CX288704

Overview
NameCX288704
Unique NameCX288704
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length589
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_DROMA (Superoxide dismutase [Cu-Zn] OS=Drosophila mauritiana GN=Sod PE=3 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 7.237e-33
Identity = 74/152 (48.68%), Postives = 95/152 (62.50%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGDG-PTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            VKAV  +      KG + F+QE  G P  + G +  L++G HGFH+H +GD  + C S+G HFNP+ K+HG P D  RH GDLGNI    D   K+NI D    I L G +SIIGR+VV+H   DDLG+ G+  SK  GNAG +I CGVIG+
Sbjct:    3 VKAVCVI--NGDAKGTVFFEQESSGTPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVNITDSK--ITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGCGVIGI 150          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_CAEEL (Superoxide dismutase [Cu-Zn] OS=Caenorhabditis elegans GN=sod-1 PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 7.237e-33
Identity = 73/137 (53.28%), Postives = 90/137 (65.69%), Query Frame = 3
Query:  144 KQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGK-VGN--YHSKKNGNAGDKIACGVIGLQA 545
            K E D    I+G +  L+ G HGFH+H YGD  + C S G HFNPF K HGGP+  IRH GDLGN+  G DG AKI + D   L+ L GPN+++GRS+V+H   DDLG+ VG+    SKK GNAG + ACGVI L A
Sbjct:   45 KSEND-QAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTD--TLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGNAGARAACGVIALAA 178          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_CANGA (Superoxide dismutase [Cu-Zn] OS=Candida glabrata GN=SOD1 PE=3 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 1.612e-32
Identity = 77/153 (50.33%), Postives = 94/153 (61.44%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGD-GPTTIKGTLYYLSQGAH-GFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            VKAVA +    G  G++  +Q  +  PTTI   +      A  GFHIH +GD+ + C S G HFNPF+K HG P+D  RH GDLGNI     G AK  I D   L+ L+GP S++GRSVV+H   DDLGK GN  S K GNAG + ACGVIGL
Sbjct:    2 VKAVAVLRGSAGVSGVVTLEQASEQDPTTITYEIAGNDPNAERGFHIHEFGDVTNGCVSAGPHFNPFKKTHGAPQDENRHVGDLGNIKTDAQGVAKGVITD--SLVKLIGPTSVVGRSVVVHAGTDDLGKGGNEESLKTGNAGPRPACGVIGL 152          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_CHYAM (Superoxide dismutase [Cu-Zn] OS=Chymomyza amoena GN=Sod PE=3 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 2.106e-32
Identity = 72/150 (48.00%), Postives = 92/150 (61.33%), Query Frame = 3
Query:   93 AVAYVISKWGPKGILHFKQEGD-GPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            A A  +     KG ++F+QE    P  + G +  L++G HGFH+H +GD  + C S+G HFNP  K+HG P D  RH GDLGNI    DG  K+ I D    I L G NSI+GR+VV+H   DDLGK G+  SK  GNAG +I CGVIG+
Sbjct:    3 AKAVCVINGDAKGTVYFEQEDACAPVKVCGEITGLNKGQHGFHVHEFGDNTNGCMSSGPHFNPLNKEHGAPTDENRHLGDLGNIEAPGDGPTKVCINDSK--ITLFGENSIVGRTVVVHADPDDLGKGGHELSKSTGNAGARIGCGVIGI 150          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_CRYGA (Superoxide dismutase [Cu-Zn] OS=Cryptococcus gattii GN=SOD1 PE=2 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 2.750e-32
Identity = 74/153 (48.37%), Postives = 93/153 (60.78%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGDG-PTTIKGTLYYLSQGAH-GFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            VKAVA +       G++ F QE +G P T+ G +  L   A  GFH+H +GD  + C S G HFNP  K+HG P D  RH GDLGN+    +G A +NI DK   + L GP SIIGR++V+H   DD GK GN  S K GNAG + ACGVIG+
Sbjct:    2 VKAVAVLKGDSPVTGVITFTQEKEGAPVTVSGDIKNLDANAERGFHVHEFGDNTNGCTSAGPHFNPHGKNHGAPSDSERHVGDLGNVKTDGNGVASVNISDKS--LSLFGPYSIIGRTIVVHAGTDDFGKGGNAESLKTGNAGARAACGVIGI 152          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_CAEBR (Superoxide dismutase [Cu-Zn] OS=Caenorhabditis briggsae GN=sod-1 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.750e-32
Identity = 71/131 (54.20%), Postives = 86/131 (65.65%), Query Frame = 3
Query:  162 PTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGK-VGN--YHSKKNGNAGDKIACGVIGLQA 545
            P  I+G +  L+ G HGFH+H YGD  + C S G HFNPF K HGGP    RH GDLGN+  G DG AK++I D  KLI L G N++IGRS+V+H   DDLG+ VG+    S K GNAG + ACGVI L A
Sbjct:   50 PAVIEGEIKGLTPGLHGFHVHQYGDSTNGCLSAGPHFNPFGKTHGGPNSETRHVGDLGNVEAGADGVAKVHITD--KLITLYGANTVIGRSMVVHAGQDDLGQGVGDKAEESAKTGNAGARAACGVIALAA 178          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_DROOR (Superoxide dismutase [Cu-Zn] OS=Drosophila orena GN=Sod PE=3 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 3.592e-32
