CX288721
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP249_ARATH (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 9.527e-38 Identity = 72/190 (37.89%), Postives = 117/190 (61.58%), Query Frame = 3 Query: 12 KDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 K+ + D + L+D++++CG+ + A ++F+ + + +AW + I A G+ + ++ LF +M+ +KPD V F+ ++AC H G V+ G F+ M + +G+ HY CMVDL GRAG L +A++ I MP P+ +W +LL ACRV GNVE+A A+ + L P+ +G YVLLSN++A AG Sbjct: 498 KNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAG 687 HSP 2 Score: 72.4034 bits (176), Expect = 1.809e-12 Identity = 40/133 (30.08%), Postives = 66/133 (49.62%), Query Frame = 3 Query: 3 LMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEML-NNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKA 398 L++K D ++ L+ YA+CG LD AR VFD M + +W SMI Y KD++ LF M+ + ++ P+ VT + +ISAC +E G + GI + +VD++ + ++ A Sbjct: 159 LIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETG-EKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVA 290 HSP 3 Score: 72.4034 bits (176), Expect = 1.809e-12 Identity = 54/189 (28.57%), Postives = 83/189 (43.92%), Query Frame = 3 Query: 30 DNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHL-------------------------------KDSLALFHEMLNNK-IKPDHVTFLAIISACGHAGQVEAG--IHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELA 494 DNI + LID+Y KC D A +FD M K WNS++A Y +G + ++++ +F M + + + D VT ++I SACGH G ++ I+Y+ E+ GI + +VD+F R G A+ NS+ D W +GA + GN E A Sbjct: 372 DNICNA-LIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYY---IEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLT-NRDVSAWTAAIGAMAMAGNAERA 555
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP148_ARATH (Pentatricopeptide repeat-containing protein At2g04860 OS=Arabidopsis thaliana GN=PCMP-E74 PE=2 SV=2) HSP 1 Score: 156.377 bits (394), Expect = 9.527e-38 Identity = 78/188 (41.49%), Postives = 112/188 (59.57%), Query Frame = 3 Query: 9 IKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHA 572 ++++ ++N + LID+YAKCGN A +VF + A WNSMI+ Y G +L+ + EM +KPD +TFL ++SAC H G V+ G F M +E+GI ++HYA MV L GRA +AL I M PD+ VWG LL AC +H +E+ E + +F LD +N G YVL+SN++A Sbjct: 426 LRNNFENENFVCTALIDMYAKCGNEVQAESVFKSIKAPCTATWNSMISGYSLSGLQHRALSCYLEMREKGLKPDEITFLGVLSACNHGGFVDEGKICFRAMIKEFGISPTLQHYALMVGLLGRACLFTEALYLIWKMDIKPDSAVWGALLSACIIHRELEVGEYVARKMFMLDYKNGGLYVLMSNLYA 613
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP347_ARATH (Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=2 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 1.244e-37 Identity = 76/190 (40.00%), Postives = 114/190 (60.00%), Query Frame = 3 Query: 9 IKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADA 578 +K +C +D + L+D+YAKCG++D A +F + AWN+M+ HG K++L LF +M + IKPD VTF+ ++SAC H+G V + M +YGI +EHY+C+ D GRAG + +A I SM A ++ TLL ACRV G+ E + ++ L +L+P +S YVLLSN++A A Sbjct: 645 LKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAA 834
