CX288721
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP243_ARATH (Pentatricopeptide repeat-containing protein At3g18970 OS=Arabidopsis thaliana GN=PCMP-E93 PE=2 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 1.801e-28 Identity = 65/186 (34.95%), Postives = 103/186 (55.38%), Query Frame = 3 Query: 45 SVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGY-------YVLLSNIHADAG 581 + L+D+Y+KCG L+ A +VF++M K W SM +G ++ L + M + IKP+ +TF +++SA H G VE GI F M +G+ +EHY C+VDL G+AGR+ +A + I +MP PDA + +L AC ++G + E L +++ ++ YV LSN+ A G Sbjct: 261 TALVDMYSKCGCLNNAFSVFELMKVKNVFTWTSMATGLALNGRGNETPNLLNRMAESGIKPNEITFTSLLSAYRHIGLVEEGIELFKSMKTRFGVTPVIEHYGCIVDLLGKAGRIQEAYQFILAMPIKPDAILLRSLCNACSIYGETVMGEEIGKALLEIEREDEKLSGSECEDYVALSNVLAHKG 446
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP286_ARATH (Pentatricopeptide repeat-containing protein At3g58590 OS=Arabidopsis thaliana GN=At3g58590 PE=2 SV=2) HSP 1 Score: 122.094 bits (305), Expect = 1.991e-27 Identity = 61/150 (40.67%), Postives = 87/150 (58.00%), Query Frame = 3 Query: 18 SCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGAC 467 SC +D +VLID+Y KCG++ VF+ K W ++I+ G HG+ +++L F E L+ KPD V+F++I++AC H G V+ G+ F M ++YG+ M+HY C VDL R G L +A I MPF DA VW T L C Sbjct: 577 SC-ADTFVCNVLIDMYGKCGSIRSVMKVFEETREKNLITWTALISCLGIHGYGQEALEKFKETLSLGFKPDRVSFISILTACRHGGMVKEGMGLFQKM-KDYGVEPEMDHYRCAVDLLARNGYLKEAEHLIREMPFPADAPVWRTFLDGC 724
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP245_ARATH (Pentatricopeptide repeat-containing protein At3g21470 OS=Arabidopsis thaliana GN=PCMP-E29 PE=2 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 3.396e-27 Identity = 58/156 (37.18%), Postives = 95/156 (60.90%), Query Frame = 3 Query: 30 DNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAE 497 + + LID+YAKCG+L+ A +VF+ + + A NSMI+ HG K++L +F M + +KPD +TF+A+++AC H G + G+ F M + + ++H+ C++ L GR+G+L +A + M P+ V G LLGAC+VH + E+AE Sbjct: 308 NQFVSNALIDMYAKCGDLENATSVFESISVRSVACCNSMISCLAIHGKGKEALEMFSTMESLDLKPDEITFIAVLTACVHGGFLMEGLKIFSEMKTQ-DVKPNVKHFGCLIHLLGRSGKLKEAYRLVKEMHVKPNDTVLGALLGACKVHMDTEMAE 462 HSP 2 Score: 67.0106 bits (162), Expect = 7.601e-11 Identity = 40/174 (22.99%), Postives = 79/174 (45.40%), Query Frame = 3 Query: 45 SVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVE--LAEVASSHLFDLDPQNSGYYVLLS 560 S+++ Y + G++ AR +F + + WN++IA Y +G+ D++ F M +PD VT +I+SAC +G+++ G H + GI ++D++ + G L A S+ +++ +HG + L ++ DL P + +L+ Sbjct: 212 SLMMSGYFRIGDVHEARAIFYRVFARDLVIWNTLIAGYAQNGYSDDAIDAFFNMQGEGYEPDAVTVSSILSACAQSGRLDVG-REVHSLINHRGIELNQFVSNALIDMYAKCGDLENATSVFESIS-VRSVACCNSMISCLAIHGKGKEALEMFSTMESLDLKPDEITFIAVLT 383