Identity = 73/152 (48.03%), Postives = 95/152 (62.50%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEG-DGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            VKAV  +      KG + F+QE  + P  + G +  L++G HGFH+H +GD  + C S+G HFNP+ K+HG P D  RH GDLGNI    D   K++I D    I L G +SIIGR+VV+H   DDLGK G+  SK  GNAG +I CGVIG+
Sbjct:    3 VKAVCVI--NGDAKGTVFFEQESSETPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVSITDSR--ITLFGADSIIGRTVVVHADADDLGKGGHELSKSTGNAGARIGCGVIGI 150          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_DROYA (Superoxide dismutase [Cu-Zn] OS=Drosophila yakuba GN=Sod PE=3 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 4.691e-32
Identity = 73/152 (48.03%), Postives = 95/152 (62.50%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEG-DGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            VKAV  +      KG + F+QE  + P  + G +  L++G HGFH+H +GD  + C S+G HFNP+ K+HG P D  RH GDLGNI    D   K++I D    I L G +SIIGR+VV+H   DDLGK G+  SK  GNAG +I CGVIG+
Sbjct:    3 VKAVCVI--NGDAKGTVFFEQESSETPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVSITDSK--ITLFGADSIIGRTVVVHADADDLGKGGHELSKSTGNAGARIGCGVIGI 150          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_YEAST (Superoxide dismutase [Cu-Zn] OS=Saccharomyces cerevisiae GN=SOD1 PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 8.002e-32
Identity = 74/153 (48.37%), Postives = 94/153 (61.44%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGDG-PTTIKGTLYYLSQGAH-GFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            V+AVA +    G  G++ F+Q  +  PTT+   +   S  A  GFHIH +GD  + C S G HFNPF+K HG P D +RH GD+GN+    +G AK +   K  LI L+GP S++GRSVVIH   DDLGK     S K GNAG + ACGVIGL
Sbjct:    2 VQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAGPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSF--KDSLIKLIGPTSVVGRSVVIHAGQDDLGKGDTEESLKTGNAGPRPACGVIGL 152          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_DROPS (Superoxide dismutase [Cu-Zn] OS=Drosophila pseudoobscura pseudoobscura GN=Sod PE=3 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 8.002e-32
Identity = 72/152 (47.37%), Postives = 93/152 (61.18%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQE-GDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            VKAV  +      KG + F+QE  + P  + G +  L++G HGFH+H +GD  + C S+G HFNP  K+HG P D  RH GDLGNI    D    ++I D    I L G +SIIGR+VV+H   DDLGK G+  SK  GNAG +I CGVIG+
Sbjct:    2 VKAVCVI--NGDAKGTVFFEQETSEAPVKVTGEVLGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSK--ITLFGADSIIGRTVVVHADADDLGKGGHELSKTTGNAGARIGCGVIGI 149          
The following BLAST results are available for this feature:
BLAST of CX288704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODC_DROMA7.237e-3348.68Superoxide dismutase [Cu-Zn] OS=Drosophila mauriti... [more]
SODC_CAEEL7.237e-3353.28Superoxide dismutase [Cu-Zn] OS=Caenorhabditis ele... [more]
SODC_CANGA1.612e-3250.33Superoxide dismutase [Cu-Zn] OS=Candida glabrata G... [more]
SODC_CHYAM2.106e-3248.00Superoxide dismutase [Cu-Zn] OS=Chymomyza amoena G... [more]
SODC_CRYGA2.750e-3248.37Superoxide dismutase [Cu-Zn] OS=Cryptococcus gatti... [more]
SODC_CAEBR2.750e-3254.20Superoxide dismutase [Cu-Zn] OS=Caenorhabditis bri... [more]
SODC_DROOR3.592e-3248.03Superoxide dismutase [Cu-Zn] OS=Drosophila orena G... [more]
SODC_DROYA4.691e-3248.03Superoxide dismutase [Cu-Zn] OS=Drosophila yakuba ... [more]
SODC_YEAST8.002e-3248.37Superoxide dismutase [Cu-Zn] OS=Saccharomyces cere... [more]
SODC_DROPS8.002e-3247.37Superoxide dismutase [Cu-Zn] OS=Drosophila pseudoo... [more]

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Properties
Property NameValue
Genbank descriptionC02003D12SK IF1 Citrus clementina cDNA clone C02003D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288704 ID=CX288704; Name=CX288704; organism=Citrus clementina; type=EST; length=589bp
AGAGAACGGCTTCAATCAAGTTGGTAGCCCTTTTAGCTGTTTTATTCTGT
TTTGTCAATGCAACCAAATCAAGAGGAGTCCCAACGGTGAAAGCAGTTGC
TTATGTTATTAGCAAATGGGGTCCCAAGGGAATTCTCCATTTTAAACAGG
AAGGAGATGGCCCAACAACTATAAAGGGGACACTCTATTACCTTTCGCAG
GGTGCTCACGGATTTCATATACACGTCTACGGGGACATGGCCCATTTCTG
CCAGTCAACTGGCGATCACTTTAACCCATTTCGCAAAGATCATGGTGGCC
CAGAGGATTGGATTCGTCACGCCGGTGATTTAGGAAATATCTATGTTGGT
TTTGATGGTAAAGCCAAGATCAACATTGTTGACAAGCATAAGCTGATTCC
TCTTGTTGGGCCAAATTCCATTATCGGAAGGTCTGTCGTGATACACGATA
AGCATGATGATCTTGGCAAGGTTGGAAATTACCACAGCAAAAAGAATGGA
AATGCTGGTGACAAAATAGCTTGTGGCGTCATTGGTCTCCAAGCATGAAT
GGTCTCGGTTTGGACTCTATATGATAAATACTTTACCTG
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