CX288721
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP246_ARATH (Pentatricopeptide repeat-containing protein At3g22150, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E95 PE=2 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 3.388e-35 Identity = 72/180 (40.00%), Postives = 111/180 (61.67%), Query Frame = 3 Query: 45 SVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPD-AGVWGTLLGACRVHGNVELAEVASSHL--FDLDPQNSGYYVLLSNIHAD 575 S L+D+Y+K G + +A +F + + +MI YG HG + +++LF M + IKPD +TF+A++SAC ++G ++ G+ F M E Y I EHY C+ D+ GR GR+N+A E + + + A +WG+LLG+C++HG +ELAE S L FD SGY VLLSN++A+ Sbjct: 560 SALVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMILGYGQHGMGERAISLFLSMQESGIKPDAITFVAVLSACSYSGLIDEGLKIFEEMREVYNIQPSSEHYCCITDMLGRVGRVNEAYEFVKGLGEEGNIAELWGSLLGSCKLHGELELAETVSERLAKFDKGKNFSGYEVLLSNMYAE 739 HSP 2 Score: 68.1662 bits (165), Expect = 3.412e-11 Identity = 43/152 (28.29%), Postives = 78/152 (51.32%), Query Frame = 3 Query: 45 SVLIDLYAKCGNLDFARTVFDMMX--RKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELA 494 S LID+Y+K G + ++ +F+ + +A WNSMI+ Y +GH + + +F +ML I+P+ VT +I+ AC G V+ G +Y + + + +VD++ +AG + K E + S ++ + T++ HG E A Sbjct: 457 SYLIDMYSKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEKTFLVFRKMLEQNIRPNAVTVASILPACSQIGSVDLGKQLHGFSIRQY-LDQNVFVASALVDMYSKAGAI-KYAEDMFSQTKERNSVTYTTMILGYGQHGMGERA 606
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP195_ARATH (Pentatricopeptide repeat-containing protein At2g39620 OS=Arabidopsis thaliana GN=PCMP-E33 PE=2 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 3.388e-35 Identity = 71/166 (42.77%), Postives = 102/166 (61.45%), Query Frame = 3 Query: 51 LIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYY 548 L+D+YAKCG ++ + F + K +WN+M++AY HG +++LF M N++KPD V+FL+++SAC HAG VE G F M E + I A +EHYACMVDL G+AG +A+E + M GVWG LL + R+H N+ L+ A L L+P N +Y Sbjct: 645 LVDMYAKCGMIESSEKCFIEISNKYIVSWNTMLSAYAAHGLASCAVSLFLSMQENELKPDSVSFLSVLSACRHAGLVEEGKRIFEEMGERHKIEAEVEHYACMVDLLGKAGLFGEAVEMMRRMRVKTSVGVWGALLNSSRMHCNLWLSNAALCQLVKLEPLNPSHY 810 HSP 2 Score: 72.0182 bits (175), Expect = 2.363e-12 Identity = 33/124 (26.61%), Postives = 65/124 (52.42%), Query Frame = 3 Query: 51 LIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMP 422 L+ +Y+KCG L+ A +F + + +W++MIA+Y G ++++LF +M+ IKP+ VT +++ C G HC + I + +E ++ ++ + GR + AL+ +P Sbjct: 341 LMSMYSKCGELEIAEQLFINIEDRDVVSWSAMIASYEQAGQHDEAISLFRDMMRIHIKPNAVTLTSVLQGCAGVAASRLG-KSIHCYAIKADIESELETATAVISMYAKCGRFSPALKAFERLP 463
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PPR55_ARATH (Pentatricopeptide repeat-containing protein At1g22830 OS=Arabidopsis thaliana GN=PCMP-E24 PE=2 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 4.425e-35 Identity = 73/178 (41.01%), Postives = 113/178 (63.48%), Query Frame = 3 Query: 51 LIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAE-VASSHLFDLDPQNSGYYVLLSNIHADAG 581 L+D+YAK G + A+ VFD M ++ + + S+I YG G + +LA F +M + IKPDHVT +A++SAC H+ V G F M +GI R+EHY+CMVDL+ RAG L+KA + +++P+ P + + TLL AC +HGN + E A L + P++ G+Y+LL++++A G Sbjct: 465 LVDMYAKSGEIIAAKRVFDSMRKRDKVTYTSLIDGYGRLGKGEVALAWFKDMDRSGIKPDHVTMVAVLSACSHSNLVREGHWLFTKMEHVFGIRLRLEHYSCMVDLYCRAGYLDKARDIFHTIPYEPSSAMCATLLKACLIHGNTNIGEWAADKLLLETKPEHLGHYMLLADMYAVTG 642