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP159_ARATH (Pentatricopeptide repeat-containing protein At2g17210 OS=Arabidopsis thaliana GN=PCMP-E77 PE=2 SV=2) HSP 1 Score: 120.553 bits (301), Expect = 5.793e-27 Identity = 65/177 (36.72%), Postives = 100/177 (56.50%), Query Frame = 3 Query: 51 LIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAG--VWGTLLGACRVH-GNVELAEVASSHLFDLDPQNSGYYVLLSNIHA 572 ++D YAKCG ++ AR FD + K +W +I+AY +G +LALF EM P+ VT+LA +SAC H G V+ G+ F M EE P+ ++HY+C+VD+ RAG ++ A+E I ++P AG WG +L CR + + + + +L+P S Y+L S+ A Sbjct: 489 IVDAYAKCGAIEMARRTFDQITEKNIISWTVIISAYAINGLPDKALALFDEMKQKGYTPNAVTYLAALSACNHGGLVKKGLMIFKSMVEEDHKPS-LQHYSCIVDMLSRAGEIDTAVELIKNLPEDVKAGASAWGAILSGCRNRFKKLIITSEVVAEVLELEPLCSSGYLLASSTFA 664
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PPR73_ARATH (Pentatricopeptide repeat-containing protein At1g43980, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E58 PE=2 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.291e-26 Identity = 63/190 (33.16%), Postives = 106/190 (55.79%), Query Frame = 3 Query: 3 LMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEML-NNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIH 569 L+IK D + L+++Y K G++D A VF K WN++I + +SLA+F+++L N +KPD VT + I+ AC +AG V GI F M + +G+ EHYAC+++L R G +N+A + + +PF P + +W +L A G+ LAE + + + +P++S Y++L I+ Sbjct: 372 LVIKLGFDLDTAVATSLMEMYFKTGSVDLAMGVFAKTDGKDLIFWNTVIMGLARNSRAVESLAIFNQLLMNQSLKPDRVTLMGILVACCYAGFVNEGIQIFSSMEKAHGVNPGNEHYACIIELLCRVGMINEAKDIADKIPFEPSSHIWEPILCASLDLGDTRLAETVAKTMLESEPKSSFPYLVLIKIY 561
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP257_ARATH (Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidopsis thaliana GN=PCMP-A6 PE=2 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 4.904e-26 Identity = 64/157 (40.76%), Postives = 90/157 (57.32%), Query Frame = 3 Query: 45 SVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNN-KIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSH 512 + LID+Y+KCG+L AR VFD+M K A WNSMI + G HG +++L+LF EM ++PD +TF+ ++SAC + G V+ G+ YF M + YGI EH ACM+ L +A + KA + SM PD + + G G E E S H Sbjct: 290 TALIDMYSKCGSLQDARKVFDVMQGKSLATWNSMITSLGVHGCGEEALSLFEEMEEEASVEPDAITFVGVLSACANTGNVKDGLRYFTRMIQVYGISPIREHNACMIQLLEQALEVEKASNLVESMDSDPD---FNSSFGNEYTDGMNETNETPSQH 443
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP153_ARATH (Pentatricopeptide repeat-containing protein At2g15690 OS=Arabidopsis thaliana GN=PCMP-H66 PE=2 SV=2) HSP 1 Score: 116.701 bits (291), Expect = 8.365e-26 Identity = 55/177 (31.07%), Postives = 95/177 (53.67%), Query Frame = 3 Query: 9 IKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNS 539 ++ R D +++I ++ +C ++ A+ VFD M K +W+ M+ AY +G D+L LF EM + +KP+ TFL + AC G +E +F M E+GI + EHY ++ + G+ G L +A + I +PF P A W + R+HG+++L + + D+DP + Sbjct: 263 LQSKFRGDPKLNNMVISMFGECSSITDAKRVFDHMVDKDMDSWHLMMCAYSDNGMGDDALHLFEEMTKHGLKPNEETFLTVFLACATVGGIEEAFLHFDSMKNEHGISPKTEHYLGVLGVLGKCGHLVEAEQYIRDLPFEPTADFWEAMRNYARLHGDIDLEDYMEELMVDVDPSKA 439
