CX288721

Overview
NameCX288721
Unique NameCX288721
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length581
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP243_ARATH (Pentatricopeptide repeat-containing protein At3g18970 OS=Arabidopsis thaliana GN=PCMP-E93 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.801e-28
Identity = 65/186 (34.95%), Postives = 103/186 (55.38%), Query Frame = 3
Query:   45 SVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGY-------YVLLSNIHADAG 581
            + L+D+Y+KCG L+ A +VF++M  K    W SM      +G   ++  L + M  + IKP+ +TF +++SA  H G VE GI  F  M   +G+   +EHY C+VDL G+AGR+ +A + I +MP  PDA +  +L  AC ++G   + E     L +++ ++          YV LSN+ A  G
Sbjct:  261 TALVDMYSKCGCLNNAFSVFELMKVKNVFTWTSMATGLALNGRGNETPNLLNRMAESGIKPNEITFTSLLSAYRHIGLVEEGIELFKSMKTRFGVTPVIEHYGCIVDLLGKAGRIQEAYQFILAMPIKPDAILLRSLCNACSIYGETVMGEEIGKALLEIEREDEKLSGSECEDYVALSNVLAHKG 446          
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP286_ARATH (Pentatricopeptide repeat-containing protein At3g58590 OS=Arabidopsis thaliana GN=At3g58590 PE=2 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 1.991e-27
Identity = 61/150 (40.67%), Postives = 87/150 (58.00%), Query Frame = 3
Query:   18 SCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGAC 467
            SC +D    +VLID+Y KCG++     VF+    K    W ++I+  G HG+ +++L  F E L+   KPD V+F++I++AC H G V+ G+  F  M ++YG+   M+HY C VDL  R G L +A   I  MPF  DA VW T L  C
Sbjct:  577 SC-ADTFVCNVLIDMYGKCGSIRSVMKVFEETREKNLITWTALISCLGIHGYGQEALEKFKETLSLGFKPDRVSFISILTACRHGGMVKEGMGLFQKM-KDYGVEPEMDHYRCAVDLLARNGYLKEAEHLIREMPFPADAPVWRTFLDGC 724          
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP245_ARATH (Pentatricopeptide repeat-containing protein At3g21470 OS=Arabidopsis thaliana GN=PCMP-E29 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.396e-27
Identity = 58/156 (37.18%), Postives = 95/156 (60.90%), Query Frame = 3
Query:   30 DNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAE 497
            +    + LID+YAKCG+L+ A +VF+ +  +  A  NSMI+    HG  K++L +F  M +  +KPD +TF+A+++AC H G +  G+  F  M  +  +   ++H+ C++ L GR+G+L +A   +  M   P+  V G LLGAC+VH + E+AE
Sbjct:  308 NQFVSNALIDMYAKCGDLENATSVFESISVRSVACCNSMISCLAIHGKGKEALEMFSTMESLDLKPDEITFIAVLTACVHGGFLMEGLKIFSEMKTQ-DVKPNVKHFGCLIHLLGRSGKLKEAYRLVKEMHVKPNDTVLGALLGACKVHMDTEMAE 462          

HSP 2 Score: 67.0106 bits (162), Expect = 7.601e-11
Identity = 40/174 (22.99%), Postives = 79/174 (45.40%), Query Frame = 3
Query:   45 SVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVE--LAEVASSHLFDLDPQNSGYYVLLS 560
            S+++  Y + G++  AR +F  +  +    WN++IA Y  +G+  D++  F  M     +PD VT  +I+SAC  +G+++ G    H +    GI         ++D++ + G L  A     S+          +++    +HG  +  L   ++    DL P    +  +L+
Sbjct:  212 SLMMSGYFRIGDVHEARAIFYRVFARDLVIWNTLIAGYAQNGYSDDAIDAFFNMQGEGYEPDAVTVSSILSACAQSGRLDVG-REVHSLINHRGIELNQFVSNALIDMYAKCGDLENATSVFESIS-VRSVACCNSMISCLAIHGKGKEALEMFSTMESLDLKPDEITFIAVLT 383          
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP159_ARATH (Pentatricopeptide repeat-containing protein At2g17210 OS=Arabidopsis thaliana GN=PCMP-E77 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 5.793e-27
Identity = 65/177 (36.72%), Postives = 100/177 (56.50%), Query Frame = 3
Query:   51 LIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAG--VWGTLLGACRVH-GNVELAEVASSHLFDLDPQNSGYYVLLSNIHA 572
            ++D YAKCG ++ AR  FD +  K   +W  +I+AY  +G    +LALF EM      P+ VT+LA +SAC H G V+ G+  F  M EE   P+ ++HY+C+VD+  RAG ++ A+E I ++P    AG   WG +L  CR     + +     + + +L+P  S  Y+L S+  A
