CX288721

Overview
NameCX288721
Unique NameCX288721
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length581
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP251_ARATH (Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.191e-42
Identity = 77/179 (43.02%), Postives = 114/179 (63.69%), Query Frame = 3
Query:   45 SVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581
            S L+D+Y+KCGN+  AR +FD M    E +W ++I  +  HGH  ++++LF EM    +KP+ V F+A+++AC H G V+    YF+ MT+ YG+   +EHYA + DL GRAG+L +A   I+ M   P   VW TLL +C VH N+ELAE  +  +F +D +N G YVL+ N++A  G
Sbjct:  382 SALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNG 560          

HSP 2 Score: 75.8702 bits (185), Expect = 1.636e-13
Identity = 41/159 (25.79%), Postives = 77/159 (48.43%), Query Frame = 3
Query:    6 MIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGN 482
            +I+    SD    S L+D+YAK   ++ +  VF  +  +   +WNS++A Y  +G   ++L LF +M+  K+KP  V F ++I AC H   +  G    H      G  + +   + +VD++ + G +  A +  + M    +   W  ++    +HG+
Sbjct:  268 VIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLG-KQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVS-WTAIIMGHALHGH 424          
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP108_ARATH (Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.862e-42
Identity = 81/177 (45.76%), Postives = 114/177 (64.41%), Query Frame = 3
Query:   51 LIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581
            L+ LY KCG++D +  +F+ M  +   +W +M++AY   G   +++ LF +M+ + +KPD VT   +ISAC  AG VE G  YF  MT EYGI   + HY+CM+DLF R+GRL +A+  IN MPF PDA  W TLL ACR  GN+E+ + A+  L +LDP +   Y LLS+I+A  G
Sbjct:  412 LVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKG 588          

HSP 2 Score: 83.5741 bits (205), Expect = 7.848e-16
Identity = 51/159 (32.08%), Postives = 78/159 (49.06%), Query Frame = 3
Query:   45 SVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFD 521
            S LID+Y KC  L +A+TVFD M +K   +W +M+  YG  G  ++++ +F +M  + I PDH T    ISAC +   +E G   FH      G+   +     +V L+G+ G ++ +    N M    DA  W  ++ A    G      V +  LFD
Sbjct:  309 SALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEG-SQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMN-VRDAVSWTAMVSAYAQFGRA----VETIQLFD 461          
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP449_ARATH (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 3.738e-42
Identity = 81/187 (43.32%), Postives = 116/187 (62.03%), Query Frame = 3
Query:   12 KDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHA 572
            K   R D++   VLID+YAKCG ++ A  VF  + +K   AW ++I+ Y  HGH +++++ F EM    IKP+ +TF A+++AC + G VE G   F+ M  +Y +   +EHY C+VDL GRAG L++A   I  MP  P+A +WG LL ACR+H N+EL E     L  +DP + G YV  +NIHA
Sbjct:  275 KTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHA 461          

HSP 2 Score: 79.337 bits (194), Expect = 1.480e-14
Identity = 43/151 (28.48%), Postives = 75/151 (49.67%), Query Frame = 3
Query:   30 DNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGN 482
            D+++ + +I  Y K G +D A T+F  M  K   +W +MI+ Y      K++L LFHEM N+ ++PD+V+    +SAC   G +E G  + H    +  I         ++D++ + G + +ALE   ++        W  L+     HG+
Sbjct:  180 DDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQG-KWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIK-KKSVQAWTALISGYAYHGH 328          
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP436_ARATH (Pentatricopeptide repeat-containing protein At5g59600 OS=Arabidopsis thaliana GN=PCMP-E1 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 3.738e-42
Identity = 85/179 (47.49%), Postives = 116/179 (64.80%), Query Frame = 3
Query:   45 SVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581
            S L+D+Y KCG +  A  +F    +K    +NSMI  Y  HG    ++ LF +M     K DH+TF AI++AC HAG  + G + F  M  +Y I  R+EHYACMVDL GRAG+L +A E I +M   PD  VWG LL ACR HGN+ELA +A+ HL +L+P+NSG  +LL++++A+AG
Sbjct:  327 SALLDMYGKCGFISEAMILFRKTPKKTTVTFNSMIFCYANHGLADKAVELFDQMEATGEKLDHLTFTAILTACSHAGLTDLGQNLFLLMQNKYRIVPRLEHYACMVDLLGRAGKLVEAYEMIKAMRMEPDLFVWGALLAACRNHGNMELARIAAKHLAELEPENSGNGLLLTSLYANAG 505          
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP405_ARATH (Pentatricopeptide repeat-containing protein At5g39350 OS=Arabidopsis thaliana GN=PCMP-E16 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 3.738e-42
Identity = 80/185 (43.24%), Postives = 122/185 (65.95%), Query Frame = 3
Query:   39 AESVLIDLYAKCGNLDFARTVFDMMXRKQEAA----WNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581
            A + L+ +Y+KCG L+ A  +F+ +  K ++     W ++I+ YG HG   ++L +F EM+ + + P+ +TF + ++AC H+G VE G+  F  M E Y   AR  HY C+VDL GRAGRL++A   I ++PF P + VWG LL AC  H NV+L E+A++ LF+L+P+N+G YVLL+NI+A  G
Sbjct:  457 AATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTLFRFMLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTIPFEPTSTVWGALLAACVTHENVQLGEMAANKLFELEPENTGNYVLLANIYAALG 641          