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PPR60_ARATH (Pentatricopeptide repeat-containing protein At1g26900, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E54 PE=2 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 2.122e-37 Identity = 76/195 (38.97%), Postives = 116/195 (59.49%), Query Frame = 3 Query: 3 LMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEML--NNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 L+ ++ D I + L+D+YAK G L+ A +F+ M K +W +MI+ YG HG ++++ LF++M N K++P+ +TFL +++AC H G V GI F M E Y ++EHY C+VDL GRAG+L +A E I ++P D+ W LL ACRV+GN +L E L ++ + +LL+ HA AG Sbjct: 353 LLEEERIALDAILGTALVDMYAKVGLLEKAVEIFNRMKDKDVKSWTAMISGYGAHGLAREAVTLFNKMEEENCKVRPNEITFLVVLNACSHGGLVMEGIRCFKRMVEAYSFTPKVEHYGCVVDLLGRAGQLEEAYELIRNLPITSDSTAWRALLAACRVYGNADLGESVMMRLAEMGETHPADAILLAGTHAVAG 547 HSP 2 Score: 73.559 bits (179), Expect = 8.121e-13 Identity = 44/145 (30.34%), Postives = 68/145 (46.90%), Query Frame = 3 Query: 45 SVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHG 479 + LI +Y K G + AR +FD RK WN MI Y G L++ + L +M K+KP+ TF+ ++S+C ++ G + EE I +VD++ + G L KA+E N M D W ++ HG Sbjct: 266 TALIGMYGKTGGISSARRIFDCAIRKDVVTWNCMIDQYAKTGLLEECVWLLRQMKYEKMKPNSSTFVGLLSSCAYSEAAFVG-RTVADLLEEERIALDAILGTALVDMYAKVGLLEKAVEIFNRMK-DKDVKSWTAMISGYGAHG 408
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP119_ARATH (Putative pentatricopeptide repeat-containing protein At1g74400 OS=Arabidopsis thaliana GN=PCMP-E68 PE=3 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 2.122e-37 Identity = 79/183 (43.17%), Postives = 107/183 (58.47%), Query Frame = 3 Query: 51 LIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEML------NNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 L+++Y K G + AR +FD RK + SMI Y +G ++SL LF +M + I P+ VTF+ ++ AC H+G VE G +F M +Y + R H+ CMVDLF R+G L A E IN MP P+ +W TLLGAC +HGNVEL E +F+LD + G YV LSNI+A G Sbjct: 210 LLNMYVKSGETEKARKLFDESMRKDVTTYTSMIFGYALNGQAQESLELFKKMKTIDQSQDTVITPNDVTFIGVLMACSHSGLVEEGKRHFKSMIMDYNLKPREAHFGCMVDLFCRSGHLKDAHEFINQMPIKPNTVIWRTLLGACSLHGNVELGEEVQRRIFELDRDHVGDYVALSNIYASKG 392
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP253_ARATH (Putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E96 PE=3 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 2.772e-37 Identity = 70/183 (38.25%), Postives = 112/183 (61.20%), Query Frame = 3 Query: 30 DNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADA 578 D + + L+D+Y+KCG L +R +F+ + RK WN+MI+ YG HG+ ++ ++LF +M + I+PDH TF +++SA H+G VE G H+F M +Y I +HY C++DL RAGR+ +AL+ INS +W LL C H N+ + ++A++ + L+P + G L+SN A A Sbjct: 351 DRVTATALMDMYSKCGALSSSREIFEHVGRKDLVCWNTMISCYGIHGNGQEVVSLFLKMTESNIEPDHATFASLLSALSHSGLVEQGQHWFSVMINKYKIQPSEKHYVCLIDLLARAGRVEEALDMINSEKLDNALPIWVALLSGCINHRNLSVGDIAANKILQLNPDSIGIQTLVSNFFATA 533 HSP 2 Score: 73.559 bits (179), Expect = 8.121e-13 Identity = 49/179 (27.37%), Postives = 87/179 (48.60%), Query Frame = 3 Query: 36 IAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHL----FDLDPQNSGYYVLLS 560 + E+ L+D+YAK G ++ A VF M K +W S+I+ + +G + EM + +PD VT + ++ AC G ++ G HC + + R+ A M D++ + G L+ + E + D W T++ +HGN + EV S L +++P ++ + LLS Sbjct: 253 VVETSLVDMYAKVGFIEVASRVFSRMMFKTAVSWGSLISGFAQNGLANKAFEAVVEMQSLGFQPDLVTLVGVLVACSQVGSLKTG-RLVHCYILKRHVLDRVTATALM-DMYSKCGALSSSREIFEHVG-RKDLVCWNTMISCYGIHGNGQ--EVVSLFLKMTESNIEPDHATFASLLS 426
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP188_ARATH (Pentatricopeptide repeat-containing protein At2g36730 OS=Arabidopsis thaliana GN=PCMP-E44 PE=2 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 2.772e-37 Identity = 76/182 (41.76%), Postives = 114/182 (62.64%), Query Frame = 3 Query: 45 SVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLN-NKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVE---LAEVASSHLFDLDPQNSGYYVLLSNIHADA 578 + L+D+YAK G L++AR VF+ M K W++MI +G +++L LF +M+ + ++P++VTFL ++ AC H G V+ G YFH M + + I M HY MVD+ GRAGRLN+A + I MPF PDA VW TLL AC +H + + + E L +L+P+ SG V+++N A+A Sbjct: 251 TALVDMYAKSGGLEYARLVFERMVDKNVWTWSAMIVGLAQYGFAEEALQLFSKMMKESSVRPNYVTFLGVLCACSHTGLVDDGYKYFHEMEKIHKIKPMMIHYGAMVDILGRAGRLNEAYDFIKKMPFEPDAVVWRTLLSACSIHHDEDDEGIGEKVKKRLIELEPKRSGNLVIVANRFAEA 432