Sbjct:  489 IVDAYAKCGAIEMARRTFDQITEKNIISWTVIISAYAINGLPDKALALFDEMKQKGYTPNAVTYLAALSACNHGGLVKKGLMIFKSMVEEDHKPS-LQHYSCIVDMLSRAGEIDTAVELIKNLPEDVKAGASAWGAILSGCRNRFKKLIITSEVVAEVLELEPLCSSGYLLASSTFA 664          
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PPR73_ARATH (Pentatricopeptide repeat-containing protein At1g43980, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E58 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.291e-26
Identity = 63/190 (33.16%), Postives = 106/190 (55.79%), Query Frame = 3
Query:    3 LMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEML-NNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIH 569
            L+IK     D    + L+++Y K G++D A  VF     K    WN++I     +    +SLA+F+++L N  +KPD VT + I+ AC +AG V  GI  F  M + +G+    EHYAC+++L  R G +N+A +  + +PF P + +W  +L A    G+  LAE  +  + + +P++S  Y++L  I+
Sbjct:  372 LVIKLGFDLDTAVATSLMEMYFKTGSVDLAMGVFAKTDGKDLIFWNTVIMGLARNSRAVESLAIFNQLLMNQSLKPDRVTLMGILVACCYAGFVNEGIQIFSSMEKAHGVNPGNEHYACIIELLCRVGMINEAKDIADKIPFEPSSHIWEPILCASLDLGDTRLAETVAKTMLESEPKSSFPYLVLIKIY 561          
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP257_ARATH (Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidopsis thaliana GN=PCMP-A6 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.904e-26
Identity = 64/157 (40.76%), Postives = 90/157 (57.32%), Query Frame = 3
Query:   45 SVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNN-KIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSH 512
            + LID+Y+KCG+L  AR VFD+M  K  A WNSMI + G HG  +++L+LF EM     ++PD +TF+ ++SAC + G V+ G+ YF  M + YGI    EH ACM+ L  +A  + KA   + SM   PD   + +  G     G  E  E  S H
Sbjct:  290 TALIDMYSKCGSLQDARKVFDVMQGKSLATWNSMITSLGVHGCGEEALSLFEEMEEEASVEPDAITFVGVLSACANTGNVKDGLRYFTRMIQVYGISPIREHNACMIQLLEQALEVEKASNLVESMDSDPD---FNSSFGNEYTDGMNETNETPSQH 443          
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP153_ARATH (Pentatricopeptide repeat-containing protein At2g15690 OS=Arabidopsis thaliana GN=PCMP-H66 PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 8.365e-26
Identity = 55/177 (31.07%), Postives = 95/177 (53.67%), Query Frame = 3
Query:    9 IKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNS 539
            ++   R D    +++I ++ +C ++  A+ VFD M  K   +W+ M+ AY  +G   D+L LF EM  + +KP+  TFL +  AC   G +E    +F  M  E+GI  + EHY  ++ + G+ G L +A + I  +PF P A  W  +    R+HG+++L +     + D+DP  +
Sbjct:  263 LQSKFRGDPKLNNMVISMFGECSSITDAKRVFDHMVDKDMDSWHLMMCAYSDNGMGDDALHLFEEMTKHGLKPNEETFLTVFLACATVGGIEEAFLHFDSMKNEHGISPKTEHYLGVLGVLGKCGHLVEAEQYIRDLPFEPTADFWEAMRNYARLHGDIDLEDYMEELMVDVDPSKA 439          
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP448_ARATH (Pentatricopeptide repeat-containing protein At5g66500, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E38 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.427e-25
Identity = 65/192 (33.85%), Postives = 101/192 (52.60%), Query Frame = 3
Query:   27 SDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLN--NKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPD----AGVWGTLLGACRVHGNVELAEVASSHLF-DLDPQNSGYYVLLSNIHADAG 581
            SD+   + L+D+Y KCG +  ART+F  +  K   +W SMI AY  +G    +L +F EM    + + P+ VTFL +ISAC HAG V+ G   F  M E+Y +    EHY C +D+  +AG   +    +  M    +      +W  +L AC ++ ++   E  +  L  +  P+N+  YVL+SN +A  G
Sbjct:  314 SDSKLCNGLMDMYGKCGQIVQARTIFRAIPSKSVVSWTSMIDAYAVNGDGVKALEIFREMCEEGSGVLPNSVTFLVVISACAHAGLVKEGKECFGMMKEKYRLVPGTEHYVCFIDILSKAGETEEIWRLVERMMENDNQSIPCAIWVAVLSACSLNMDLTRGEYVARRLMEETGPENASIYVLVSNFYAAMG 505          
