CX288704
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_PIG (Superoxide dismutase [Cu-Zn] OS=Sus scrofa GN=SOD1 PE=1 SV=2) HSP 1 Score: 149.058 bits (375), Expect = 1.558e-35 Identity = 72/150 (48.00%), Postives = 98/150 (65.33%), Query Frame = 3 Query: 90 KAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539 KAV + +G ++F+ +G+ + GT+ L++G HGFH+H +GD C S G HFNP K HGGP+D RH GDLGN+ G DG A + I D +I L G +SIIGR++V+H+K DDLG+ GN S K GNAG ++ACGVIG+ Sbjct: 4 KAVCVLKGDGPVQGTIYFELKGEKTVLVTGTIKGLAEGDHGFHVHQFGDNTQGCTSAGPHFNPESKKHGGPKDQERHVGDLGNVTAGKDGVATVYIED--SVIALSGDHSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGI 151
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_DROVI (Superoxide dismutase [Cu-Zn] OS=Drosophila virilis GN=Sod PE=3 SV=2) HSP 1 Score: 149.058 bits (375), Expect = 1.558e-35 Identity = 77/152 (50.66%), Postives = 99/152 (65.13%), Query Frame = 3 Query: 87 VKAVAYVISKWGPKGILHFKQEGDG-PTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539 VKAV + KG + F+QEG+G P + G + L++G HGFH+H +GD + C S+G HFNP++K+HG P D RH GDLGNI DG +NI D I L+G NSIIGR+VV+H DDLGK G+ SK GNAG +I CGVIG+ Sbjct: 3 VKAVCVI--NGDAKGTVFFEQEGEGCPVKVTGEVTGLAKGQHGFHVHEFGDNTNGCMSSGPHFNPYQKEHGAPTDENRHLGDLGNIIANGDGPTPVNICDCK--ITLLGANSIIGRTVVVHADPDDLGKGGHELSKTTGNAGARIGCGVIGI 150
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_DANRE (Superoxide dismutase [Cu-Zn] OS=Danio rerio GN=sod1 PE=2 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 2.035e-35 Identity = 75/151 (49.67%), Postives = 96/151 (63.58%), Query Frame = 3 Query: 90 KAVAYVISKWGPKGILHFKQEGDG-PTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539 KAV + G ++F QEG+ P + G + L+ G HGFH+H +GD + C S G HFNP K HGGP D +RH GDLGN+ G AKI I D ++ L G +SIIGR++VIH+K DDLGK GN S K GNAG ++ACGVIG+ Sbjct: 4 KAVCVLKGTGEVTGTVYFNQEGEKKPVKVTGEITGLTPGKHGFHVHAFGDNTNGCISAGPHFNPHDKTHGGPTDSVRHVGDLGNVTADASGVAKIEIED--AMLTLSGQHSIIGRTMVIHEKEDDLGKGGNEESLKTGNAGGRLACGVIGI 152
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_PANTR (Superoxide dismutase [Cu-Zn] OS=Pan troglodytes GN=SOD1 PE=2 SV=2) HSP 1 Score: 148.288 bits (373), Expect = 2.658e-35 Identity = 73/151 (48.34%), Postives = 100/151 (66.23%), Query Frame = 3 Query: 90 KAVAYVISKWGPKGILHFKQ-EGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539 KAV + +GI++F+Q E +GP + G++ L++G HGFH+H +GD C S G HFNP + HGGP+D RH GDLGN+ DG A ++I D +I L G + IIGR++V+H+K DDLGK GN S K GNAG ++ACGVIG+ Sbjct: 4 KAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIED--SVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 152
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_HUMAN (Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2) HSP 1 Score: 148.288 bits (373), Expect = 2.658e-35 Identity = 73/151 (48.34%), Postives = 100/151 (66.23%), Query Frame = 3 Query: 90 KAVAYVISKWGPKGILHFKQ-EGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539 KAV + +GI++F+Q E +GP + G++ L++G HGFH+H +GD C S G HFNP + HGGP+D RH GDLGN+ DG A ++I D +I L G + IIGR++V+H+K DDLGK GN S K GNAG ++ACGVIG+ Sbjct: 4 KAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIED--SVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 152
