CX288720

Overview
NameCX288720
Unique NameCX288720
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length561
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15313 contig Ccv1_Contig15313:373..933. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288720 vs. ExPASy Swiss-Prot
Match: HSP82_TOBAC (Heat shock protein 82 (Fragment) OS=Nicotiana tabacum GN=HSP82 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 1.778e-54
Identity = 112/169 (66.27%), Postives = 123/169 (72.78%), Query Frame = 3
Query:   18 KETLKEKFEGLCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELXKRADADKNDKSVKDXXXXXXXXXXXTSGFSLDDPNTFGNRIHRMLKLGLSI-EEDAGDADADMPPLEDAADDAEGSKMEEVD 521
            KE  K+ FE LCK+IKD+LG               PCCLVTGEYGWTANMERIMKAQALRD+SM+ YMSSKKTMEINP+N IMEEL KRA+ADKNDKSVKD           TSGFSLDDPNTF  RIHRMLKLGLSI EE+    DADMP LE+  ++   SKMEEVD
Sbjct:  334 KEEKKKSFENLCKIIKDILGDKVEKVVVSDRIVDSPCCLVTGEYGWTANMERIMKAQALRDSSMSSYMSSKKTMEINPDNGIMEELRKRAEADKNDKSVKDLVLLLFETALLTSGFSLDDPNTFAARIHRMLKLGLSIDEEEEAVEDADMPALEETGEE---SKMEEVD 499          
BLAST of CX288720 vs. ExPASy Swiss-Prot
Match: HSP90_PLAFP (Heat shock 90 kDa protein homolog (Fragment) OS=Plasmodium falciparum (isolate Palo Alto / Uganda) PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 2.574e-45
Identity = 96/167 (57.49%), Postives = 115/167 (68.86%), Query Frame = 3
Query:   21 ETLKEKFEGLCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELXKRADADKNDKSVKDXXXXXXXXXXXTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAGDADADMPPLEDAADDAEGSKMEEVD 521
            ETLK ++EGLCKVIKDVL                PC LVT E+GW+ANMERIMKAQALRDNSM  YM SKK MEIN  +PI+  L ++ADADK+DK+VK            TSGF+L++P TF  RIHRM+KLGLSI+E+  + D D+PPLE+   DA  SKMEEVD
Sbjct:   29 ETLKAEYEGLCKVIKDVLHKKVEKVVVGQRITDSPCVLVTSEFGWSANMERIMKAQALRDNSMTSYMLSKKIMEINARHPIISALKQKADADKSDKTVKYLIWLLFDTSLLTSGFALEEPTTFSKRIHRMIKLGLSIDEEENN-DIDLPPLEETV-DATDSKMEEVD 193          
BLAST of CX288720 vs. ExPASy Swiss-Prot
Match: HS90B_DANRE (Heat shock protein HSP 90-beta OS=Danio rerio GN=hsp90ab1 PE=2 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 1.081e-43
Identity = 92/173 (53.18%), Postives = 113/173 (65.32%), Query Frame = 3
Query:   30 KEKFEGLCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELXKRADADKNDKSVKDXXXXXXXXXXXTSGFSLDDPNTFGNRIHRMLKLGLSIEED---------AGDADADMPPLEDAADDAEGSKMEEVD 521
            K KFE LCK++K++L                PCC+VT  YGWTANMERIMKAQALRDNS  GYM +KK +EINP++PIME L ++A+ADKNDK+VKD           +SGFSLDDP T  NRI+RM+KLGL I+ED         +  A  D+PPLE    D + S+MEEVD
Sbjct:  556 KAKFENLCKLMKEILDKKVEKVTVSNRLVSSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMMAKKHLEINPDHPIMETLRQKAEADKNDKAVKDLVILLFETALLSSGFSLDDPQTHSNRIYRMIKLGLGIDEDEDVPVEEPSSAAAPEDIPPLE---GDDDASRMEEVD 725          
BLAST of CX288720 vs. ExPASy Swiss-Prot
Match: HS90A_PIG (Heat shock protein HSP 90-alpha OS=Sus scrofa GN=HSP90AA1 PE=2 SV=3)

