CX288733

Overview
NameCX288733
Unique NameCX288733
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length160
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HSP72_SCHPO (Probable heat shock protein ssa2 OS=Schizosaccharomyces pombe GN=ssa2 PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 3.990e-20
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 1
Query:    1 KEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            K ++FSTYSDNQPGVLIQV+EGER RT+D NLLGKFELSGIPPAPRGVPQI V
Sbjct:  422 KSEIFSTYSDNQPGVLIQVFEGERARTKDCNLLGKFELSGIPPAPRGVPQIEV 474          
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HSP71_CANAL (Heat shock protein SSA1 OS=Candida albicans GN=SSA1 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 3.990e-20
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 1
Query:    1 KEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            K + FSTY+DNQPGVLIQV+EGER +T+DNNLLGKFELSGIPPAPRGVPQI V
Sbjct:  423 KSETFSTYADNQPGVLIQVFEGERAKTKDNNLLGKFELSGIPPAPRGVPQIEV 475          
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HSP7D_DROME (Heat shock 70 kDa protein cognate 4 OS=Drosophila melanogaster GN=Hsc70-4 PE=1 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 5.212e-20
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 1
Query:    7 QVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            Q F+TYSDNQPGVLIQVYEGER  T+DNNLLGKFELSGIPPAPRGVPQI V
Sbjct:  426 QTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQIEV 476          
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HSP7A_CAEEL (Heat shock 70 kDa protein A OS=Caenorhabditis elegans GN=hsp-1 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 5.212e-20
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 1
Query:    7 QVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            Q F+TYSDNQPGVLIQVYEGER  T+DNNLLGKFELSGIPPAPRGVPQI V
Sbjct:  427 QTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQIEV 477          
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HSP76_PIG (Heat shock 70 kDa protein 6 OS=Sus scrofa GN=HSPA6 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.212e-20
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 1
Query:    7 QVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            Q F+TYSDNQPGVLIQVYEGER  TRDNNLLG+FELSGIPPAPRGVPQI V
Sbjct:  428 QTFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFELSGIPPAPRGVPQIEV 478          
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HSP72_CANAL (Heat shock protein SSA2 OS=Candida albicans GN=SSA2 PE=1 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 5.212e-20
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 1
Query:    1 KEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            K + FSTY+DNQPGVLIQV+EGER +T+DNNLLGKFELSGIPPAPRGVPQI V
Sbjct:  422 KSETFSTYADNQPGVLIQVFEGERAQTKDNNLLGKFELSGIPPAPRGVPQIEV 474          
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HSP71_RAT (Heat shock 70 kDa protein 1A/1B OS=Rattus norvegicus GN=Hspa1a PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 5.212e-20
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 1
Query:    7 QVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            Q F+TYSDNQPGVLIQVYEGER  TRDNNLLG+FELSGIPPAPRGVPQI V
Sbjct:  426 QTFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFELSGIPPAPRGVPQIEV 476          
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HSP71_PONAB (Heat shock 70 kDa protein 1 OS=Pongo abelii GN=HSPA1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.212e-20
Identity = 44/51 (86.27%), Postives = 48/51 (94.12%), Query Frame = 1
Query:    7 QVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            Q+F+TYSDNQPGVLIQVYEGER  T+DNNLLG+FELSGIPPAPRGVPQI V
Sbjct:  426 QIFTTYSDNQPGVLIQVYEGERAMTKDNNLLGRFELSGIPPAPRGVPQIEV 476          
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HSP71_HUMAN (Heat shock 70 kDa protein 1A/1B OS=Homo sapiens GN=HSPA1A PE=1 SV=5)

HSP 1 Score: 96.2857 bits (238), Expect = 5.212e-20
Identity = 44/51 (86.27%), Postives = 48/51 (94.12%), Query Frame = 1
Query:    7 QVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            Q+F+TYSDNQPGVLIQVYEGER  T+DNNLLG+FELSGIPPAPRGVPQI V
Sbjct:  426 QIFTTYSDNQPGVLIQVYEGERAMTKDNNLLGRFELSGIPPAPRGVPQIEV 476          
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HSP70_TRIRU (Heat shock 70 kDa protein OS=Trichophyton rubrum GN=HSP70 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.212e-20
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 1
Query:    1 KEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            K + FST+SDNQPGVLIQV+EGER RT+DNNLLGKFEL+GIPPAPRGVPQI V
Sbjct:  423 KSETFSTFSDNQPGVLIQVFEGERARTKDNNLLGKFELTGIPPAPRGVPQIEV 475          
The following BLAST results are available for this feature:
BLAST of CX288733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP72_SCHPO3.990e-2084.91Probable heat shock protein ssa2 OS=Schizosaccharo... [more]
HSP71_CANAL3.990e-2083.02Heat shock protein SSA1 OS=Candida albicans GN=SSA... [more]
HSP7D_DROME5.212e-2088.24Heat shock 70 kDa protein cognate 4 OS=Drosophila ... [more]
HSP7A_CAEEL5.212e-2088.24Heat shock 70 kDa protein A OS=Caenorhabditis eleg... [more]
HSP76_PIG5.212e-2088.24Heat shock 70 kDa protein 6 OS=Sus scrofa GN=HSPA6... [more]
HSP72_CANAL5.212e-2083.02Heat shock protein SSA2 OS=Candida albicans GN=SSA... [more]
HSP71_RAT5.212e-2088.24Heat shock 70 kDa protein 1A/1B OS=Rattus norvegic... [more]
HSP71_PONAB5.212e-2086.27Heat shock 70 kDa protein 1 OS=Pongo abelii GN=HSP... [more]
HSP71_HUMAN5.212e-2086.27Heat shock 70 kDa protein 1A/1B OS=Homo sapiens GN... [more]
HSP70_TRIRU5.212e-2083.02Heat shock 70 kDa protein OS=Trichophyton rubrum G... [more]

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Properties
Property NameValue
Genbank descriptionC02003G09SK IF1 Citrus clementina cDNA clone C02003G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288733 ID=CX288733; Name=CX288733; organism=Citrus clementina; type=EST; length=160bp
AAGGAACAAGTTTTCTCCACCTACTCAGACAACCAACCCGGTGTCCTGAT
CCAGGTGTACGAGGGTGAAAGGACAAGAACCAGGGACAATAACTTGTTGG
GCAAATTTGAGCTCTCTGGCATTCCTCCAGCTCCCAGGGGGGTTCCTCAG
ATCACTGTTT
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