CX288704

Overview
NameCX288704
Unique NameCX288704
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length589
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_HAECO (Superoxide dismutase [Cu-Zn] OS=Haemonchus contortus GN=SOD PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.045e-31
Identity = 73/156 (46.79%), Postives = 95/156 (60.90%), Query Frame = 3
Query:   90 KAVAYVISKWGPKGILHFKQEGDG-PTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGK-VG--NYHSKKNGNAGDKIACGVIGLQA 545
            +AVA +    G  G + F Q+ +  P  IKG +  L+ G HGFH+H YGD  + C S G HFNPF K HGGP+D +RH GDLGN+  G DG A   I  K  L+ + G ++++GRS+V+H   DDLGK VG     S K GN G ++ACGVI   A
Sbjct:    4 RAVAVLRGDPGVTGTVWFSQDKESDPCVIKGEIKGLTPGLHGFHVHQYGDSTNGCTSAGPHFNPFNKTHGGPKDDVRHVGDLGNVEAGADGVAHFEI--KDHLVKIHGEHTVVGRSLVVHAGTDDLGKGVGEKKEESLKTGNRGARVACGVIATAA 157          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_BOMMO (Superoxide dismutase [Cu-Zn] OS=Bombyx mori PE=1 SV=3)

HSP 1 Score: 136.346 bits (342), Expect = 1.045e-31
Identity = 72/151 (47.68%), Postives = 94/151 (62.25%), Query Frame = 3
Query:   93 AVAYVISKWGPKGILHFKQEGD-GPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFD-GKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            A A  + +    G + F Q+ +  P  + G +  L++G HGFH+H +GD  + C S G HFNP ++DHGGP   +RH GDLGNI    D G  K++I D    I L GPNSIIGR++V+H   DDLG  G+  SK  GNAG +IACGVIGL
Sbjct:    3 AKAVCVLRGDVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQ--ISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVIGL 151          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_DROTE (Superoxide dismutase [Cu-Zn] OS=Drosophila teissieri GN=Sod PE=3 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 1.365e-31
Identity = 72/152 (47.37%), Postives = 95/152 (62.50%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEG-DGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            VKAV  +      KG + F+QE  + P  + G +  L++G HGFH+H +GD  + C S+G HFNP+ K+HG P D  RH GDLGNI    D   K++I D    I L G +SIIGR+VV+H   DDLG+ G+  SK  GNAG +I CGVIG+
Sbjct:    3 VKAVCVI--NGDAKGTVFFEQESSETPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVSITDSK--ITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGCGVIGI 150          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_KLULA (Superoxide dismutase [Cu-Zn] OS=Kluyveromyces lactis GN=SOD1 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.783e-31
Identity = 76/153 (49.67%), Postives = 93/153 (60.78%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEG-DGPTTIKGTLYYLSQGA-HGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            V AVA +       GI+ F+QE  D  T I   +      A  GFHIH +GD  + C S G HFNPF K+HG PED  RH GDLGNI     G +K ++ DKH  I L+GP SI+GR+VV+H   DDLGK G+  S K GNAG + ACGVIG+
Sbjct:    2 VNAVAVLKGDSSVSGIVRFEQESEDQQTKISWEITGNDANALRGFHIHTFGDNTNGCTSAGPHFNPFNKNHGAPEDEERHVGDLGNIPTDAQGISKGSLTDKH--IKLLGPLSIVGRTVVVHAGQDDLGKGGDAESLKTGNAGARHACGVIGI 152          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_DROBS (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila busckii GN=Sod PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.783e-31
Identity = 70/139 (50.36%), Postives = 89/139 (64.03%), Query Frame = 3
Query:  126 KGILHFKQEGDG-PTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            KG + F+QE +  P  + G +  L++G HGFH+H +GD  + C S+G HFNP  K+HG P D  RH GDLGNI    DG   ++I D    I L G NSIIGR+VV+H   DDLGK G+  SK  GNAG +I CGVIG+
Sbjct:    6 KGTVFFEQESEKCPVKVTGEVTGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPQGKEHGAPTDENRHLGDLGNITATGDGPTAVDICDCK--ITLFGANSIIGRTVVVHADPDDLGKGGHELSKTTGNAGARIGCGVIGI 142          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_YARLI (Superoxide dismutase [Cu-Zn] OS=Yarrowia lipolytica GN=SOD1 PE=3 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 2.328e-31
Identity = 76/155 (49.03%), Postives = 95/155 (61.29%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGD-GPTTIKGTLYYLSQGAH-GFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQA 545
            VKAVA +       G + F+Q+ + GP T+   +      A  GFH+H +GD  + C S G HFNPF+K+HGGP D  RH GDLGN+    +G AK   V K  L+ L G NSI+GR+VVIH   DDLGK G+  S K GNAG + ACGVIGL A
Sbjct:    2 VKAVAVLRGDSKVSGTVTFEQDSESGPVTVTYDIKGNDPNAERGFHVHEFGDNTNGCTSAGPHFNPFKKNHGGPTDSERHVGDLGNVKTDSEGVAK--GVLKDSLLKLTGDNSIVGRTVVIHGGEDDLGKGGHADSLKTGNAGPRPACGVIGLTA 154          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC1_DEBHA (Superoxide dismutase [Cu-Zn] 1 OS=Debaryomyces hansenii GN=SOD1 PE=1 SV=4)

