CX288730

Overview
NameCX288730
Unique NameCX288730
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288730 vs. ExPASy Swiss-Prot
Match: BEE2_ARATH (Transcription factor BEE 2 OS=Arabidopsis thaliana GN=BEE2 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.609e-30
Identity = 70/115 (60.87%), Postives = 83/115 (72.17%), Query Frame = 2
Query:   23 EAEPSSVKPAEQNSQPP--EPPKQDYIHVRARRGQATDSHSLAXRARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFPPKDF 361
            E EPS    +  ++     E  K DYIHVRARRG+ATD HSLA RARREKIS++MK LQD+VPGCNKV GKA +LDEIINY+QSLQ+QVEFLSMKL  +N  +   I+    K F
Sbjct:  113 ETEPSMKGKSNMSNTETSSEIQKPDYIHVRARRGEATDRHSLAERARREKISKKMKCLQDIVPGCNKVTGKAGMLDEIINYVQSLQQQVEFLSMKLSVINPELECHIDDLSAKQF 227          
BLAST of CX288730 vs. ExPASy Swiss-Prot
Match: BH137_ARATH (Transcription factor bHLH137 OS=Arabidopsis thaliana GN=BHLH137 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.101e-30
Identity = 68/105 (64.76%), Postives = 84/105 (80.00%), Query Frame = 2
Query:    2 DNHHSKAEAEPSSVKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAXRARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVN 316
            ++++SK   E    K  ++ S+  E P  DYIHVRARRGQATDSHSLA R RREKISERM+ LQ+LVPGC+KV GKAL+LDEIINY+Q+LQ QVEFLSMKL +++
Sbjct:  105 NSNNSKEGVEGRKSKKQKRGSK--EEPPTDYIHVRARRGQATDSHSLAERVRREKISERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQTQVEFLSMKLTSIS 207          
BLAST of CX288730 vs. ExPASy Swiss-Prot
Match: BH048_ARATH (Transcription factor bHLH48 OS=Arabidopsis thaliana GN=BHLH48 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.323e-29
Identity = 64/104 (61.54%), Postives = 80/104 (76.92%), Query Frame = 2
Query:   17 KAEAEPSSVKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAXRARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMN 328
            + E E       ++N    E  K  Y+HVRARRGQATD+HSLA RARREKI+ RMK+LQ+LVPGC+K+ G ALVLDEIIN++Q+LQRQVE LSM+L AVN R++
Sbjct:  157 RKEREKKVKSSTKKNKSSVESDKLPYVHVRARRGQATDNHSLAERARREKINARMKLLQELVPGCDKIQGTALVLDEIINHVQTLQRQVEMLSMRLAAVNPRID 260          
BLAST of CX288730 vs. ExPASy Swiss-Prot
Match: BEE3_ARATH (Transcription factor BEE 3 OS=Arabidopsis thaliana GN=BEE3 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.193e-25
Identity = 56/95 (58.95%), Postives = 74/95 (77.89%), Query Frame = 2
Query:   35 SSVKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAXRARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNT 319
            +S +  +++    E  +++ +HVRARRGQATDSHS+A R RR KI+ER+K LQD+VPGC K +G A +LDEIINY+QSLQ QVEFLSMKL A ++
Sbjct:  125 NSSRRGKRSKNREEEKEREVVHVRARRGQATDSHSIAERVRRGKINERLKCLQDIVPGCYKTMGMATMLDEIINYVQSLQNQVEFLSMKLTAASS 219          
BLAST of CX288730 vs. ExPASy Swiss-Prot
Match: BEE1_ARATH (Transcription factor BEE 1 OS=Arabidopsis thaliana GN=BEE1 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.658e-25
Identity = 55/92 (59.78%), Postives = 72/92 (78.26%), Query Frame = 2
Query:   44 KPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAXRARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNT 319
            K  ++  +  +  +++ +HVRARRGQATDSHSLA R RR KI+ER++ LQD+VPGC K +G A +LDEIINY+QSLQ QVEFLSMKL A ++
Sbjct:  126 KRLKKKKEEEDEKEREVVHVRARRGQATDSHSLAERVRRGKINERLRCLQDMVPGCYKAMGMATMLDEIINYVQSLQNQVEFLSMKLTAASS 217          
BLAST of CX288730 vs. ExPASy Swiss-Prot
Match: BH075_ARATH (Transcription factor bHLH75 OS=Arabidopsis thaliana GN=BHLH75 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.534e-25
Identity = 58/101 (57.43%), Postives = 75/101 (74.26%), Query Frame = 2
Query:   14 SKAEAEPSSVKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAXRARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVN 316
            SK   + S  + A    +  +P  +D +HVRA+RGQATDSHSLA R RREKI+ER+K LQDLVPGC K +G A++LD II+Y++SLQ Q+EFLSMKL A +
Sbjct:   77 SKRRRKRSEEEEAMNGDETQKP--KDVVHVRAKRGQATDSHSLAERVRREKINERLKCLQDLVPGCYKAMGMAVMLDVIIDYVRSLQNQIEFLSMKLSAAS 175          
BLAST of CX288730 vs. ExPASy Swiss-Prot
Match: BH060_ARATH (Transcription factor bHLH60 OS=Arabidopsis thaliana GN=BHLH60 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.243e-23
Identity = 65/151 (43.05%), Postives = 80/151 (52.98%), Query Frame = 2
