CX288704

Overview
NameCX288704
Unique NameCX288704
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length589
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODE_ONCVO (Extracellular superoxide dismutase [Cu-Zn] OS=Onchocerca volvulus GN=sod-4 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.938e-34
Identity = 78/156 (50.00%), Postives = 100/156 (64.10%), Query Frame = 3
Query:   90 KAVAYVISKWGPKGILHFKQEGDGP-TTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGK-VGNY--HSKKNGNAGDKIACGVIGLQA 545
            +AVA +    G  GI++F+Q   G  TTI G++  L+ G HGFH+H YGD  + C S GDH+NPF K HGGP D I+H GDLGNI  G +G A++ I      I L GP S+IG S+V+H   DDLG+  GN    S K GNAG ++ACGVIG+ A
Sbjct:   46 RAVAVLRGDAGVSGIIYFQQGSGGSITTISGSVSGLTPGLHGFHVHQYGDQTNGCTSAGDHYNPFGKTHGGPNDRIKHIGDLGNIVAGANGVAEVYINSYD--IKLRGPLSVIGHSLVVHANTDDLGQGTGNMREESLKTGNAGSRLACGVIGIAA 199          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_CAPHI (Superoxide dismutase [Cu-Zn] OS=Capra hircus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 144.821 bits (364), Expect = 2.938e-34
Identity = 73/150 (48.67%), Postives = 97/150 (64.67%), Query Frame = 3
Query:   90 KAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            KAV  +      +G +HF+ +GD    + G++  L++G HGFH+H +GD    C S G HFNP  K HGGP+D  RH GDLGN+    +G A ++IVD   LI L G  SIIGR++V+H+K DDLG+ GN  S K GNAG  +ACGVIG+
Sbjct:    4 KAVCVLKGDGPVQGTIHFEAKGD-KVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVKADKNGVAIVDIVD--PLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSCLACGVIGI 150          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_SHEEP (Superoxide dismutase [Cu-Zn] OS=Ovis aries GN=SOD1 PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 8.549e-34
Identity = 72/150 (48.00%), Postives = 97/150 (64.67%), Query Frame = 3
Query:   90 KAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            KAV  +      +G + F+ +GD    + G++  L++G HGFH+H +GD    C S G HFNP  K HGGP+D  RH GDLGN+    +G A ++IVD   LI L G  SIIGR++V+H+K DDLG+ GN  S K GNAG ++ACGVIG+
Sbjct:    4 KAVCVLKGDGPVQGTIRFEAKGD-KVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVKADKNGVAIVDIVD--PLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGGRLACGVIGI 150          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_CERCA (Superoxide dismutase [Cu-Zn] OS=Ceratitis capitata GN=Sod PE=3 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 8.549e-34
Identity = 73/152 (48.03%), Postives = 94/152 (61.84%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQE-GDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            VKAV  +      KG +HF+Q+    P  + G +  L++G HGFH+H +GD  + C S G HFNP+   HG P D  RH GDLGNI    DG  K+ I D  KLI L G NSI+GR++V+H   DDLGK G+  SK  GNAG ++ CGVIG+
Sbjct:    3 VKAVCVI--NGDVKGTVHFEQQDAKSPVLVTGEVNGLAKGLHGFHVHEFGDNTNGCTSAGPHFNPYGNSHGAPSDLNRHLGDLGNIEASGDGATKVEISD--KLITLFGENSIVGRTIVVHADPDDLGKGGHELSKTTGNAGARLGCGVIGI 150          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_DROWI (Superoxide dismutase [Cu-Zn] OS=Drosophila willistoni GN=Sod PE=3 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.117e-33
Identity = 76/152 (50.00%), Postives = 94/152 (61.84%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGDG-PTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            VKAV  +      KG + F+QE +G P  + G +  L +G HGFH+H +GD  + C S+G HFNP  K+HG P D  RH GDLGNI     G   +NI D    I LVG NSIIGR+VV+H   DDLGK G+  SK  GNAG +I CGVIG+
Sbjct:    3 VKAVCVI--NGDAKGTVFFEQEDNGAPVKVTGEVTGLGKGLHGFHVHEFGDNTNGCMSSGPHFNPHSKEHGAPGDENRHLGDLGNIEASGSGPTAVNITDSK--ITLVGANSIIGRTVVVHADPDDLGKGGHELSKTTGNAGARIGCGVIGI 150          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_CEREL (Superoxide dismutase [Cu-Zn] OS=Cervus elaphus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 1.117e-33
Identity = 71/150 (47.33%), Postives = 98/150 (65.33%), Query Frame = 3
Query:   90 KAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            KAV  +      +G + F+ +G     + G++  L++G HGFH+H +GD    C S G HFNP  K HGGP+D  RH GDLGN+    +G AK++IVD   LI L G +SIIGR++V+H+K DDLG+ GN  S K GNA +++ACGVIG+
Sbjct:    4 KAVCVLKGDGPVQGTIRFEAKGH-TVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAKVDIVD--SLISLSGEHSIIGRTMVVHEKPDDLGRGGNEESTKTGNARNRLACGVIGI 150          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_ASHGO (Superoxide dismutase [Cu-Zn] OS=Ashbya gossypii GN=SOD1 PE=3 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 1.117e-33