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP231_ARATH (Pentatricopeptide repeat-containing protein At3g14730 OS=Arabidopsis thaliana GN=PCMP-E31 PE=2 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 4.728e-37 Identity = 74/185 (40.00%), Postives = 112/185 (60.54%), Query Frame = 3 Query: 27 SDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 S+ + L+D+Y KCG+L AR VFD M K A+WN MI YG + +L +F M +KPD +TF+ ++ AC H+G + G ++ M Y I +HYAC++D+ GRA +L +A E S P + VW ++L +CR+HGN +LA VA L +L+P++ G YVL+SN++ +AG Sbjct: 400 SNEFIHNSLMDMYVKCGDLRDARMVFDSMRVKDSASWNIMINGYGVQSCGELALDMFSCMCRAGVKPDEITFVGLLQACSHSGFLNEGRNFLAQMETVYNILPTSDHYACVIDMLGRADKLEEAYELAISKPICDNPVVWRSILSSCRLHGNKDLALVAGKRLHELEPEHCGGYVLMSNVYVEAG 584 HSP 2 Score: 69.3218 bits (168), Expect = 1.532e-11 Identity = 46/167 (27.54%), Postives = 78/167 (46.71%), Query Frame = 3 Query: 3 LMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAG--IHYFHCMTEEYGIPARMEH-YACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELA 494 L +K SD + + LID+Y K L+ A ++F+ M + WNS++ + G +LALF ML + I+PD VT ++ CG + G IH + ++ + E + ++D++ + G L A +SM D+ W ++ V ELA Sbjct: 287 LAVKTGSGSDIVVSNALIDMYGKSKWLEEANSIFEAMDERDLFTWNSVLCVHDYCGDHDGTLALFERMLCSGIRPDIVTLTTVLPTCGRLASLRQGREIHGYMIVSGLLNRKSSNEFIHNSLMDMYVKCGDLRDARMVFDSMR-VKDSASWNIMINGYGVQSCGELA 452
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PPR69_ARATH (Pentatricopeptide repeat-containing protein At1g32415, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E56 PE=2 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 8.065e-37 Identity = 78/188 (41.49%), Postives = 115/188 (61.17%), Query Frame = 3 Query: 30 DNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVE----LAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 D I ++ L+ +YAKCG ++ A +F M +K +WNSMI HG +L LF EML++ KP+ VTFL ++SAC H+G + G+ F M E Y I ++HY M+DL GRAG+L +A E I+++PF PD V+G LLG C ++ + +AE A+ L +LDP N+ +V L N++A G Sbjct: 502 DLILQNSLVSMYAKCGAIEDAYEIFAKMVQKDTVSWNSMIMGLSHHGLADKALNLFKEMLDSGKKPNSVTFLGVLSACSHSGLITRGLELFKAMKETYSIQPGIDHYISMIDLLGRAGKLKEAEEFISALPFTPDHTVYGALLGLCGLNWRDKDAEGIAERAAMRLLELDPVNAPGHVALCNVYAGLG 689
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP309_ARATH (Pentatricopeptide repeat-containing protein At4g14170 OS=Arabidopsis thaliana GN=PCMP-E17 PE=2 SV=2) HSP 1 Score: 153.295 bits (386), Expect = 8.065e-37 Identity = 78/188 (41.49%), Postives = 110/188 (58.51%), Query Frame = 3 Query: 18 SCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 SC N+ ++ D+Y KC LD+A TVF M R+ +W+S+I YG G + S LF EML I+P+ VTFL ++SAC H G VE YF M +EY I ++HYA + D RAG L +A + + MP PD V G +L C+V+GNVE+ E + L L P+ + YYV L+ +++ AG Sbjct: 266 SCLGLNLGNAIT-DMYVKCSILDYAHTVFVNMSRRDVISWSSLILGYGLDGDVVMSFKLFDEMLKEGIEPNAVTFLGVLSACAHGGLVEKSWLYFRLM-QEYNIVPELKHYASVADCMSRAGLLEEAEKFLEDMPVKPDEAVMGAVLSGCKVYGNVEVGERVARELIQLKPRKASYYVTLAGLYSAAG 451 The following BLAST results are available for this feature:
BLAST of CX288721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 200
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288721 ID=CX288721; Name=CX288721; organism=Citrus clementina; type=EST; length=581bpback to top |