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP170_ARATH (Pentatricopeptide repeat-containing protein At2g25580 OS=Arabidopsis thaliana GN=PCMP-H75 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 3.515e-24
Identity = 56/167 (33.53%), Postives = 90/167 (53.89%), Query Frame = 3
Query:   30 DNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDP 530
            D  +  VL+++Y+ CG  + A +VF+ M  K    W  +I  +  +G  +D++ +F         PD   F  I  ACG  G V+ G+ +F  M+ +YGI   +E Y  +V+++   G L++ALE +  MP  P+  VW TL+   RVHGN+EL +  +  +  LDP
Sbjct:  288 DLSSNHVLLEMYSNCGLANEAASVFEKMSEKNLETWCIIIRCFAKNGFGEDAIDMFSRFKEEGNIPDGQLFRGIFYACGMLGDVDEGLLHFESMSRDYGIAPSIEDYVSLVEMYALPGFLDEALEFVERMPMEPNVDVWETLMNLSRVHGNLELGDYCAEVVEFLDP 454          
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP423_ARATH (Putative pentatricopeptide repeat-containing protein At5g47460 OS=Arabidopsis thaliana GN=PCMP-E103 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.830e-24
Identity = 59/183 (32.24%), Postives = 98/183 (53.55%), Query Frame = 3
Query:   36 IAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNK-IKPDHVTFLAIISACGHAG-QVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDL-DPQNSGY-YVLLSNIHA 572
            +  S LID+Y+KCG L  A  +F  M RK    WN MI+ Y  +G   +++ LF+++   + +KPD  TFL +++ C H    +E  + YF  M  EY I   +EH   ++   G+ G + +A + I    F  D   W  LLGAC    +++ A+  ++ + +L D     Y Y+++SN++A
Sbjct:  356 VVASALIDMYSKCGMLKHAELMFWTMPRKNLIVWNEMISGYARNGDSIEAIKLFNQLKQERFLKPDRFTFLNLLAVCSHCEVPMEVMLGYFEMMINEYRIKPSVEHCCSLIRAMGQRGEVWQAKQVIQEFGFGYDGVAWRALLGACSARKDLKAAKTVAAKMIELGDADKDEYLYIVMSNLYA 538          
The following BLAST results are available for this feature:
BLAST of CX288721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
PP243_ARATH1.801e-2834.95Pentatricopeptide repeat-containing protein At3g18... [more]
PP286_ARATH1.991e-2740.67Pentatricopeptide repeat-containing protein At3g58... [more]
PP245_ARATH3.396e-2737.18Pentatricopeptide repeat-containing protein At3g21... [more]
PP159_ARATH5.793e-2736.72Pentatricopeptide repeat-containing protein At2g17... [more]
PPR73_ARATH1.291e-2633.16Pentatricopeptide repeat-containing protein At1g43... [more]
PP257_ARATH4.904e-2640.76Pentatricopeptide repeat-containing protein At3g26... [more]
PP153_ARATH8.365e-2631.07Pentatricopeptide repeat-containing protein At2g15... [more]
PP448_ARATH1.427e-2533.85Pentatricopeptide repeat-containing protein At5g66... [more]
PP170_ARATH3.515e-2433.53Pentatricopeptide repeat-containing protein At2g25... [more]
PP423_ARATH7.830e-2432.24Putative pentatricopeptide repeat-containing prote... [more]

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Properties
Property NameValue
Genbank descriptionC02003F06SK IF1 Citrus clementina cDNA clone C02003F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288721 ID=CX288721; Name=CX288721; organism=Citrus clementina; type=EST; length=581bp
GTTTGATGATAAAAGATTCCTGCCGCTCTGATAATATTGCTGAGAGTGTA
CTGATAGACTTGTATGCTAAATGTGGAAACTTGGATTTTGCTCGTACTGT
TTTTGACATGATGCANAGGAAGCAGGAAGCTGCATGGAATAGCATGATTG
CTGCTTATGGATGCCACGGCCATCTNAAGGACTCTCTTGCTCTTTTCCAT
GAAATGTTAAATAATAAAATCAAGCCAGATCATGTCACGTTTCTCGCTAT
AATATCTGCTTGTGGCCATGCTGGCCAAGTTGAAGCTGGAATTCATTACT
TCCATTGTATGACTGAAGAATATGGAATCCCAGCTCGCATGGAGCACTAT
GCATGCATGGTAGATTTGTTTGGGCGTGCTGGTCGTTTGAATAAGGCATT
AGAGACCATAAACAGTATGCCATTTGCACCTGATGCAGGTGTCTGGGGAA
CGTTGCTGGGAGCATGTCGGGTCCATGGCAATGTTGAGCTAGCTGAAGTG
GCTTCAAGTCATCTGTTTGATTTAGACCCACAAAACTCAGGCTACTATGT
GCTGCTTTCAAATATACATGCTGATGCTGGA
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