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP398_ARATH (Pentatricopeptide repeat-containing protein At5g27110 OS=Arabidopsis thaliana GN=PCMP-E14 PE=2 SV=2) HSP 1 Score: 147.132 bits (370), Expect = 5.780e-35 Identity = 74/183 (40.44%), Postives = 112/183 (61.20%), Query Frame = 3 Query: 27 SDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHA 572 +D + S L+D+Y+KCGN A +F+ + +K +W MI+AYG HG +++L F EM +KPD VT LA++SACGHAG ++ G+ +F M +YGI +EHY+CM+D+ GRAGRL +A E I P D A + TL AC +H L + + L + P ++ Y++L N++A Sbjct: 443 TDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGIEPIIEHYSCMIDILGRAGRLLEAYEIIQQTPETSDNAELLSTLFSACCLHLEHSLGDRIARLLVENYPDDASTYMVLFNLYA 625 HSP 2 Score: 78.1814 bits (191), Expect = 3.297e-14 Identity = 50/187 (26.74%), Postives = 84/187 (44.92%), Query Frame = 3 Query: 6 MIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVE--LAEVASSHLFDLDPQNSGYYVLLS 560 +I+ +D LIDLY KCG + A TVF + +WN MI++Y G+ ++ ++ +M++ +KPD VTF +++ AC +E G H E + + ++D++ + G +A NS+P D W ++ A HG L + F L P +LS Sbjct: 335 VIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKG-KQIHLSISESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIP-KKDVVSWTVMISAYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVLS 519 HSP 3 Score: 73.559 bits (179), Expect = 8.121e-13 Identity = 46/158 (29.11%), Postives = 70/158 (44.30%), Query Frame = 3 Query: 9 IKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGN 482 +K D S L+D+Y KC L+ AR VF M RK AWNSMI Y G K + + + M+ +P T +I+ AC + + G + H + A + ++DL+ + G N A ET+ S A W ++ + GN Sbjct: 235 VKKGFELDEYVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSRNLLHG-KFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLA-ETVFSKTQKDVAESWNVMISSYISVGN 390
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP268_ARATH (Putative pentatricopeptide repeat-containing protein At3g47840 OS=Arabidopsis thaliana GN=PCMP-E43 PE=3 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 5.780e-35 Identity = 72/184 (39.13%), Postives = 110/184 (59.78%), Query Frame = 3 Query: 30 DNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 ++ S LI++Y+KCG++ A +F R + +MI Y HG K+++ LF + L +PD VTF+++++AC H+GQ++ G HYF+ M E Y + EHY CMVDL RAGRL+ A + IN M + D VW TLL AC+ G++E A+ + +LDP + V L+NI++ G Sbjct: 445 NSTVRSSLINMYSKCGSIKEASMIFGETDRDDIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFRPDSVTFISVLTACTHSGQLDLGFHYFNMMQETYNMRPAKEHYGCMVDLLCRAGRLSDAEKMINEMSWKKDDVVWTTLLIACKAKGDIERGRRAAERILELDPTCATALVTLANIYSSTG 628
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP324_ARATH (Pentatricopeptide repeat-containing protein At4g19220, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E2 PE=2 SV=2) HSP 1 Score: 146.747 bits (369), Expect = 7.548e-35 Identity = 67/193 (34.72%), Postives = 119/193 (61.66%), Query Frame = 3 Query: 6 MIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNN-KIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 +I+ +++ + L+D+Y+ CG L+ VF +AWNS+I+A+G HG + ++ LF E+ +N +++P+ +F++++SAC H+G ++ G+ Y+ M E++G+ EH +VD+ GRAG+L +A E I + AGVWG LL AC HG+ +L + + LF+++P N+ YY+ L+N + G Sbjct: 724 LIRRGFQANPFVSAALVDMYSSCGMLETGMKVFRNSGVNSISAWNSVISAHGFHGMGEKAMELFKELSSNSEMEPNKSSFISLLSACSHSGFIDEGLSYYKQMEEKFGVKPVTEHRVWIVDMLGRAGKLREAYEFITGIGEPQKAGVWGALLSACNYHGDTKLGKEVAEVLFEMEPDNASYYISLANTYVGLG 916
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP214_ARATH (Putative pentatricopeptide repeat-containing protein At3g05240 OS=Arabidopsis thaliana GN=PCMP-E82 PE=3 SV=2) HSP 1 Score: 146.747 bits (369), Expect = 7.548e-35 Identity = 69/178 (38.76%), Postives = 104/178 (58.43%), Query Frame = 3 Query: 51 LIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNN-KIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 L+++YAK G+ + A+ F+ + +K AW +I HGH ++L++F M PD +T+L ++ AC H G VE G YF M + +G+ +EHY CMVD+ RAGR +A + +MP P+ +WG LL C +H N+EL + S + + + SG YVLLSNI+A AG Sbjct: 358 LVNMYAKTGDAESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGITYLGVLYACSHIGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVKPNVNIWGALLNGCDIHENLELTDRIRSMVAEPEELGSGIYVLLSNIYAKAG 535 HSP 2 Score: 75.485 bits (184), Expect = 2.137e-13 Identity = 45/149 (30.20%), Postives = 73/149 (48.99%), Query Frame = 3 Query: 36 IAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGN 482 I + LID+YAKCG+L AR +FD M + +WNS+I Y +G +++L +F +ML+ I PD VTFL++I A G + G H + G +V+++ + G A + + D W ++ HG+ Sbjct: 252 ILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGIAPDKVTFLSVIRASMIQGCSQLG-QSIHAYVSKTGFVKDAAIVCALVNMYAKTGDAESAKKAFEDLE-KKDTIAWTVVIIGLASHGH 398