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP448_ARATH (Pentatricopeptide repeat-containing protein At5g66500, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E38 PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.427e-25 Identity = 65/192 (33.85%), Postives = 101/192 (52.60%), Query Frame = 3 Query: 27 SDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLN--NKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPD----AGVWGTLLGACRVHGNVELAEVASSHLF-DLDPQNSGYYVLLSNIHADAG 581 SD+ + L+D+Y KCG + ART+F + K +W SMI AY +G +L +F EM + + P+ VTFL +ISAC HAG V+ G F M E+Y + EHY C +D+ +AG + + M + +W +L AC ++ ++ E + L + P+N+ YVL+SN +A G Sbjct: 314 SDSKLCNGLMDMYGKCGQIVQARTIFRAIPSKSVVSWTSMIDAYAVNGDGVKALEIFREMCEEGSGVLPNSVTFLVVISACAHAGLVKEGKECFGMMKEKYRLVPGTEHYVCFIDILSKAGETEEIWRLVERMMENDNQSIPCAIWVAVLSACSLNMDLTRGEYVARRLMEETGPENASIYVLVSNFYAAMG 505
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP170_ARATH (Pentatricopeptide repeat-containing protein At2g25580 OS=Arabidopsis thaliana GN=PCMP-H75 PE=2 SV=2) HSP 1 Score: 111.309 bits (277), Expect = 3.515e-24 Identity = 56/167 (33.53%), Postives = 90/167 (53.89%), Query Frame = 3 Query: 30 DNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDP 530 D + VL+++Y+ CG + A +VF+ M K W +I + +G +D++ +F PD F I ACG G V+ G+ +F M+ +YGI +E Y +V+++ G L++ALE + MP P+ VW TL+ RVHGN+EL + + + LDP Sbjct: 288 DLSSNHVLLEMYSNCGLANEAASVFEKMSEKNLETWCIIIRCFAKNGFGEDAIDMFSRFKEEGNIPDGQLFRGIFYACGMLGDVDEGLLHFESMSRDYGIAPSIEDYVSLVEMYALPGFLDEALEFVERMPMEPNVDVWETLMNLSRVHGNLELGDYCAEVVEFLDP 454
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP423_ARATH (Putative pentatricopeptide repeat-containing protein At5g47460 OS=Arabidopsis thaliana GN=PCMP-E103 PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 7.830e-24 Identity = 59/183 (32.24%), Postives = 98/183 (53.55%), Query Frame = 3 Query: 36 IAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNK-IKPDHVTFLAIISACGHAG-QVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDL-DPQNSGY-YVLLSNIHA 572 + S LID+Y+KCG L A +F M RK WN MI+ Y +G +++ LF+++ + +KPD TFL +++ C H +E + YF M EY I +EH ++ G+ G + +A + I F D W LLGAC +++ A+ ++ + +L D Y Y+++SN++A Sbjct: 356 VVASALIDMYSKCGMLKHAELMFWTMPRKNLIVWNEMISGYARNGDSIEAIKLFNQLKQERFLKPDRFTFLNLLAVCSHCEVPMEVMLGYFEMMINEYRIKPSVEHCCSLIRAMGQRGEVWQAKQVIQEFGFGYDGVAWRALLGACSARKDLKAAKTVAAKMIELGDADKDEYLYIVMSNLYA 538 The following BLAST results are available for this feature:
BLAST of CX288721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 200
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288721 ID=CX288721; Name=CX288721; organism=Citrus clementina; type=EST; length=581bpback to top |