HSP 1 Score: 176.022 bits (445), Expect = 1.081e-43
Identity = 93/175 (53.14%), Postives = 115/175 (65.71%), Query Frame = 3
Query:   18 KETLKEKFEGLCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELXKRADADKNDKSVKDXXXXXXXXXXXTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAGDAD-------ADMPPLEDAADDAEGSKMEEVD 521
            +E  K KFE LCK++KD+L                PCC+VT  YGWTANMERIMKAQALRDNS  GYM++KK +EINP++ I+E L ++A+ADKNDKSVKD           +SGFSL+DP T  NRI+RM+KLGL I+ED   AD        +MPPLE    D + S+MEEVD
Sbjct:  562 QEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTADDSSAAVTEEMPPLE---GDDDTSRMEEVD 733          
BLAST of CX288720 vs. ExPASy Swiss-Prot
Match: HS90A_PANTR (Heat shock protein HSP 90-alpha OS=Pan troglodytes GN=HSP90AA1 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.081e-43
Identity = 93/175 (53.14%), Postives = 115/175 (65.71%), Query Frame = 3
Query:   18 KETLKEKFEGLCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELXKRADADKNDKSVKDXXXXXXXXXXXTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAGDAD-------ADMPPLEDAADDAEGSKMEEVD 521
            +E  K KFE LCK++KD+L                PCC+VT  YGWTANMERIMKAQALRDNS  GYM++KK +EINP++ I+E L ++A+ADKNDKSVKD           +SGFSL+DP T  NRI+RM+KLGL I+ED   AD        +MPPLE    D + S+MEEVD
Sbjct:  562 QEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTADDTSAAVTEEMPPLE---GDDDTSRMEEVD 733          
BLAST of CX288720 vs. ExPASy Swiss-Prot
Match: HS90A_MACFA (Heat shock protein HSP 90-alpha OS=Macaca fascicularis GN=HSP90AA1 PE=2 SV=3)

HSP 1 Score: 176.022 bits (445), Expect = 1.081e-43
Identity = 93/175 (53.14%), Postives = 115/175 (65.71%), Query Frame = 3
Query:   18 KETLKEKFEGLCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELXKRADADKNDKSVKDXXXXXXXXXXXTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAGDAD-------ADMPPLEDAADDAEGSKMEEVD 521
            +E  K KFE LCK++KD+L                PCC+VT  YGWTANMERIMKAQALRDNS  GYM++KK +EINP++ I+E L ++A+ADKNDKSVKD           +SGFSL+DP T  NRI+RM+KLGL I+ED   AD        +MPPLE    D + S+MEEVD
Sbjct:  562 QEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTADDTSAAVTEEMPPLE---GDDDTSRMEEVD 733          
BLAST of CX288720 vs. ExPASy Swiss-Prot
Match: HS90A_HUMAN (Heat shock protein HSP 90-alpha OS=Homo sapiens GN=HSP90AA1 PE=1 SV=5)

HSP 1 Score: 176.022 bits (445), Expect = 1.081e-43
Identity = 93/175 (53.14%), Postives = 115/175 (65.71%), Query Frame = 3
Query:   18 KETLKEKFEGLCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELXKRADADKNDKSVKDXXXXXXXXXXXTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAGDAD-------ADMPPLEDAADDAEGSKMEEVD 521
            +E  K KFE LCK++KD+L                PCC+VT  YGWTANMERIMKAQALRDNS  GYM++KK +EINP++ I+E L ++A+ADKNDKSVKD           +SGFSL+DP T  NRI+RM+KLGL I+ED   AD        +MPPLE    D + S+MEEVD
Sbjct:  561 QEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTADDTSAAVTEEMPPLE---GDDDTSRMEEVD 732          
BLAST of CX288720 vs. ExPASy Swiss-Prot
Match: HS90A_BOVIN (Heat shock protein HSP 90-alpha OS=Bos taurus GN=HSP90AA1 PE=2 SV=3)

HSP 1 Score: 176.022 bits (445), Expect = 1.081e-43
Identity = 93/175 (53.14%), Postives = 115/175 (65.71%), Query Frame = 3
Query:   18 KETLKEKFEGLCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELXKRADADKNDKSVKDXXXXXXXXXXXTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAGDAD-------ADMPPLEDAADDAEGSKMEEVD 521
            +E  K KFE LCK++KD+L                PCC+VT  YGWTANMERIMKAQALRDNS  GYM++KK +EINP++ I+E L ++A+ADKNDKSVKD           +SGFSL+DP T  NRI+RM+KLGL I+ED   AD        +MPPLE    D + S+MEEVD
Sbjct:  562 QEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTADDSSAAVTEEMPPLE---GDDDTSRMEEVD 733          
BLAST of CX288720 vs. ExPASy Swiss-Prot
Match: HS90A_RAT (Heat shock protein HSP 90-alpha OS=Rattus norvegicus GN=Hsp90aa1 PE=1 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 3.146e-43
Identity = 92/175 (52.57%), Postives = 114/175 (65.14%), Query Frame = 3
Query:   18 KETLKEKFEGLCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELXKRADADKNDKSVKDXXXXXXXXXXXTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAGDAD-------ADMPPLEDAADDAEGSKMEEVD 521
            +E  K KFE LCK++KD+L                PCC+VT  YGWTANMERIMKAQALRDNS  GYM++KK +EINP++ I+E L ++A+ADKNDKSVKD           +SGFSL+DP T  NRI+RM+KLGL I+ED    D        +MPPLE    D + S+MEEVD
Sbjct:  562 QEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTVDDTSAAVTEEMPPLE---GDDDTSRMEEVD 733          
BLAST of CX288720 vs. ExPASy Swiss-Prot
Match: HS90A_MOUSE (Heat shock protein HSP 90-alpha OS=Mus musculus GN=Hsp90aa1 PE=1 SV=4)

