CX288714

Overview
NameCX288714
Unique NameCX288714
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length494
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288714 vs. ExPASy Swiss-Prot
Match: RL13_CAEEL (60S ribosomal protein L13 OS=Caenorhabditis elegans GN=rpl-13 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 2.419e-40
Identity = 81/142 (57.04%), Postives = 103/142 (72.54%), Query Frame = 1
Query:   67 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRXNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATA 492
            N ++ N HF+KHW   +KTWF+QPARK RR+  RQ KAV+I PRP AG LR VV     +YN K R GRGF+L+ELKAAGI +  A TIG++VD RR N++ EGL++N  RLK YKAKL++FP++A   K GDS+ EEL  A
Sbjct:    6 NQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKTRLGRGFSLQELKAAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAKLILFPKKASAPKKGDSSAEELKVA 147          
BLAST of CX288714 vs. ExPASy Swiss-Prot
Match: RL13_LUMRU (60S ribosomal protein L13 OS=Lumbricus rubellus GN=RPL13 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 4.721e-36
Identity = 76/122 (62.30%), Postives = 93/122 (76.23%), Query Frame = 1
Query:  127 FNQPARKNRRQVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRXNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATA 492
            FNQPARK RR+VAR+KKA+ I PRP AG LRP V  QT KYN +LR GRGF+L+ELKAAGI KK A  IG+SVD RR N+S+E LQ NVQRLK Y++KL++FP++  K   GD+  EE+  A
Sbjct:    2 FNQPARKERRRVARRKKALAIAPRPAAGSLRPQVRCQTFKYNTRLREGRGFSLDELKAAGINKKEARAIGISVDVRRRNKSVESLQLNVQRLKEYRSKLILFPKKLSKPNKGDATEEEMKLA 123          
BLAST of CX288714 vs. ExPASy Swiss-Prot
Match: RL13_CANAL (60S ribosomal protein L13 OS=Candida albicans GN=RPL13 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 5.401e-32
Identity = 68/122 (55.74%), Postives = 86/122 (70.49%), Query Frame = 1
Query:   82 NGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRXNRSLEGLQSNVQRLKTYKAKLVVFPRRAR 447
            N HF+KHWQ  V+  F+Q  +K  R+ +R +KA KI PRP    LRPVV   T+KYN K+RAGRGFTL ELKA GI  K A TIG+SVDHRR N+S E   +NV RL+ YK+KLV+F ++ +
Sbjct:   11 NNHFRKHWQERVRVHFDQAGKKASRRQSRLRKAAKIAPRPIDA-LRPVVRAPTVKYNRKVRAGRGFTLAELKAVGIAPKYARTIGISVDHRRQNKSQETFDANVARLQEYKSKLVIFDKKTK 131          
BLAST of CX288714 vs. ExPASy Swiss-Prot
Match: RL13A_YEAST (60S ribosomal protein L13-A OS=Saccharomyces cerevisiae GN=RPL13A PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.681e-31
Identity = 69/127 (54.33%), Postives = 87/127 (68.50%), Query Frame = 1
Query:   67 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRXNRSLEGLQSNVQRLKTYKAKLVVFPRRAR 447
            N  I   HF+KHWQ  VK  F+Q  +K  R+ AR  +A KI PRP    LRPVV   T+KYN K+RAGRGFTL E+KAAG+    A TIG++VDHRR NR+ E   +NVQRLK Y++K++VFPR  +
Sbjct:    6 NLPILKNHFRKHWQERVKVHFDQAGKKVSRRNARATRAAKIAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRNGK 131          
BLAST of CX288714 vs. ExPASy Swiss-Prot
Match: RL13_SACEX (60S ribosomal protein L13 OS=Saccharomyces exiguus GN=RPL13 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 4.572e-31
Identity = 67/120 (55.83%), Postives = 84/120 (70.00%), Query Frame = 1
Query:   88 HFKKHWQNYVKTWFNQPARKNRRQVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRXNRSLEGLQSNVQRLKTYKAKLVVFPRRAR 447
            HF+KHWQ  VK  FNQ  +K  R+ AR  KA KI PRP    LRPVV   T+KYN K+RAGRGFT  E+KAAG+    A TIG++VDHRR N++ E  + NVQRLK Y++K++VFPR  +
Sbjct:   13 HFRKHWQERVKVHFNQAGKKASRRDARVAKAAKIAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTFGEVKAAGLTPAYARTIGIAVDHRRQNKNQEMFELNVQRLKEYQSKIIVFPRNGK 131          
BLAST of CX288714 vs. ExPASy Swiss-Prot
Match: RL13B_YEAST (60S ribosomal protein L13-B OS=Saccharomyces cerevisiae GN=RPL13B PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 4.572e-31
Identity = 69/124 (55.65%), Postives = 86/124 (69.35%), Query Frame = 1
Query:   67 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRXNRSLEGLQSNVQRLKTYKAKLVVFPR 438
            N  I   HF+KHWQ  VK  F+Q  +K  R+ AR  +A KI PRP    LRPVV   T+KYN K+RAGRGFTL E+KAAG+    A TIG++VDHRR NR+ E   +NVQRLK Y++K++VFPR
Sbjct:    6 NLPILKNHFRKHWQERVKVHFDQAGKKVSRRNARAARAAKIAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPR 128          
The following BLAST results are available for this feature:
BLAST of CX288714 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL13_CAEEL2.419e-4057.0460S ribosomal protein L13 OS=Caenorhabditis elegan... [more]
RL13_LUMRU4.721e-3662.3060S ribosomal protein L13 OS=Lumbricus rubellus GN... [more]
RL13_CANAL5.401e-3255.7460S ribosomal protein L13 OS=Candida albicans GN=R... [more]
RL13A_YEAST2.681e-3154.3360S ribosomal protein L13-A OS=Saccharomyces cerev... [more]
RL13_SACEX4.572e-3155.8360S ribosomal protein L13 OS=Saccharomyces exiguus... [more]
RL13B_YEAST4.572e-3155.6560S ribosomal protein L13-B OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionC02003E11SK IF1 Citrus clementina cDNA clone C02003E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288714 ID=CX288714; Name=CX288714; organism=Citrus clementina; type=EST; length=494bp
GCCGTCGAGACTGAGAGAAACGGACATAGTCGTCTGCATTTCGCTCTGTA
AACAGAAATGAAGCATAACAACGTAATTCCAAATGGGCACTTTAAGAAGC
ATTGGCAGAACTATGTCAAGACTTGGTTCAACCAACCTGCTCGCAAAAAT
CGACGACAAGTCGCTCGTCAAAAGAAGGCCGTTAAAATCTTCCCTCGCCC
TACTGCTGGGCCGCTTCGTCCCGTCGTTCATGGCCAGACTTTGAAATACA
ACATGAAATTAAGGGCTGGCAGAGGCTTTACTCTTGAGGAACTCAAGGCT
GCTGGAATTCCCAAGAAACTGGCTCCGACAATTGGTGTTTCAGTCGATCA
TCGACGCANGAACCGTTCTCTTGAGGGTCTTCAATCTAATGTTCAGAGGC
TCAAGACTTACAAGGCTAAGTTGGTTGTTTTCCCAAGACGTGCTCGCAAG
TTCAAGGCTGGTGATTCTGCCCCTGAGGAATTGGCAACAGCAAC
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