HSP 1 Score: 135.191 bits (339), Expect = 2.328e-31
Identity = 75/152 (49.34%), Postives = 93/152 (61.18%), Query Frame = 3
Query:   90 KAVAYVISKWGPKGILHFKQEGDG-PTTIKGTLYYLSQGA-HGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            KAVA +       G+++F+Q  +  PTTI   +      A  GFH+H +GD  + C S G HFNPF K+HG PED  RH GDLGN+     G AK +  D    + L+G NSI+GR+VVIH   DDLGK GN  SKK GNAG + ACGVIGL
Sbjct:    3 KAVAVLRGDSKVSGVVNFEQSSESDPTTITWEISGNDANALRGFHVHTFGDNTNGCTSAGPHFNPFTKEHGAPEDDNRHVGDLGNVTTDTSGVAKGSKQD--LFVKLIGQNSILGRTVVIHAGTDDLGKGGNAESKKTGNAGARPACGVIGL 152          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODE_DIRIM (Extracellular superoxide dismutase [Cu-Zn] OS=Dirofilaria immitis PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.041e-31
Identity = 79/160 (49.38%), Postives = 98/160 (61.25%), Query Frame = 3
Query:   75 GVPTVKAVAYVISKWGPKGILHFKQEGDGP-TTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGN----YHSKKNGNAGDKIACGVIGL 539
            G+P  KAVA V+      GI++F+Q      TTI GT+  L+ G HGFHIH YG  A+ C S   H+NPF K HG P + I+H GDL NI  G DG A +NI+  H  I L GP S+IGRS+V+H   DDLGK GN      S K GNAG +I C +IG+
Sbjct:   37 GMPK-KAVA-VLKSDTVNGIIYFQQNNRASATTIYGTINGLTPGLHGFHIHQYGIKANGCTSAAAHYNPFEKTHGRPTNNIKHIGDLRNIKAGADGVANVNIISNH--IQLSGPLSVIGRSLVVHANPDDLGK-GNGDAREESLKTGNAGSRIVCSIIGI 191          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_CORMI (Superoxide dismutase [Cu-Zn] OS=Cordyceps militaris GN=SOD1 PE=2 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 6.774e-31
Identity = 73/153 (47.71%), Postives = 91/153 (59.48%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGDG-PTTIKGTLYYLSQGAH-GFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            VKAV  +       G + F+QE +  PTTI   +      A  GFHIH +GD  + C S G HFNP  K HG P D  RH GDLGNI     G AK ++ D H  + L+GP+S++GR+VV+H   DDLGK GN  S K GNAG + ACGVIG+
Sbjct:    2 VKAVCVLRGDAKVAGTVTFEQESESAPTTITWDITGNDPNAERGFHIHTFGDNTNGCTSAGPHFNPHGKTHGAPTDAARHVGDLGNIKTDGQGNAKGSVQDSH--VKLIGPHSVVGRTVVVHGGTDDLGKGGNEESLKTGNAGPRPACGVIGV 152          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_DROER (Superoxide dismutase [Cu-Zn] OS=Drosophila erecta GN=Sod PE=3 SV=3)

