CX288721
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP197_ARATH (Pentatricopeptide repeat-containing protein At2g40720 OS=Arabidopsis thaliana GN=PCMP-E26 PE=2 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 5.967e-40 Identity = 83/185 (44.86%), Postives = 109/185 (58.92%), Query Frame = 3 Query: 27 SDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 SD ++ LID+Y KCG +A +F M K WN MI YG HG +L+LF EM PD VTFL++ISAC H+G VE G + F M ++YGI MEHYA MVDL GRAG L +A I +MP D+ +W LL A R H NVEL +++ L ++P+ YV L N++ +AG Sbjct: 610 SDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIYGYGSHGDCITALSLFDEMKKAGESPDDVTFLSLISACNHSGFVEEGKNIFEFMKQDYGIEPNMEHYANMVDLLGRAGLLEEAYSFIKAMPIEADSSIWLCLLSASRTHHNVELGILSAEKLLRMEPERGSTYVQLINLYMEAG 794
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP146_ARATH (Pentatricopeptide repeat-containing protein At2g03380, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E47 PE=2 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 7.793e-40 Identity = 76/179 (42.46%), Postives = 103/179 (57.54%), Query Frame = 3 Query: 45 SVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 + L+D YAKCG+ AR +FD + K W++MI YG G SL LF EML + KP+ TF +I+SACGH G V G YF M ++Y +HY CMVD+ RAG L +AL+ I MP PD +G L C +H +L E+ + DL P ++ YYVL+SN++A G Sbjct: 484 TALLDFYAKCGDPQSARLIFDTIEEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILSACGHTGMVNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCFGAFLHGCGMHSRFDLGEIVIKKMLDLHPDDASYYVLVSNLYASDG 662 HSP 2 Score: 66.6254 bits (161), Expect = 9.927e-11 Identity = 41/155 (26.45%), Postives = 72/155 (46.45%), Query Frame = 3 Query: 30 DNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELA 494 DN+ + L+D+YAKCG + A VF+ + + W SMIA Y + ++ L LF+ M N + + T+ +I AC + G +FH + GI ++D++ + G ++ A N D +W ++ +G+V A Sbjct: 175 DNVVLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQG-KWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHV-DLVMWTAMIVGYTHNGSVNEA 327 HSP 3 Score: 66.6254 bits (161), Expect = 9.927e-11 Identity = 46/175 (26.29%), Postives = 81/175 (46.29%), Query Frame = 3 Query: 3 LMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHY--ACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFD 521 L IK N+A + L+ +YAKC A+ VF+M K AWNS+I+ + +G + ++L LFH M + + P+ VT ++ SAC G + G H + + G A + ++D + + G A +++ + W ++G G+ + S LF+ Sbjct: 368 LSIKVGIWDTNVANA-LVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVG-SSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFDTIE-EKNTITWSAMIGGYGKQGDT----IGSLELFE 535
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PPR15_ARATH (Pentatricopeptide repeat-containing protein At1g06145 OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2) HSP 1 Score: 162.925 bits (411), Expect = 1.018e-39 Identity = 75/177 (42.37%), Postives = 116/177 (65.54%), Query Frame = 3 Query: 45 SVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHAD 575 S L+D+Y+KCG+L+ A VF + +K WNS+I HG +++L +F +M +KP+ VTF+++ +AC HAG V+ G + M ++Y I + +EHY MV LF +AG + +ALE I +M F P+A +WG LL CR+H N+ +AE+A + L L+P NSGYY LL +++A+ Sbjct: 326 SALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGALLDGCRIHKNLVIAEIAFNKLMVLEPMNSGYYFLLVSMYAE 502 HSP 2 Score: 78.1814 bits (191), Expect = 3.297e-14 Identity = 43/143 (30.07%), Postives = 75/143 (52.45%), Query Frame = 3 Query: 51 LIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHG 479 LI+ Y GNL+ A ++F+ M K +W +MI Y + ++++A+F++M+ I PD VT +ISAC H G +E G H T + G + + +VD++ + G L +AL ++P + W +++ HG Sbjct: 227 LINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIG-KEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLP-KKNLFCWNSIIEGLAAHG 367