HSP 2 Score: 85.5001 bits (210), Expect = 2.065e-16
Identity = 44/155 (28.39%), Postives = 83/155 (53.55%), Query Frame = 3
Query:   30 DNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELA 494
            D   ++ L+ +Y   G ++ AR VFD+M  +   +WN+MI+ Y  +G++ D+L +F  M+N  +  DH T ++++  CGH   +E G    H + EE  +  ++E    +V+++ + GR+++A    + M    D   W  ++      G+VE A
Sbjct:  151 DKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMG-RNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFDRME-RRDVITWTCMINGYTEDGDVENA 303          
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP147_ARATH (Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 3.738e-42
Identity = 79/183 (43.17%), Postives = 121/183 (66.12%), Query Frame = 3
Query:   30 DNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADA 578
            D I  + L+D+Y KCG+L+ A  VF+ M  +    W++MI+    +G+ +++L LF  M ++  KP+++T + ++ AC HAG +E G +YF  M + YGI    EHY CM+DL G+AG+L+ A++ +N M   PDA  W TLLGACRV  N+ LAE A+  +  LDP+++G Y LLSNI+A++
Sbjct:  292 DLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANS 474          
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP140_ARATH (Pentatricopeptide repeat-containing protein At2g01510, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 3.738e-42
Identity = 82/192 (42.71%), Postives = 119/192 (61.98%), Query Frame = 3
Query:   12 KDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTE--EYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581
            K+    + I E+  +D++ KCGN + AR +F+ M ++   +W++MI  Y  +G  +++L LF  M N  ++P++VTFL ++SAC HAG V  G  YF  M +  +  +  R EHYACMVDL GR+G L +A E I  MP  PD G+WG LLGAC VH ++ L +  +  L +  P    Y+VLLSNI+A AG
Sbjct:  238 KEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSNIYAAAG 429          
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP215_ARATH (Pentatricopeptide repeat-containing protein At3g05340 OS=Arabidopsis thaliana GN=PCMP-E83 PE=2 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 4.881e-42
Identity = 79/193 (40.93%), Postives = 120/193 (62.18%), Query Frame = 3
Query:    3 LMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581
            L+IK     +    + LI++Y+KCG+L  ++TVF  M ++   +WNSMIAA+  HGH   +L L+ EM   ++KP  VTFL+++ AC H G ++ G    + M E +GI  R EHY C++D+ GRAG L +A   I+S+P  PD  +W  LLGAC  HG+ E+ E A+  LF   P +S  ++L++NI++  G
Sbjct:  382 LVIKRKFSGNTFVNNGLINMYSKCGDLTDSQTVFRRMPKRNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVGLIDKGRELLNEMKEVHGIEPRTEHYTCIIDMLGRAGLLKEAKSFIDSLPLKPDCKIWQALLGACSFHGDTEVGEYAAEQLFQTAPDSSSAHILIANIYSSRG 574          
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP167_ARATH (Pentatricopeptide repeat-containing protein At2g21090 OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 4.881e-42
Identity = 80/193 (41.45%), Postives = 122/193 (63.21%), Query Frame = 3
Query:    6 MIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAA-WNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581
            MI+ + R + I  S LID+Y+K G+L+ +  VF +   K +   WN+MI+A   HG    +L +  +M+  +++P+  T + I++AC H+G VE G+ +F  MT ++GI    EHYAC++DL GRAG   + +  I  MPF PD  +W  +LG CR+HGN EL + A+  L  LDP++S  Y+LLS+I+AD G
Sbjct:  337 MIRTNVRPNAIVISSLIDMYSKSGSLEASERVFRICDDKHDCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTLVVILNACSHSGLVEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEMPFEPDKHIWNAILGVCRIHGNEELGKKAADELIKLDPESSAPYILLSSIYADHG 529          
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP403_ARATH (Putative pentatricopeptide repeat-containing protein At5g37570 OS=Arabidopsis thaliana GN=PCMP-E37 PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 6.375e-42
Identity = 80/182 (43.96%), Postives = 117/182 (64.29%), Query Frame = 3
Query:   27 SDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHA 572
            S +     LID+ AKCG++D A  +F+ M ++   ++ SM+     HG   +++ LF +M++  I PD V F  I+  CG +  VE G+ YF  M ++Y I A  +HY+C+V+L  R G+L +A E I SMPF   A  WG+LLG C +HGN E+AEV + HLF+L+PQ++G YVLLSNI+A
Sbjct:  338 SSHYVVPALIDMNAKCGHMDRAAKLFEEMPQRDLVSYCSMMEGMAIHGCGSEAIRLFEKMVDEGIVPDEVAFTVILKVCGQSRLVEEGLRYFELMRKKYSILASPDHYSCIVNLLSRTGKLKEAYELIKSMPFEAHASAWGSLLGGCSLHGNTEIAEVVARHLFELEPQSAGSYVLLSNIYA 519          
The following BLAST results are available for this feature:
BLAST of CX288721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
PP251_ARATH2.191e-4243.02Putative pentatricopeptide repeat-containing prote... [more]
PP108_ARATH2.862e-4245.76Putative pentatricopeptide repeat-containing prote... [more]
PP449_ARATH3.738e-4243.32Pentatricopeptide repeat-containing protein At5g66... [more]
PP436_ARATH3.738e-4247.49Pentatricopeptide repeat-containing protein At5g59... [more]
PP405_ARATH3.738e-4243.24Pentatricopeptide repeat-containing protein At5g39... [more]
PP147_ARATH3.738e-4243.17Pentatricopeptide repeat-containing protein At2g03... [more]
PP140_ARATH3.738e-4242.71Pentatricopeptide repeat-containing protein At2g01... [more]
PP215_ARATH4.881e-4240.93Pentatricopeptide repeat-containing protein At3g05... [more]
PP167_ARATH4.881e-4241.45Pentatricopeptide repeat-containing protein At2g21... [more]
PP403_ARATH6.375e-4243.96Putative pentatricopeptide repeat-containing prote... [more]