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_PONPY (Superoxide dismutase [Cu-Zn] OS=Pongo pygmaeus GN=SOD1 PE=2 SV=3) HSP 1 Score: 147.902 bits (372), Expect = 3.471e-35 Identity = 71/139 (51.08%), Postives = 96/139 (69.06%), Query Frame = 3 Query: 126 KGILHFKQ-EGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539 KGI++F+Q E +GP + G++ L++G HGFH+H +GD C S G HFNP + HGGP+D RH GDLGN+ DG A ++I D +I L G + IIGR++V+H+K DDLGK GN S K GNAG ++ACGVIG+ Sbjct: 17 KGIINFEQKERNGPVKVWGSIEGLTEGLHGFHVHEFGDNTVGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVASVSIED--SVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 153
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_BOSMU (Superoxide dismutase [Cu-Zn] OS=Bos mutus grunniens GN=SOD1 PE=2 SV=3) HSP 1 Score: 147.517 bits (371), Expect = 4.533e-35 Identity = 73/150 (48.67%), Postives = 98/150 (65.33%), Query Frame = 3 Query: 90 KAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539 KAV + +G +HF+ +GD + G++ L++G HGFH+H +GD C S G HFNP K HGGP+D RH GDLGN+ +G A ++IVD LI L G SIIGR++V+H+K DDLG+ GN S K GNAG ++ACGVIG+ Sbjct: 4 KAVCVLKGDGPVQGTIHFEAKGD-TVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAVVDIVD--SLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGI 150
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC1_XENLA (Superoxide dismutase [Cu-Zn] A OS=Xenopus laevis GN=sod1-A PE=1 SV=2) HSP 1 Score: 147.517 bits (371), Expect = 4.533e-35 Identity = 74/150 (49.33%), Postives = 95/150 (63.33%), Query Frame = 3 Query: 87 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIG 536 VKAV + KG++ F+Q+ DG T++G + L+ G HGFHIHV+GD + C S G HFNP K+HG P+D RH GDLGN+ G A+ D I L G SIIGR+ V+H+K DDLGK G+ S K GNAG ++ACGVIG Sbjct: 2 VKAVCVLAGSGDVKGVVRFEQQDDGDVTVEGKIEGLTDGNHGFHIHVFGDNTNGCLSAGPHFNPQNKNHGSPKDADRHVGDLGNV-TAEGGVAQFKFTDPQ--ISLKGERSIIGRTAVVHEKQDDLGKGGDDESLKTGNAGGRLACGVIG 148
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_XIPGL (Superoxide dismutase [Cu-Zn] OS=Xiphias gladius GN=sod1 PE=1 SV=2) HSP 1 Score: 146.747 bits (369), Expect = 7.733e-35 Identity = 76/153 (49.67%), Postives = 98/153 (64.05%), Query Frame = 3 Query: 87 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYY-LSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 542 +KAV + G ++F+QEG+ KG + L+ G HGFH+H +GD + C S G HFNP K H GP+D RH GDLGN+ +G AKI+I DK I L GP SIIGR++VIH+K DDLG+ GN S K GNAG ++ACGVIG + Sbjct: 3 LKAVCVLRGAGETTGTVYFEQEGNANAVGKGIILKGLTPGEHGFHVHGFGDNTNGCISAGPHFNPASKKHAGPKDEDRHVGDLGNVTADANGVAKIDITDK---ISLTGPYSIIGRTMVIHEKADDLGRGGNEESLKTGNAGSRLACGVIGTE 152
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_BOVIN (Superoxide dismutase [Cu-Zn] OS=Bos taurus GN=SOD1 PE=1 SV=2) HSP 1 Score: 146.747 bits (369), Expect = 7.733e-35 Identity = 73/150 (48.67%), Postives = 98/150 (65.33%), Query Frame = 3 Query: 90 KAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539 KAV + +G +HF+ +GD + G++ L++G HGFH+H +GD C S G HFNP K HGGP+D RH GDLGN+ +G A ++IVD LI L G SIIGR++V+H+K DDLG+ GN S K GNAG ++ACGVIG+ Sbjct: 4 KAVCVLKGDGPVQGTIHFEAKGD-TVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAIVDIVD--PLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGI 150 The following BLAST results are available for this feature:
BLAST of CX288704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 142
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288704 ID=CX288704; Name=CX288704; organism=Citrus clementina; type=EST; length=589bpback to top |