CX288720

Overview
NameCX288720
Unique NameCX288720
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length561
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15313 contig Ccv1_Contig15313:373..933. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288720 vs. ExPASy Swiss-Prot
Match: ENPL_RABIT (Endoplasmin (Fragment) OS=Oryctolagus cuniculus GN=HSP90B1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.865e-20
Identity = 58/170 (34.12%), Postives = 89/170 (52.35%), Query Frame = 3
Query:   18 KETLKEKFEGLCKVIKD-VLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNS-MAGYMSSKKTMEINPENPIMEELXKRADADKNDKSVKDXXXXXXXXXXXTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAGDADADMPPLEDAADDAEGSKMEEVD 521
            +E  +++FE L   +KD  L                PC LV  +YGW+ANMERIMKAQA +       Y +S+KT EINP +P++ ++ +     ++DK+V D            SG+ L D   +G+RI R+++L L+I+ DA   +      ED  +D E  + EE+D
Sbjct:  527 REATEKEFEPLLNWMKDKALKDKIEKAVVSQRLTESPCALVASQYGWSANMERIMKAQAYQTGKDSTKYYASQKTFEINPRHPLIRDMLR---IKEDDKTVMDLAVVLFETAILRSGYLLPDTKAYGDRIERIVRLSLNIDPDAKVEEEPEEEPEDTTEDTEQDEEEEMD 693          
BLAST of CX288720 vs. ExPASy Swiss-Prot
Match: ENPL_HORVU (Endoplasmin homolog OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.857e-19
Identity = 49/139 (35.25%), Postives = 78/139 (56.12%), Query Frame = 3
Query:  123 PCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELXKRADADKNDKSVKDXXXXXXXXXXXTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAG---DADADMPPLED---AADDAEGSKMEEVD 521
            PC +VT +YGW++NME+IM+AQ L D S   YM  K+ +EINP +PI++EL  +   D + + +K             SGF+L DP  F + I+R ++  L +  DA    + + + P +E+   A  +AE  + E+ D
Sbjct:  667 PCVVVTSKYGWSSNMEKIMQAQTLSDASKQAYMRGKRVLEINPRHPIIKELRDKVAQDSDSEGLKQTARLVYQTALMESGFNLPDPKDFASSIYRSVQKSLDLSPDAAVEEEEEVEEPEVEEKESAKQEAEEPEHEQYD 805          
BLAST of CX288720 vs. ExPASy Swiss-Prot
Match: ENPL_DICDI (Endoplasmin homolog OS=Dictyostelium discoideum GN=grp94 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 8.357e-12
Identity = 41/130 (31.54%), Postives = 69/130 (53.08%), Query Frame = 3
Query:   33 EKFEGLCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELXKRA-DADKNDKSVKDXXXXXXXXXXXTSGFSLDDPNTFGNRIHRMLKL 419
            E+F+ L   +K  L                P  LV+  +G TAN ERIMKAQA + N+   + +SKK MEINP +P++++L  R  +  + D++ K            T+G+S+D+P  F + I++++ +
Sbjct:  594 EEFKPLLSYLKKTLSDKLEKVVISKVLADSPSILVSNSWGVTANQERIMKAQAHQANAQPQF-NSKKIMEINPSHPLIKKLLNRLNEFGEEDETTKVSAHVLYETSALTAGYSIDNPTNFADFIYKLMMI 722          
BLAST of CX288720 vs. ExPASy Swiss-Prot
Match: ENPLL_HUMAN (Putative endoplasmin-like protein OS=Homo sapiens GN=HSP90B2P PE=5 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.074e-11
Identity = 32/68 (47.06%), Postives = 45/68 (66.18%), Query Frame = 3
Query:  126 CCLVTGEYGWTANMERIMKAQALRDN---SMAGYMSSKKTMEINPENPIMEELXKRADADKNDKSVKD 320
            C LV  +YGW+ NMERIMKAQA +     S   + S KKT EINP +P++ ++ +R   D++DK+V D
Sbjct:  284 CALVASQYGWSGNMERIMKAQAYQTGKGISTNYHASRKKTFEINPRHPLIRDMLRRIKEDEDDKTVLD 351          
The following BLAST results are available for this feature:
BLAST of CX288720 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
ENPL_RABIT2.865e-2034.12Endoplasmin (Fragment) OS=Oryctolagus cuniculus GN... [more]
ENPL_HORVU1.857e-1935.25Endoplasmin homolog OS=Hordeum vulgare PE=2 SV=1[more]
ENPL_DICDI8.357e-1231.54Endoplasmin homolog OS=Dictyostelium discoideum GN... [more]
ENPLL_HUMAN7.074e-1147.06Putative endoplasmin-like protein OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionC02003F05SK IF1 Citrus clementina cDNA clone C02003F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288720 ID=CX288720; Name=CX288720; organism=Citrus clementina; type=EST; length=561bp
ATTCGGCACGAGGGATGAAGGAAACCTTGAAGGAGAAATTTGAGGGTCTC
TGCAAGGTGATCAAGGATGTTTTGGGTGACAAGGTCGAGAAGGTTGTGGT
GTCTGACCGTGTTGTTGACTCACCCTGCTGTTTGGTGACTGGTGAGTATG
GATGGACAGCCAACATGGAGAGGATCATGAAGGCTCAGGCCTTGAGAGAC
AACAGCATGGCTGGTTACATGTCCAGCAAGAAGACCATGGAGATCAATCC
GGAGAACCCCATCATGGAGGAGCTCANGAAGAGGGCTGATGCGGACAAGA
ATGACAAGTCTGTGAAGGACCTTGTCCTTCTGCTCTTTGAGACTGCTCTC
CTCACTTCTGGTTTCAGCCTTGATGACCCTAACACTTTCGGCAACAGAAT
CCACAGGATGTTGAAACTCGGGCTGAGCATCGAGGAGGATGCTGGTGATG
CTGATGCTGACATGCCACCATTGGAGGATGCTGCTGACGATGCTGAGGGC
AGCAAGATGGAGGAAGTTGATTAAGAAGCTATAATAGTCTGATATACTAG
TCTTTTTTTCA
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