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP191_ARATH (Pentatricopeptide repeat-containing protein At2g37310 OS=Arabidopsis thaliana GN=PCMP-E49 PE=2 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 7.548e-35 Identity = 74/191 (38.74%), Postives = 111/191 (58.12%), Query Frame = 3 Query: 9 IKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 I++ ++ + +ID YAK G L A+ VFD + AW ++I AY HG + +LF +M KPD VT A++SA H+G + H F M +Y I +EHYACMV + RAG+L+ A+E I+ MP P A VWG LL V G++E+A A LF+++P+N+G Y +++N++ AG Sbjct: 393 IRNGADNNIYVTTSIIDNYAKLGFLLGAQRVFDNCKDRSLIAWTAIITAYAVHGDSDSACSLFDQMQCLGTKPDDVTLTAVLSAFAHSGDSDMAQHIFDSMLTKYDIEPGVEHYACMVSVLSRAGKLSDAMEFISKMPIDPIAKVWGALLNGASVLGDLEIARFACDRLFEMEPENTGNYTIMANLYTQAG 583 HSP 2 Score: 74.3294 bits (181), Expect = 4.761e-13 Identity = 51/191 (26.70%), Postives = 87/191 (45.55%), Query Frame = 3 Query: 6 MIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLN-NKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHL--FDLDPQNSGYYVLLSNIH 569 +I+ SD + +I Y KC N++ AR VFD M + +WNSMI+ Y G +D ++ ML + KP+ VT +++ ACG + + G+ M E + I + ++ + + G L+ A + M D+ +G ++ HG V+ A S + L N+ L+ N H Sbjct: 158 VIRGGFDSDVFVGNGMITYYTKCDNIESARKVFDEMSERDVVSWNSMISGYSQSGSFEDCKKMYKAMLACSDFKPNGVTVISVFQACGQSSDLIFGLEVHKKMIENH-IQMDLSLCNAVIGFYAKCGSLDYARALFDEMS-EKDSVTYGAIISGYMAHGLVKEAMALFSEMESIGLSTWNAMISGLMQNNH 346
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP377_ARATH (Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 1.288e-34 Identity = 69/192 (35.94%), Postives = 114/192 (59.38%), Query Frame = 3 Query: 3 LMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADA 578 L IK + + LID+YAKCG++ FA++VF+ M A+WN++I+ Y HG + +L + M + KP+ +TFL ++S C +AG ++ G F M ++GI +EHY CMV L GR+G+L+KA++ I +P+ P +W +L A N E A ++ + ++P++ YVL+SN++A A Sbjct: 474 LAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAMLSASMNQNNEEFARRSAEEILKINPKDEATYVLVSNMYAGA 665 HSP 2 Score: 72.7886 bits (177), Expect = 1.385e-12 Identity = 41/159 (25.79%), Postives = 72/159 (45.28%), Query Frame = 3 Query: 3 LMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHG 479 L++K D + LID+YAKC +D A +F + K E +WN++I Y G + ++F E L N++ VTF + + AC ++ G+ H + + ++ ++D++ + G + A N M D W L+ HG Sbjct: 373 LVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGVQ-VHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEME-TIDVASWNALISGYSTHG 529
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP185_ARATH (Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E15 PE=2 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 1.288e-34 Identity = 73/195 (37.44%), Postives = 113/195 (57.95%), Query Frame = 3 Query: 3 LMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFD--MMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 L+ K + + I S L+++Y+K G L AR +FD ++ ++ +WNSMIA Y HGH K+++ ++++M + KP VT+L ++ AC HAG VE G+ +F + + +P R EHY C+VDL GRAGRL IN +G +L AC VH V +A+ + + ++G YVL+SNI+A G Sbjct: 356 LISKSVHQKNEIVTSALLNMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYNQMRKHGFKPSAVTYLNLLFACSHAGLVEKGMEFFKDLVRDESLPLREEHYTCLVDLCGRAGRLKDVTNFINCDDARLSRSFYGAILSACNVHNEVSIAKEVVKKVLETGSDDAGTYVLMSNIYAANG 550 The following BLAST results are available for this feature:
BLAST of CX288721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 200
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288721 ID=CX288721; Name=CX288721; organism=Citrus clementina; type=EST; length=581bpback to top |