosophila virilis GN=Sod PE=3 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 1.558e-35
Identity = 77/152 (50.66%), Postives = 99/152 (65.13%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGDG-PTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            VKAV  +      KG + F+QEG+G P  + G +  L++G HGFH+H +GD  + C S+G HFNP++K+HG P D  RH GDLGNI    DG   +NI D    I L+G NSIIGR+VV+H   DDLGK G+  SK  GNAG +I CGVIG+
Sbjct:    3 VKAVCVI--NGDAKGTVFFEQEGEGCPVKVTGEVTGLAKGQHGFHVHEFGDNTNGCMSSGPHFNPYQKEHGAPTDENRHLGDLGNIIANGDGPTPVNICDCK--ITLLGANSIIGRTVVVHADPDDLGKGGHELSKTTGNAGARIGCGVIGI 150          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_DANRE (Superoxide dismutase [Cu-Zn] OS=Danio rerio GN=sod1 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.035e-35
Identity = 75/151 (49.67%), Postives = 96/151 (63.58%), Query Frame = 3
Query:   90 KAVAYVISKWGPKGILHFKQEGDG-PTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            KAV  +       G ++F QEG+  P  + G +  L+ G HGFH+H +GD  + C S G HFNP  K HGGP D +RH GDLGN+     G AKI I D   ++ L G +SIIGR++VIH+K DDLGK GN  S K GNAG ++ACGVIG+
Sbjct:    4 KAVCVLKGTGEVTGTVYFNQEGEKKPVKVTGEITGLTPGKHGFHVHAFGDNTNGCISAGPHFNPHDKTHGGPTDSVRHVGDLGNVTADASGVAKIEIED--AMLTLSGQHSIIGRTMVIHEKEDDLGKGGNEESLKTGNAGGRLACGVIGI 152          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_PANTR (Superoxide dismutase [Cu-Zn] OS=Pan troglodytes GN=SOD1 PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 2.658e-35
Identity = 73/151 (48.34%), Postives = 100/151 (66.23%), Query Frame = 3
Query:   90 KAVAYVISKWGPKGILHFKQ-EGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            KAV  +      +GI++F+Q E +GP  + G++  L++G HGFH+H +GD    C S G HFNP  + HGGP+D  RH GDLGN+    DG A ++I D   +I L G + IIGR++V+H+K DDLGK GN  S K GNAG ++ACGVIG+
Sbjct:    4 KAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIED--SVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_HUMAN (Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 2.658e-35
Identity = 73/151 (48.34%), Postives = 100/151 (66.23%), Query Frame = 3
Query:   90 KAVAYVISKWGPKGILHFKQ-EGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            KAV  +      +GI++F+Q E +GP  + G++  L++G HGFH+H +GD    C S G HFNP  + HGGP+D  RH GDLGN+    DG A ++I D   +I L G + IIGR++V+H+K DDLGK GN  S K GNAG ++ACGVIG+
Sbjct:    4 KAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIED--SVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_PONPY (Superoxide dismutase [Cu-Zn] OS=Pongo pygmaeus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 3.471e-35
Identity = 71/139 (51.08%), Postives = 96/139 (69.06%), Query Frame = 3
Query:  126 KGILHFKQ-EGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            KGI++F+Q E +GP  + G++  L++G HGFH+H +GD    C S G HFNP  + HGGP+D  RH GDLGN+    DG A ++I D   +I L G + IIGR++V+H+K DDLGK GN  S K GNAG ++ACGVIG+
Sbjct:   17 KGIINFEQKERNGPVKVWGSIEGLTEGLHGFHVHEFGDNTVGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVASVSIED--SVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 153          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_BOSMU (Superoxide dismutase [Cu-Zn] OS=Bos mutus grunniens GN=SOD1 PE=2 SV=3)

HSP 1 Score: 147.517 bits (371), Expect = 4.533e-35
Identity = 73/150 (48.67%), Postives = 98/150 (65.33%), Query Frame = 3
Query:   90 KAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            KAV  +      +G +HF+ +GD    + G++  L++G HGFH+H +GD    C S G HFNP  K HGGP+D  RH GDLGN+    +G A ++IVD   LI L G  SIIGR++V+H+K DDLG+ GN  S K GNAG ++ACGVIG+
Sbjct:    4 KAVCVLKGDGPVQGTIHFEAKGD-TVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAVVDIVD--SLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGI 150          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC1_XENLA (Superoxide dismutase [Cu-Zn] A OS=Xenopus laevis GN=sod1-A PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 4.533e-35