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP169_ARATH (Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 1.329e-39 Identity = 74/176 (42.05%), Postives = 110/176 (62.50%), Query Frame = 3 Query: 51 LIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADA 578 L+D+YAKCGN+ A +VF + + + ++I HG +++ F+EM++ I PD +TF+ ++SAC H G ++ G YF M + + +++HY+ MVDL GRAG L +A + SMP DA VWG LL CR+HGNVEL E A+ L +LDP +SG YVLL ++ +A Sbjct: 430 LVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDGMYGEA 605 HSP 2 Score: 87.0409 bits (214), Expect = 7.098e-17 Identity = 50/177 (28.25%), Postives = 90/177 (50.85%), Query Frame = 3 Query: 36 IAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFD--LDPQNSGYYVLLS 560 ++ + +I YA+CG LD +R +FD M K WN+MI +D+LALF EM + KPD +T + +SAC G ++ GI + H E+Y + + +VD++ + G +++AL + + ++ + ++G +HG+ A + + D + P + LLS Sbjct: 324 VSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGI-WIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQ-TRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLS 498
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP121_ARATH (Pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E69 PE=2 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 1.329e-39 Identity = 77/187 (41.18%), Postives = 113/187 (60.43%), Query Frame = 3 Query: 21 CRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 C ++ S L+ +Y+K G++D F + AW ++IA+Y HG ++L +++ M KPD VTF+ ++SAC H G VE + + M ++YGI HY CMVD GR+GRL +A IN+M PDA VWGTLL AC++HG VEL +VA+ +L+P ++G Y+ LSNI A+ G Sbjct: 684 CTEPSVGSS-LLTMYSKFGSIDDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSACSHGGLVEESYFHLNSMVKDYGIEPENRHYVCMVDALGRSGRLREAESFINNMHIKPDALVWGTLLAACKIHGEVELGKVAAKKAIELEPSDAGAYISLSNILAEVG 869 HSP 2 Score: 73.559 bits (179), Expect = 8.121e-13 Identity = 40/138 (28.99%), Postives = 71/138 (51.45%), Query Frame = 3 Query: 9 IKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMP 422 +K D S L LY+KCG+L+ + +F + K A W SMI+ + +G+L++++ LF EML++ PD T A+++ C + G H T GI M+ + +V+++ + G L A + + +P Sbjct: 477 LKSGLVLDLTVGSSLFTLYSKCGSLEESYKLFQGIPFKDNACWASMISGFNEYGYLREAIGLFSEMLDDGTSPDESTLAAVLTVCSSHPSLPRG-KEIHGYTLRAGIDKGMDLGSALVNMYSKCGSLKLARQVYDRLP 613
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP378_ARATH (Pentatricopeptide repeat-containing protein At5g13270, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H90 PE=2 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 1.736e-39 Identity = 77/191 (40.31%), Postives = 116/191 (60.73%), Query Frame = 3 Query: 9 IKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 IK S ES LI +Y+KCG LD A VF+ M AW + I+ + +G+ ++L LF +M++ +KP+ VTF+A+++AC HAG VE G H M +Y + ++HY CM+D++ R+G L++AL+ + +MPF PDA W L C H N+EL E+A L LDP+++ YVL N++ AG Sbjct: 414 IKRSLIGSQYGESALITMYSKCGCLDDANEVFESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKHCLDTMLRKYNVAPTIDHYDCMIDIYARSGLLDEALKFMKNMPFEPDAMSWKCFLSGCWTHKNLELGEIAGEELRQLDPEDTAGYVLPFNLYTWAG 604
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP345_ARATH (Pentatricopeptide repeat-containing protein At4g32430, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 1.736e-39 Identity = 74/190 (38.95%), Postives = 118/190 (62.11%), Query Frame = 3 Query: 6 MIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHAD 575 ++K S + S L+D+YAK GN+D + VF+ M +K + W S+I+AY HG + + LFH+M+ + PD VTFL++++AC G V+ G F+ M E Y + EHY+CMVD+ GRAGRL +A E ++ +P P + ++LG+CR+HGNV++ + ++ P+ SG YV + NI+A+ Sbjct: 500 LLKLGLNSCPVVSSALLDMYAKRGNIDESEKVFNEMSQKNQFVWTSIISAYSSHGDFETVMNLFHKMIKENVAPDLVTFLSVLTACNRKGMVDKGYEIFNMMIEVYNLEPSHEHYSCMVDMLGRAGRLKEAEELMSEVPGGPGESMLQSMLGSCRLHGNVKMGAKVAELAMEMKPELSGSYVQMYNIYAE 689
