CX288722

Overview
NameCX288722
Unique NameCX288722
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig921 contig Ccv1_Contig921:22..579. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288722 vs. ExPASy Swiss-Prot
Match: ACCO2_MALDO (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Malus domestica GN=ACO2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.134e-11
Identity = 45/144 (31.25%), Postives = 69/144 (47.92%), Query Frame = 3
Query:  123 ISKFPVIDMQXXXXXXXXXXXXANLDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYWQYPGEVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNLISRMAKVL 554
            ++ FPV+DM               ++ AC  WGFF+LVNHG+S  L+D V+K  ++ +  +ME++ K       V   G   V SE   LDW   FF+  LP         P L    R T++ ++ E+  LA  L+  + + L
Sbjct:    1 MATFPVVDMDLINGEERAATLE-KINDACENWGFFELVNHGISTELLDTVEKMNKDHYKKTMEQRFKEM-----VAAKGLEAVQSEIHYLDWESTFFLRHLP--SSNISEIPDLEEDYRKTMKEFAVELEKLAEKLLDLLCENL 136          
BLAST of CX288722 vs. ExPASy Swiss-Prot
Match: FLS_MALDO (Flavonol synthase/flavanone 3-hydroxylase OS=Malus domestica GN=FLS PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.093e-11
Identity = 47/185 (25.41%), Postives = 85/185 (45.95%), Query Frame = 3
Query:   21 VPSVQELAENPMVAVPPRYIRPEQDAPVISD-NTLISKFPVIDMQXXXXXXXXXXXXANLDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYWQYP--GEVEGFG----QAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNLISRMAKVL 554
            V SV+   E+    +P  +IR E + P I+  +  + + P+ID                +  A   WG +Q+VNH +   ++ K++   +EFF L  EEK+ Y + P    +EG+G    +     +  +  W D  F    P  +     +PK PPS R+  E Y+  ++    N++ ++ ++L
Sbjct:    3 VESVERERESNEGTIPAEFIRSENEQPGITTVHGKVLEVPIIDFSDPDEEKLI----VQITEASSNWGMYQIVNHDIPSEVISKLQAVGKEFFELPQEEKEAYAKPPDSASIEGYGTKLFKEISEGDTTKKGWVDNLFNKIWPPSVVNYQFWPKNPPSYREANEEYAKHLH----NVVEKLFRLL 179          
BLAST of CX288722 vs. ExPASy Swiss-Prot
Match: FLS_PETCR (Flavonol synthase/flavanone 3-hydroxylase OS=Petroselinum crispum GN=FLS PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.981e-11
Identity = 48/168 (28.57%), Postives = 75/168 (44.64%), Query Frame = 3
Query:   54 MVAVPPRYIRPEQDAPVISD-NTLISKFPVIDMQXXXXXXXXXXXXANLDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKK---KYWQYPGEVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNLISRMA 545
            M  +P  YIR E + P ++    ++ + PVID+               +  A REWG FQ+VNHG+    + K++K  +EFF L  +EK+   K   Y G VEG+G         +  W D  F    P      + +P  PP  R+  E Y+  +  +   L   ++
Sbjct:   16 MDTIPSEYIRSESEQPAVTTMQGVVLQVPVIDLGSSNNTEENLVEL--IAEASREWGIFQVVNHGIPDDAIAKLQKVGKEFFELPQQEKEVIAKPEGYQG-VEGYGTKLQKELGGKKGWVDHLFHIIWPKSAVNYNFWPNNPPLYREANEEYAVALRGVVDKLFEALS 180          
BLAST of CX288722 vs. ExPASy Swiss-Prot
Match: ACCO_ACTDE (1-aminocyclopropane-1-carboxylate oxidase OS=Actinidia deliciosa GN=ACO PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 46/139 (33.09%), Postives = 66/139 (47.48%), Query Frame = 3
Query:  132 FPVIDMQXXXXXXXXXXXXANLDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYWQYPGEVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNLISRMAK 548
            FPVIDM+               D AC  WGFF+LVNHG+S  L+D V++  +E +N  ME++ K       V   G   V SE   LDW   FF+  LPV        P L    R  ++ ++ ++  LA  L+  + +
Sbjct:    4 FPVIDMEKLNGEERAPTMEKIKD-ACENWGFFELVNHGISHELMDTVERLTKEHYNKCMEQRFKEM-----VATKGLEAVQSEINDLDWESTFFLRHLPV--SNISEIPDLEQDHRKAMKEFAEKLEKLAEQLLDLLCE 134          
The following BLAST results are available for this feature:
BLAST of CX288722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
ACCO2_MALDO3.134e-1131.251-aminocyclopropane-1-carboxylate oxidase 2 OS=Mal... [more]
FLS_MALDO4.093e-1125.41Flavonol synthase/flavanone 3-hydroxylase OS=Malus... [more]
FLS_PETCR6.981e-1128.57Flavonol synthase/flavanone 3-hydroxylase OS=Petro... [more]
ACCO_ACTDE9.118e-1133.091-aminocyclopropane-1-carboxylate oxidase OS=Actin... [more]

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Properties
Property NameValue
Genbank descriptionC02003F07SK IF1 Citrus clementina cDNA clone C02003F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288722 ID=CX288722; Name=CX288722; organism=Citrus clementina; type=EST; length=558bp
AGTACGGAGGTTCTTTGCTTGTTCCTTCTGTTCAAGAATTAGCCGAGAAT
CCTATGGTAGCTGTTCCTCCCAGATACATACGTCCTGAGCAAGATGCACC
TGTCATTTCTGACAATACTTTGATCTCAAAGTTTCCAGTTATTGACATGC
AGAGCTTGCTTTCTGAAGAATCAGTGGATTCTGAATTGGCCAACCTTGAC
TTCGCTTGCAGAGAATGGGGTTTTTTCCAGTTGGTCAATCATGGAGTGAG
TTTGGCGTTAGTAGACAAAGTGAAGAAAGAGATACAGGAATTCTTCAATC
TCAGCATGGAAGAGAAGAAAAAATATTGGCAGTATCCCGGAGAAGTAGAA
GGATTTGGACAAGCCTTTGTTGTATCTGAGGAACAAAGGCTTGACTGGGG
AGACCTGTTCTTCATGACCACTCTTCCTGTCCATCTGAGGAAACCCCACT
TGTTTCCTAAGCTCCCTCCTTCTCTCAGGGATACGTTGGAAGTTTACTCA
ACGGAAGTAAATGCTCTAGCGATGAATTTAATATCGAGAATGGCAAAAGT
CTTACATA
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