Identity = 74/150 (49.33%), Postives = 95/150 (63.33%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIG 536
            VKAV  +      KG++ F+Q+ DG  T++G +  L+ G HGFHIHV+GD  + C S G HFNP  K+HG P+D  RH GDLGN+     G A+    D    I L G  SIIGR+ V+H+K DDLGK G+  S K GNAG ++ACGVIG
Sbjct:    2 VKAVCVLAGSGDVKGVVRFEQQDDGDVTVEGKIEGLTDGNHGFHIHVFGDNTNGCLSAGPHFNPQNKNHGSPKDADRHVGDLGNV-TAEGGVAQFKFTDPQ--ISLKGERSIIGRTAVVHEKQDDLGKGGDDESLKTGNAGGRLACGVIG 148          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_XIPGL (Superoxide dismutase [Cu-Zn] OS=Xiphias gladius GN=sod1 PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 7.733e-35
Identity = 76/153 (49.67%), Postives = 98/153 (64.05%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYY-LSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 542
            +KAV  +       G ++F+QEG+     KG +   L+ G HGFH+H +GD  + C S G HFNP  K H GP+D  RH GDLGN+    +G AKI+I DK   I L GP SIIGR++VIH+K DDLG+ GN  S K GNAG ++ACGVIG +
Sbjct:    3 LKAVCVLRGAGETTGTVYFEQEGNANAVGKGIILKGLTPGEHGFHVHGFGDNTNGCISAGPHFNPASKKHAGPKDEDRHVGDLGNVTADANGVAKIDITDK---ISLTGPYSIIGRTMVIHEKADDLGRGGNEESLKTGNAGSRLACGVIGTE 152          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_BOVIN (Superoxide dismutase [Cu-Zn] OS=Bos taurus GN=SOD1 PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 7.733e-35
Identity = 73/150 (48.67%), Postives = 98/150 (65.33%), Query Frame = 3
Query:   90 KAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            KAV  +      +G +HF+ +GD    + G++  L++G HGFH+H +GD    C S G HFNP  K HGGP+D  RH GDLGN+    +G A ++IVD   LI L G  SIIGR++V+H+K DDLG+ GN  S K GNAG ++ACGVIG+
Sbjct:    4 KAVCVLKGDGPVQGTIHFEAKGD-TVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAIVDIVD--PLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGI 150          
The following BLAST results are available for this feature:
BLAST of CX288704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODC_PIG1.558e-3548.00Superoxide dismutase [Cu-Zn] OS=Sus scrofa GN=SOD1... [more]
SODC_DROVI1.558e-3550.66Superoxide dismutase [Cu-Zn] OS=Drosophila virilis... [more]
SODC_DANRE2.035e-3549.67Superoxide dismutase [Cu-Zn] OS=Danio rerio GN=sod... [more]
SODC_PANTR2.658e-3548.34Superoxide dismutase [Cu-Zn] OS=Pan troglodytes GN... [more]
SODC_HUMAN2.658e-3548.34Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SO... [more]
SODC_PONPY3.471e-3551.08Superoxide dismutase [Cu-Zn] OS=Pongo pygmaeus GN=... [more]
SODC_BOSMU4.533e-3548.67Superoxide dismutase [Cu-Zn] OS=Bos mutus grunnien... [more]
SODC1_XENLA4.533e-3549.33Superoxide dismutase [Cu-Zn] A OS=Xenopus laevis G... [more]
SODC_XIPGL7.733e-3549.67Superoxide dismutase [Cu-Zn] OS=Xiphias gladius GN... [more]
SODC_BOVIN7.733e-3548.67Superoxide dismutase [Cu-Zn] OS=Bos taurus GN=SOD1... [more]

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Properties
Property NameValue
Genbank descriptionC02003D12SK IF1 Citrus clementina cDNA clone C02003D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288704 ID=CX288704; Name=CX288704; organism=Citrus clementina; type=EST; length=589bp
AGAGAACGGCTTCAATCAAGTTGGTAGCCCTTTTAGCTGTTTTATTCTGT
TTTGTCAATGCAACCAAATCAAGAGGAGTCCCAACGGTGAAAGCAGTTGC
TTATGTTATTAGCAAATGGGGTCCCAAGGGAATTCTCCATTTTAAACAGG
AAGGAGATGGCCCAACAACTATAAAGGGGACACTCTATTACCTTTCGCAG
GGTGCTCACGGATTTCATATACACGTCTACGGGGACATGGCCCATTTCTG
CCAGTCAACTGGCGATCACTTTAACCCATTTCGCAAAGATCATGGTGGCC
CAGAGGATTGGATTCGTCACGCCGGTGATTTAGGAAATATCTATGTTGGT
TTTGATGGTAAAGCCAAGATCAACATTGTTGACAAGCATAAGCTGATTCC
TCTTGTTGGGCCAAATTCCATTATCGGAAGGTCTGTCGTGATACACGATA
AGCATGATGATCTTGGCAAGGTTGGAAATTACCACAGCAAAAAGAATGGA
AATGCTGGTGACAAAATAGCTTGTGGCGTCATTGGTCTCCAAGCATGAAT
GGTCTCGGTTTGGACTCTATATGATAAATACTTTACCTG
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