Query:   17 KAEAEPSSVKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAXRARREKISERMKILQDLVPGCNK-----------------------------------------------VIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMN 328
            + + E       ++N    E  K  Y+HVRARRGQATDSHSLA RARREKI+ RMK+LQ+LVPGC+K                                               + G ALVLDEIIN++QSLQRQVE LSM+L AVN R++
Sbjct:  176 RKDFEKKGKSSTKKNKSSEENEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCDKGTDFGGKIKIKVCFGVHLLMISGKKVAIFLWKVSCEDLIDCSFSPPRIQGTALVLDEIINHVQSLQRQVEMLSMRLAAVNPRID 326          
BLAST of CX288730 vs. ExPASy Swiss-Prot
Match: BH082_ARATH (Transcription factor bHLH82 OS=Arabidopsis thaliana GN=BHLH82 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.847e-16
Identity = 50/102 (49.02%), Postives = 63/102 (61.76%), Query Frame = 2
Query:    8 HHSKAEAEPS-----SVKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAXRARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSM 298
            HH +    P+      ++P    S    P  +    VRARRGQATD HS+A R RRE+I+ERMK LQ+LVP  NK   KA +LDEII Y++ LQ QV+ LSM
Sbjct:   63 HHPQESGGPTMGSQEGLQPQGTVSTTSAPVVRQKPRVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNTNKT-DKASMLDEIIEYVRFLQLQVKVLSM 163          
BLAST of CX288730 vs. ExPASy Swiss-Prot
Match: BH066_ARATH (Transcription factor bHLH66 OS=Arabidopsis thaliana GN=BHLH66 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.847e-16
Identity = 45/73 (61.64%), Postives = 55/73 (75.34%), Query Frame = 2
Query:   80 PKQDYIHVRARRGQATDSHSLAXRARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSM 298
            P Q    +RARRGQATD HS+A R RRE+I+ERMK LQ+LVP  NK   KA +LDEII+Y++ LQ QV+ LSM
Sbjct:  131 PPQSRTKIRARRGQATDPHSIAERLRRERIAERMKALQELVPNGNKT-DKASMLDEIIDYVKFLQLQVKVLSM 202          
BLAST of CX288730 vs. ExPASy Swiss-Prot
Match: BH069_ARATH (Transcription factor bHLH69 OS=Arabidopsis thaliana GN=BHLH69 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 5.024e-16
Identity = 48/79 (60.76%), Postives = 58/79 (73.42%), Query Frame = 2
Query:   62 SQPPEPPKQDYIHVRARRGQATDSHSLAXRARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSM 298
            +QP   PK     VRARRGQATD HS+A R RRE+I+ERMK LQ+LVP  NK   KA +LDEII+Y++ LQ QV+ LSM
Sbjct:  122 AQPQTKPK-----VRARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNKT-DKASMLDEIIDYVKFLQLQVKVLSM 194          
The following BLAST results are available for this feature:
BLAST of CX288730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
BEE2_ARATH1.609e-3060.87Transcription factor BEE 2 OS=Arabidopsis thaliana... [more]
BH137_ARATH2.101e-3064.76Transcription factor bHLH137 OS=Arabidopsis thalia... [more]
BH048_ARATH2.323e-2961.54Transcription factor bHLH48 OS=Arabidopsis thalian... [more]
BEE3_ARATH1.193e-2558.95Transcription factor BEE 3 OS=Arabidopsis thaliana... [more]
BEE1_ARATH2.658e-2559.78Transcription factor BEE 1 OS=Arabidopsis thaliana... [more]
BH075_ARATH4.534e-2557.43Transcription factor bHLH75 OS=Arabidopsis thalian... [more]
BH060_ARATH4.243e-2343.05Transcription factor bHLH60 OS=Arabidopsis thalian... [more]
BH082_ARATH3.847e-1649.02Transcription factor bHLH82 OS=Arabidopsis thalian... [more]
BH066_ARATH3.847e-1661.64Transcription factor bHLH66 OS=Arabidopsis thalian... [more]
BH069_ARATH5.024e-1660.76Transcription factor bHLH69 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionC02003G04SK IF1 Citrus clementina cDNA clone C02003G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288730 ID=CX288730; Name=CX288730; organism=Citrus clementina; type=EST; length=532bp
TGACAATCACCATTCCAAAGCTGAAGCAGAGCCCAGTTCGGTCAAGCCTG
CTGAACAAAATAGTCAACCACCGGAGCCTCCTAAACAGGATTACATCCAT
GTACGAGCAAGAAGGGGCCAAGCTACTGATAGCCACAGTTTAGCANAAAG
AGCTAGGAGAGAAAAGATAAGCGAAAGGATGAAAATTCTCCAGGACTTGG
TTCCTGGTTGTAACAAGGTCATCGGCAAAGCATTGGTCCTGGATGAGATA
ATTAACTACATCCAATCGCTACAGCGGCAGGTTGAGTTTCTGTCAATGAA
GCTTGAAGCAGTCAATACAAGAATGAACCCTGGCATTGAGGTATTTCCTC
CTAAAGATTTTACTCAACAAACATTTGATACTGCGGGCATGCCATTTGGT
TCTCAAGCTACAAGAGAATACAGCCGTGGTACATCACCCGACTGGTTGCA
TATGCAGATTGGAGGCGGTTTTGAAAGAATGACATAAAAAGATAGAATAA
TTCTTGTCAGTTAATAACAGATTAATGCATTA
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