HSP 1 Score: 174.481 bits (441), Expect = 3.146e-43
Identity = 92/175 (52.57%), Postives = 114/175 (65.14%), Query Frame = 3
Query:   18 KETLKEKFEGLCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELXKRADADKNDKSVKDXXXXXXXXXXXTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAGDAD-------ADMPPLEDAADDAEGSKMEEVD 521
            +E  K KFE LCK++KD+L                PCC+VT  YGWTANMERIMKAQALRDNS  GYM++KK +EINP++ I+E L ++A+ADKNDKSVKD           +SGFSL+DP T  NRI+RM+KLGL I+ED    D        +MPPLE    D + S+MEEVD
Sbjct:  562 QEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTVDDTSAAVTEEMPPLE---GDDDTSRMEEVD 733          
The following BLAST results are available for this feature:
BLAST of CX288720 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
HSP82_TOBAC1.778e-5466.27Heat shock protein 82 (Fragment) OS=Nicotiana taba... [more]
HSP90_PLAFP2.574e-4557.49Heat shock 90 kDa protein homolog (Fragment) OS=Pl... [more]
HS90B_DANRE1.081e-4353.18Heat shock protein HSP 90-beta OS=Danio rerio GN=h... [more]
HS90A_PIG1.081e-4353.14Heat shock protein HSP 90-alpha OS=Sus scrofa GN=H... [more]
HS90A_PANTR1.081e-4353.14Heat shock protein HSP 90-alpha OS=Pan troglodytes... [more]
HS90A_MACFA1.081e-4353.14Heat shock protein HSP 90-alpha OS=Macaca fascicul... [more]
HS90A_HUMAN1.081e-4353.14Heat shock protein HSP 90-alpha OS=Homo sapiens GN... [more]
HS90A_BOVIN1.081e-4353.14Heat shock protein HSP 90-alpha OS=Bos taurus GN=H... [more]
HS90A_RAT3.146e-4352.57Heat shock protein HSP 90-alpha OS=Rattus norvegic... [more]
HS90A_MOUSE3.146e-4352.57Heat shock protein HSP 90-alpha OS=Mus musculus GN... [more]

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Properties
Property NameValue
Genbank descriptionC02003F05SK IF1 Citrus clementina cDNA clone C02003F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288720 ID=CX288720; Name=CX288720; organism=Citrus clementina; type=EST; length=561bp
ATTCGGCACGAGGGATGAAGGAAACCTTGAAGGAGAAATTTGAGGGTCTC
TGCAAGGTGATCAAGGATGTTTTGGGTGACAAGGTCGAGAAGGTTGTGGT
GTCTGACCGTGTTGTTGACTCACCCTGCTGTTTGGTGACTGGTGAGTATG
GATGGACAGCCAACATGGAGAGGATCATGAAGGCTCAGGCCTTGAGAGAC
AACAGCATGGCTGGTTACATGTCCAGCAAGAAGACCATGGAGATCAATCC
GGAGAACCCCATCATGGAGGAGCTCANGAAGAGGGCTGATGCGGACAAGA
ATGACAAGTCTGTGAAGGACCTTGTCCTTCTGCTCTTTGAGACTGCTCTC
CTCACTTCTGGTTTCAGCCTTGATGACCCTAACACTTTCGGCAACAGAAT
CCACAGGATGTTGAAACTCGGGCTGAGCATCGAGGAGGATGCTGGTGATG
CTGATGCTGACATGCCACCATTGGAGGATGCTGCTGACGATGCTGAGGGC
AGCAAGATGGAGGAAGTTGATTAAGAAGCTATAATAGTCTGATATACTAG
TCTTTTTTTCA
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