HSP 1 Score: 132.494 bits (332), Expect = 1.509e-30
Identity = 72/152 (47.37%), Postives = 93/152 (61.18%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEG-DGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 539
            VKAV  +      KG + F+QE  + P  + G +  L++  HGFH+H +GD  + C S+G HFNP  K+HG P D  RH GDLGNI    D   K++I D    I L G +SIIGR+VV+H   DDLGK G+  SK  GNAG +I CGVIG+
Sbjct:    3 VKAVCVI--NGDAKGTVFFEQESSETPVKVSGEVCGLAKCLHGFHVHEFGDNTNGCMSSGPHFNPHGKEHGAPVDENRHLGDLGNIEATGDCPTKVSITDSK--ITLFGADSIIGRTVVVHADADDLGKGGHELSKSTGNAGARIGCGVIGI 150          
The following BLAST results are available for this feature:
BLAST of CX288704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODC_HAECO1.045e-3146.79Superoxide dismutase [Cu-Zn] OS=Haemonchus contort... [more]
SODC_BOMMO1.045e-3147.68Superoxide dismutase [Cu-Zn] OS=Bombyx mori PE=1 S... [more]
SODC_DROTE1.365e-3147.37Superoxide dismutase [Cu-Zn] OS=Drosophila teissie... [more]
SODC_KLULA1.783e-3149.67Superoxide dismutase [Cu-Zn] OS=Kluyveromyces lact... [more]
SODC_DROBS1.783e-3150.36Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_YARLI2.328e-3149.03Superoxide dismutase [Cu-Zn] OS=Yarrowia lipolytic... [more]
SODC1_DEBHA2.328e-3149.34Superoxide dismutase [Cu-Zn] 1 OS=Debaryomyces han... [more]
SODE_DIRIM3.041e-3149.38Extracellular superoxide dismutase [Cu-Zn] OS=Diro... [more]
SODC_CORMI6.774e-3147.71Superoxide dismutase [Cu-Zn] OS=Cordyceps militari... [more]
SODC_DROER1.509e-3047.37Superoxide dismutase [Cu-Zn] OS=Drosophila erecta ... [more]

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Properties
Property NameValue
Genbank descriptionC02003D12SK IF1 Citrus clementina cDNA clone C02003D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288704 ID=CX288704; Name=CX288704; organism=Citrus clementina; type=EST; length=589bp
AGAGAACGGCTTCAATCAAGTTGGTAGCCCTTTTAGCTGTTTTATTCTGT
TTTGTCAATGCAACCAAATCAAGAGGAGTCCCAACGGTGAAAGCAGTTGC
TTATGTTATTAGCAAATGGGGTCCCAAGGGAATTCTCCATTTTAAACAGG
AAGGAGATGGCCCAACAACTATAAAGGGGACACTCTATTACCTTTCGCAG
GGTGCTCACGGATTTCATATACACGTCTACGGGGACATGGCCCATTTCTG
CCAGTCAACTGGCGATCACTTTAACCCATTTCGCAAAGATCATGGTGGCC
CAGAGGATTGGATTCGTCACGCCGGTGATTTAGGAAATATCTATGTTGGT
TTTGATGGTAAAGCCAAGATCAACATTGTTGACAAGCATAAGCTGATTCC
TCTTGTTGGGCCAAATTCCATTATCGGAAGGTCTGTCGTGATACACGATA
AGCATGATGATCTTGGCAAGGTTGGAAATTACCACAGCAAAAAGAATGGA
AATGCTGGTGACAAAATAGCTTGTGGCGTCATTGGTCTCCAAGCATGAAT
GGTCTCGGTTTGGACTCTATATGATAAATACTTTACCTG
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