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP114_ARATH (Pentatricopeptide repeat-containing protein At1g71420 OS=Arabidopsis thaliana GN=PCMP-H70 PE=2 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 1.736e-39 Identity = 83/193 (43.01%), Postives = 115/193 (59.59%), Query Frame = 3 Query: 6 MIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDL-DPQNSGYYVLLSNIHADAG 581 +IK +D + + LI YAKCG+LD VFD M + +WNSM+ AY HG + L +F +M I PD TF+A++SAC HAG+VE G+ F M E+ ++ HYAC++D+ RA R +A E I MP PDA VW LLG+CR HGN L ++A+ L +L +P NS Y+ +SNI+ G Sbjct: 395 VIKGGFLADTVLNNSLIHAYAKCGSLDLCMRVFDDMDSRDVVSWNSMLKAYSLHGQVDSILPVFQKM---DINPDSATFIALLSACSHAGRVEEGLRIFRSMFEKPETLPQLNHYACVIDMLSRAERFAEAEEVIKQMPMDPDAVVWIALLGSCRKHGNTRLGKLAADKLKELVEPTNSMSYIQMSNIYNAEG 584
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP128_ARATH (Pentatricopeptide repeat-containing protein At1g77170 OS=Arabidopsis thaliana GN=PCMP-E21 PE=2 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 2.268e-39 Identity = 73/193 (37.82%), Postives = 117/193 (60.62%), Query Frame = 3 Query: 3 LMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 L K +SD + + LID+Y KCG +D A +F+ M ++ +W+SMI Y +G+ ++L F +M ++P+ +TF+ ++SAC H G VE G YF M E+ + + HY C+VDL R G+L +A + + MP P+ VWG L+G C G+VE+AE + ++ +L+P N G YV+L+N++A G Sbjct: 245 LQAKTEEKSDIMMLNSLIDMYGKCGRMDLASHIFEEMRQRNVVSWSSMIVGYAANGNTLEALECFRQMREFGVRPNKITFVGVLSACVHGGLVEEGKTYFAMMKSEFELEPGLSHYGCIVDLLSRDGQLKEAKKVVEEMPMKPNVMVWGCLMGGCEKFGDVEMAEWVAPYMVELEPWNDGVYVVLANVYALRG 437 HSP 2 Score: 66.6254 bits (161), Expect = 9.927e-11 Identity = 38/155 (24.52%), Postives = 73/155 (47.10%), Query Frame = 3 Query: 30 DNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCM----TEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGN 482 D ES I LY K G + AR VFD ++ +WN++I G +++ +F +M + ++PD T +++ ++CG G + C+ TEE + + ++D++G+ GR++ A M + W +++ +GN Sbjct: 151 DEFCESGFITLYCKAGEFENARKVFDENPERKLGSWNAIIGGLNHAGRANEAVEMFVDMKRSGLEPDDFTMVSVTASCGGLGDLSLAFQLHKCVLQAKTEE---KSDIMMLNSLIDMYGKCGRMDLASHIFEEMR-QRNVVSWSSMIVGYAANGN 301
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP353_ARATH (Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana GN=PCMP-H5 PE=2 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 2.961e-39 Identity = 72/183 (39.34%), Postives = 114/183 (62.30%), Query Frame = 3 Query: 33 NIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 + A S L+D+Y KCGN++ A+ V D + +W S+I +G ++L F +L + KPDHVTF+ ++SAC HAG VE G+ +F+ +TE++ + +HY C+VDL R+GR + I+ MP P +W ++LG C +GN++LAE A+ LF ++P+N YV ++NI+A AG Sbjct: 354 SFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAG 536 HSP 2 Score: 84.3445 bits (207), Expect = 4.601e-16 Identity = 46/163 (28.22%), Postives = 79/163 (48.47%), Query Frame = 3 Query: 6 MIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELA 494 +++ SD + S L+D+Y KCG +D AR +FD + K +W SMI Y ++ +LF E++ + +P+ TF +++AC E G MT G + +VD++ + G + A ++ P PD W +L+G C +G + A Sbjct: 244 IVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMT-RVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCP-KPDLVSWTSLIGGCAQNGQPDEA 404 The following BLAST results are available for this feature:
BLAST of CX288721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 200
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288721 ID=CX288721; Name=CX288721; organism=Citrus clementina; type=EST; length=581bpback to top |