CX288730

Overview
NameCX288730
Unique NameCX288730
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288730 vs. ExPASy Swiss-Prot
Match: BH007_ARATH (Transcription factor bHLH7 OS=Arabidopsis thaliana GN=BHLH7 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.253e-15
Identity = 49/95 (51.58%), Postives = 67/95 (70.53%), Query Frame = 2
Query:   35 SSVKP---AEQNSQP--PEPPKQDYIH--VRARRGQATDSHSLAXRARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSM 298
            SS+KP    +  SQP  P P +Q  I   VRARRGQATD HS+A R RRE+I+ER++ LQ+LVP  NK   +A ++DEI++Y++ L+ QV+ LSM
Sbjct:  115 SSMKPIFHGQPMSQPAPPMPHQQSTIRPRVRARRGQATDPHSIAERLRRERIAERIRSLQELVPTVNKT-DRAAMIDEIVDYVKFLRLQVKVLSM 208          
BLAST of CX288730 vs. ExPASy Swiss-Prot
Match: UNE12_ARATH (Transcription factor UNE12 OS=Arabidopsis thaliana GN=UNE12 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.238e-14
Identity = 46/95 (48.42%), Postives = 62/95 (65.26%), Query Frame = 2
Query:   35 SSVKPA----EQNSQPPEPPKQDYI---HVRARRGQATDSHSLAXRARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSM 298
            SS+KP          PP  P Q       VRARRGQATD HS+A R RRE+I+ER++ LQ+LVP  NK   +A ++DEI++Y++ L+ QV+ LSM
Sbjct:  117 SSMKPVFHGQPMQQPPPSAPHQPTSIRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKT-DRAAMIDEIVDYVKFLRLQVKVLSM 210          
BLAST of CX288730 vs. ExPASy Swiss-Prot
Match: PIF1_ARATH (Transcription factor PIF1 OS=Arabidopsis thaliana GN=PIF1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.976e-12
Identity = 44/126 (34.92%), Postives = 69/126 (54.76%), Query Frame = 2
Query:   14 SKAEAEPSSVKPAEQNSQPPEPPKQDYIHVRA-------------RRGQATDSHSLAXRARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFPP 352
            SK+E EP      ++  +  E    D    R+             +R +A + H+L+ R RR++I+ERMK LQ+L+P CNK   KA +LDE I Y++SLQ Q++ +SM    +   M PG++ + P
Sbjct:  236 SKSEIEPEKTNVDDRKRKEREATTTDETESRSEETKQARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNK-SDKASMLDEAIEYMKSLQLQIQMMSMGC-GMMPMMYPGMQQYMP 359          
BLAST of CX288730 vs. ExPASy Swiss-Prot
Match: PIF3_ARATH (Transcription factor PIF3 OS=Arabidopsis thaliana GN=PIF3 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.673e-11
Identity = 36/82 (43.90%), Postives = 58/82 (70.73%), Query Frame = 2
Query:  107 ARRGQATDSHSLAXRARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFPP 352
            ++R ++ + H+L+ R RR++I+E+M+ LQ+L+P CNKV  KA +LDE I Y++SLQ QV+ +SM   A    + P + +FPP
Sbjct:  339 SKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKV-DKASMLDEAIEYLKSLQLQVQIMSM---ASGYYLPPAV-MFPP 415          
BLAST of CX288730 vs. ExPASy Swiss-Prot
Match: BH119_ARATH (Transcription factor bHLH119 OS=Arabidopsis thaliana GN=BHLH119 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.853e-11
Identity = 36/106 (33.96%), Postives = 61/106 (57.55%), Query Frame = 2
Query:   14 SKAEAEPSSVKPAEQNSQPPEPPKQDYI-----------HVRARRGQATDSHSLAXRARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSM 298
            +KAE E   ++P  +     +  +++ I               +R +A D H+L+ R RRE+I+ERMK LQ+L+P C K   K  +L+++I Y++SLQ Q++ +SM
Sbjct:  311 NKAETERVQIQPERETKITEDKKREETIAEIQGTEEAHGSTSRKRSRAADMHNLSERRRRERINERMKTLQELLPRCRKT-DKVSMLEDVIEYVKSLQLQIQMMSM 415          
BLAST of CX288730 vs. ExPASy Swiss-Prot
Match: PIF4_ARATH (Transcription factor PIF4 OS=Arabidopsis thaliana GN=PIF4 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.356e-11
Identity = 39/100 (39.00%), Postives = 61/100 (61.00%), Query Frame = 2
Query:  110 RRGQATDSHSLAXRARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSM-----KLEAVNTRMNPGIEVFPPKDFTQQTFDTAGMP 394
            RR +A + H+L+ R RR++I+ERMK LQ+L+P C+K   KA +LDE I+Y++SLQ Q++ + M        A    M PG++   P+ F +Q      +P
Sbjct:  254 RRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKT-DKASILDEAIDYLKSLQLQLQVMWMGSGMAAAAASAPMMFPGVQ---PQQFIRQIQSPVQLP 349          
The following BLAST results are available for this feature:
BLAST of CX288730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
BH007_ARATH4.253e-1551.58Transcription factor bHLH7 OS=Arabidopsis thaliana... [more]
UNE12_ARATH1.238e-1448.42Transcription factor UNE12 OS=Arabidopsis thaliana... [more]
PIF1_ARATH1.976e-1234.92Transcription factor PIF1 OS=Arabidopsis thaliana ... [more]
PIF3_ARATH1.673e-1143.90Transcription factor PIF3 OS=Arabidopsis thaliana ... [more]
BH119_ARATH2.853e-1133.96Transcription factor bHLH119 OS=Arabidopsis thalia... [more]
PIF4_ARATH6.356e-1139.00Transcription factor PIF4 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionC02003G04SK IF1 Citrus clementina cDNA clone C02003G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288730 ID=CX288730; Name=CX288730; organism=Citrus clementina; type=EST; length=532bp
TGACAATCACCATTCCAAAGCTGAAGCAGAGCCCAGTTCGGTCAAGCCTG
CTGAACAAAATAGTCAACCACCGGAGCCTCCTAAACAGGATTACATCCAT
GTACGAGCAAGAAGGGGCCAAGCTACTGATAGCCACAGTTTAGCANAAAG
AGCTAGGAGAGAAAAGATAAGCGAAAGGATGAAAATTCTCCAGGACTTGG
TTCCTGGTTGTAACAAGGTCATCGGCAAAGCATTGGTCCTGGATGAGATA
ATTAACTACATCCAATCGCTACAGCGGCAGGTTGAGTTTCTGTCAATGAA
GCTTGAAGCAGTCAATACAAGAATGAACCCTGGCATTGAGGTATTTCCTC
CTAAAGATTTTACTCAACAAACATTTGATACTGCGGGCATGCCATTTGGT
TCTCAAGCTACAAGAGAATACAGCCGTGGTACATCACCCGACTGGTTGCA
TATGCAGATTGGAGGCGGTTTTGAAAGAATGACATAAAAAGATAGAATAA
TTCTTGTCAGTTAATAACAGATTAATGCATTA
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