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Properties
Property NameValue
Genbank descriptionC02003F06SK IF1 Citrus clementina cDNA clone C02003F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288721 ID=CX288721; Name=CX288721; organism=Citrus clementina; type=EST; length=581bp
GTTTGATGATAAAAGATTCCTGCCGCTCTGATAATATTGCTGAGAGTGTA
CTGATAGACTTGTATGCTAAATGTGGAAACTTGGATTTTGCTCGTACTGT
TTTTGACATGATGCANAGGAAGCAGGAAGCTGCATGGAATAGCATGATTG
CTGCTTATGGATGCCACGGCCATCTNAAGGACTCTCTTGCTCTTTTCCAT
GAAATGTTAAATAATAAAATCAAGCCAGATCATGTCACGTTTCTCGCTAT
AATATCTGCTTGTGGCCATGCTGGCCAAGTTGAAGCTGGAATTCATTACT
TCCATTGTATGACTGAAGAATATGGAATCCCAGCTCGCATGGAGCACTAT
GCATGCATGGTAGATTTGTTTGGGCGTGCTGGTCGTTTGAATAAGGCATT
AGAGACCATAAACAGTATGCCATTTGCACCTGATGCAGGTGTCTGGGGAA
CGTTGCTGGGAGCATGTCGGGTCCATGGCAATGTTGAGCTAGCTGAAGTG
GCTTCAAGTCATCTGTTTGATTTAGACCCACAAAACTCAGGCTACTATGT
GCTGCTTTCAAATATACATGCTGATGCTGGA
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