Identity = 75/153 (49.02%), Postives = 96/153 (62.75%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGDGP-TTIKGTLYYLSQGA-HGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            VKAVA +    G  G++HF+QE D   TTI   +        HGFHIH +GD+ + C S+G HFNPF+K HG PED  RH GD+GN+    +G A  +   K  LI + GP SI+GR+VV+H   DDLG+ GN  S K GNAG + ACGVIG+
Sbjct:    2 VKAVAVLKGDAGVSGVVHFEQEADAAVTTISWNITGFEPNTEHGFHIHEFGDVTNGCTSSGSHFNPFKKTHGSPEDENRHVGDMGNVLADANGVAVGSA--KDPLIKIFGPTSILGRTVVVHAGKDDLGRGGNEESLKTGNAGPRPACGVIGI 152          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_DROSI (Superoxide dismutase [Cu-Zn] OS=Drosophila simulans GN=Sod PE=3 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 7.237e-33
Identity = 74/152 (48.68%), Postives = 95/152 (62.50%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGDG-PTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            VKAV  +      KG + F+QE  G P  + G +  L++G HGFH+H +GD  + C S+G HFNP+ K+HG P D  RH GDLGNI    D   K+NI D    I L G +SIIGR+VV+H   DDLG+ G+  SK  GNAG +I CGVIG+
Sbjct:    3 VKAVCVI--NGDAKGTVFFEQESSGTPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVNITDSK--ITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGCGVIGI 150          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_DROSE (Superoxide dismutase [Cu-Zn] OS=Drosophila sechellia GN=Sod PE=3 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 7.237e-33
Identity = 74/152 (48.68%), Postives = 95/152 (62.50%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGDG-PTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            VKAV  +      KG + F+QE  G P  + G +  L++G HGFH+H +GD  + C S+G HFNP+ K+HG P D  RH GDLGNI    D   K+NI D    I L G +SIIGR+VV+H   DDLG+ G+  SK  GNAG +I CGVIG+
Sbjct:    3 VKAVCVI--NGDAKGTVFFEQESSGTPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVNITDSK--ITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGCGVIGI 150          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_DROME (Superoxide dismutase [Cu-Zn] OS=Drosophila melanogaster GN=Sod PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 7.237e-33
Identity = 74/152 (48.68%), Postives = 95/152 (62.50%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGDG-PTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            VKAV  +      KG + F+QE  G P  + G +  L++G HGFH+H +GD  + C S+G HFNP+ K+HG P D  RH GDLGNI    D   K+NI D    I L G +SIIGR+VV+H   DDLG+ G+  SK  GNAG +I CGVIG+
Sbjct:    3 VKAVCVI--NGDAKGTVFFEQESSGTPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVNITDSK--ITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGCGVIGI 150          
The following BLAST results are available for this feature:
BLAST of CX288704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODE_ONCVO2.938e-3450.00Extracellular superoxide dismutase [Cu-Zn] OS=Onch... [more]
SODC_CAPHI2.938e-3448.67Superoxide dismutase [Cu-Zn] OS=Capra hircus GN=SO... [more]
SODC_SHEEP8.549e-3448.00Superoxide dismutase [Cu-Zn] OS=Ovis aries GN=SOD1... [more]
SODC_CERCA8.549e-3448.03Superoxide dismutase [Cu-Zn] OS=Ceratitis capitata... [more]
SODC_DROWI1.117e-3350.00Superoxide dismutase [Cu-Zn] OS=Drosophila willist... [more]
SODC_CEREL1.117e-3347.33Superoxide dismutase [Cu-Zn] OS=Cervus elaphus GN=... [more]
SODC_ASHGO1.117e-3349.02Superoxide dismutase [Cu-Zn] OS=Ashbya gossypii GN... [more]
SODC_DROSI7.237e-3348.68Superoxide dismutase [Cu-Zn] OS=Drosophila simulan... [more]
SODC_DROSE7.237e-3348.68Superoxide dismutase [Cu-Zn] OS=Drosophila sechell... [more]
SODC_DROME7.237e-3348.68Superoxide dismutase [Cu-Zn] OS=Drosophila melanog... [more]

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Properties
Property NameValue
Genbank descriptionC02003D12SK IF1 Citrus clementina cDNA clone C02003D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288704 ID=CX288704; Name=CX288704; organism=Citrus clementina; type=EST; length=589bp
AGAGAACGGCTTCAATCAAGTTGGTAGCCCTTTTAGCTGTTTTATTCTGT
TTTGTCAATGCAACCAAATCAAGAGGAGTCCCAACGGTGAAAGCAGTTGC
TTATGTTATTAGCAAATGGGGTCCCAAGGGAATTCTCCATTTTAAACAGG
AAGGAGATGGCCCAACAACTATAAAGGGGACACTCTATTACCTTTCGCAG
GGTGCTCACGGATTTCATATACACGTCTACGGGGACATGGCCCATTTCTG
CCAGTCAACTGGCGATCACTTTAACCCATTTCGCAAAGATCATGGTGGCC
CAGAGGATTGGATTCGTCACGCCGGTGATTTAGGAAATATCTATGTTGGT
TTTGATGGTAAAGCCAAGATCAACATTGTTGACAAGCATAAGCTGATTCC
TCTTGTTGGGCCAAATTCCATTATCGGAAGGTCTGTCGTGATACACGATA
AGCATGATGATCTTGGCAAGGTTGGAAATTACCACAGCAAAAAGAATGGA
AATGCTGGTGACAAAATAGCTTGTGGCGTCATTGGTCTCCAAGCATGAAT
GGTCTCGGTTTGGACTCTATATGATAAATACTTTACCTG
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