CX288714
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288714 vs. ExPASy Swiss-Prot
Match: RL13_CAEEL (60S ribosomal protein L13 OS=Caenorhabditis elegans GN=rpl-13 PE=2 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 2.419e-40 Identity = 81/142 (57.04%), Postives = 103/142 (72.54%), Query Frame = 1 Query: 67 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRXNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATA 492 N ++ N HF+KHW +KTWF+QPARK RR+ RQ KAV+I PRP AG LR VV +YN K R GRGF+L+ELKAAGI + A TIG++VD RR N++ EGL++N RLK YKAKL++FP++A K GDS+ EEL A Sbjct: 6 NQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKTRLGRGFSLQELKAAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAKLILFPKKASAPKKGDSSAEELKVA 147
BLAST of CX288714 vs. ExPASy Swiss-Prot
Match: RL13_LUMRU (60S ribosomal protein L13 OS=Lumbricus rubellus GN=RPL13 PE=2 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 4.721e-36 Identity = 76/122 (62.30%), Postives = 93/122 (76.23%), Query Frame = 1 Query: 127 FNQPARKNRRQVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRXNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATA 492 FNQPARK RR+VAR+KKA+ I PRP AG LRP V QT KYN +LR GRGF+L+ELKAAGI KK A IG+SVD RR N+S+E LQ NVQRLK Y++KL++FP++ K GD+ EE+ A Sbjct: 2 FNQPARKERRRVARRKKALAIAPRPAAGSLRPQVRCQTFKYNTRLREGRGFSLDELKAAGINKKEARAIGISVDVRRRNKSVESLQLNVQRLKEYRSKLILFPKKLSKPNKGDATEEEMKLA 123
BLAST of CX288714 vs. ExPASy Swiss-Prot
Match: RL13_CANAL (60S ribosomal protein L13 OS=Candida albicans GN=RPL13 PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 5.401e-32 Identity = 68/122 (55.74%), Postives = 86/122 (70.49%), Query Frame = 1 Query: 82 NGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRXNRSLEGLQSNVQRLKTYKAKLVVFPRRAR 447 N HF+KHWQ V+ F+Q +K R+ +R +KA KI PRP LRPVV T+KYN K+RAGRGFTL ELKA GI K A TIG+SVDHRR N+S E +NV RL+ YK+KLV+F ++ + Sbjct: 11 NNHFRKHWQERVRVHFDQAGKKASRRQSRLRKAAKIAPRPIDA-LRPVVRAPTVKYNRKVRAGRGFTLAELKAVGIAPKYARTIGISVDHRRQNKSQETFDANVARLQEYKSKLVIFDKKTK 131
BLAST of CX288714 vs. ExPASy Swiss-Prot
Match: RL13A_YEAST (60S ribosomal protein L13-A OS=Saccharomyces cerevisiae GN=RPL13A PE=1 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 2.681e-31 Identity = 69/127 (54.33%), Postives = 87/127 (68.50%), Query Frame = 1 Query: 67 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRXNRSLEGLQSNVQRLKTYKAKLVVFPRRAR 447 N I HF+KHWQ VK F+Q +K R+ AR +A KI PRP LRPVV T+KYN K+RAGRGFTL E+KAAG+ A TIG++VDHRR NR+ E +NVQRLK Y++K++VFPR + Sbjct: 6 NLPILKNHFRKHWQERVKVHFDQAGKKVSRRNARATRAAKIAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRNGK 131
BLAST of CX288714 vs. ExPASy Swiss-Prot
Match: RL13_SACEX (60S ribosomal protein L13 OS=Saccharomyces exiguus GN=RPL13 PE=3 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 4.572e-31 Identity = 67/120 (55.83%), Postives = 84/120 (70.00%), Query Frame = 1 Query: 88 HFKKHWQNYVKTWFNQPARKNRRQVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRXNRSLEGLQSNVQRLKTYKAKLVVFPRRAR 447 HF+KHWQ VK FNQ +K R+ AR KA KI PRP LRPVV T+KYN K+RAGRGFT E+KAAG+ A TIG++VDHRR N++ E + NVQRLK Y++K++VFPR + Sbjct: 13 HFRKHWQERVKVHFNQAGKKASRRDARVAKAAKIAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTFGEVKAAGLTPAYARTIGIAVDHRRQNKNQEMFELNVQRLKEYQSKIIVFPRNGK 131
BLAST of CX288714 vs. ExPASy Swiss-Prot
Match: RL13B_YEAST (60S ribosomal protein L13-B OS=Saccharomyces cerevisiae GN=RPL13B PE=1 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 4.572e-31 Identity = 69/124 (55.65%), Postives = 86/124 (69.35%), Query Frame = 1 Query: 67 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRXNRSLEGLQSNVQRLKTYKAKLVVFPR 438 N I HF+KHWQ VK F+Q +K R+ AR +A KI PRP LRPVV T+KYN K+RAGRGFTL E+KAAG+ A TIG++VDHRR NR+ E +NVQRLK Y++K++VFPR Sbjct: 6 NLPILKNHFRKHWQERVKVHFDQAGKKVSRRNARAARAAKIAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPR 128 The following BLAST results are available for this feature:
BLAST of CX288714 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 26
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288714 ID=CX288714; Name=CX288714; organism=Citrus clementina; type=EST; length=494bpback to top |