CX288736

Overview
NameCX288736
Unique NameCX288736
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_ANAVT (50S ribosomal protein L18 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplR PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.463e-33
Identity = 69/117 (58.97%), Postives = 88/117 (75.21%), Query Frame = 1
Query:  178 TKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528
            T+RE +  RH R++ K+ G+PERPRL VFRSN+H+Y QVIDDT+ HTL SAST++  +   L  +SG   E S ++G++IA   LEKGITKV FDRGG  YHGRI+ALA+AARE GL
Sbjct:    4 TRRESKQRRHRRVRGKVQGSPERPRLAVFRSNEHIYAQVIDDTQHHTLVSASTVEPEVKSSL--ASGANCEASSQIGKLIAVRSLEKGITKVVFDRGGNLYHGRIKALAEAAREAGL 118          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_ANASP (50S ribosomal protein L18 OS=Anabaena sp. (strain PCC 7120) GN=rplR PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.463e-33
Identity = 69/117 (58.97%), Postives = 89/117 (76.07%), Query Frame = 1
Query:  178 TKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528
            T+RE +  RH R++ K+ G+PERPRL VFRSN+H+Y QVIDDT+ HTLA+AST++  +   L  +SG   E S ++G++IA   LEKGITKV FDRGG  YHGRI+ALA+AARE GL
Sbjct:    4 TRRESKERRHRRVRGKVQGSPERPRLAVFRSNEHIYAQVIDDTQHHTLAAASTVEPELKSSL--ASGSNCEASAQIGKLIAARSLEKGITKVVFDRGGNLYHGRIKALAEAAREAGL 118          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_GEOTN (50S ribosomal protein L18 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rplR PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.316e-32
Identity = 70/113 (61.95%), Postives = 84/113 (74.34%), Query Frame = 1
Query:  193 RTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            R  RH+RI+KKI GT ERPRL VFRSNKH+Y Q+IDD K  T+ SAST+ K    E    S   I+ +KKVGE++AK  LEKGI +V FDRGGY YHGR++ALADAARE GL+
Sbjct:   11 RKKRHARIRKKIFGTAERPRLSVFRSNKHIYAQIIDDVKSATIVSASTLDK----EFSLDSTNNIDAAKKVGELVAKRALEKGIKQVVFDRGGYLYHGRVKALADAAREAGLE 119          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SYNP2 (50S ribosomal protein L18 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplR PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.245e-32
Identity = 69/117 (58.97%), Postives = 87/117 (74.36%), Query Frame = 1
Query:  178 TKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528
            T+++    RH RI+++++GT +RPRL VFRS+KH+Y QVIDD K HTL +AST+ K +  EL  +SG  I  S  VG +IAK  LEKGITKV FDRGG  YHGR++ALADAARE GL
Sbjct:    4 TRKQLTQRRHFRIRRRVEGTGDRPRLAVFRSHKHIYAQVIDDEKQHTLVAASTLDKDLKGEL--ASGGNISASTAVGNLIAKRALEKGITKVVFDRGGNLYHGRVKALADAAREAGL 118          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_CALS8 (50S ribosomal protein L18 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rplR PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.001e-32
Identity = 66/117 (56.41%), Postives = 88/117 (75.21%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            + E R  RH RI+KK+ GT ERPRLCV++S K++Y Q+IDD K HTL +AS+++  I   L  +S  +IE ++ +G +IA+   EKGITKV FDRGGYPYHGR++ALADAARE GL+
Sbjct:    7 RNEKRLIRHKRIRKKVFGTAERPRLCVYKSLKYIYAQIIDDEKGHTLVAASSLEPEIKSRL--TSTKSIEAAQYIGRVIAERAKEKGITKVVFDRGGYPYHGRVKALADAAREAGLE 121          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_AQUAE (50S ribosomal protein L18 OS=Aquifex aeolicus GN=rplR PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 6.532e-32
Identity = 67/121 (55.37%), Postives = 84/121 (69.42%), Query Frame = 1
Query:  169 RPRTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            R +T+RE R  RH RI+KK+ GTPERPRLCV+RS KH Y Q+IDDT  HTL SAST+            G +I+ ++ V E+IA+  LEKGI KV FDRGG+ YHG+I+A AD  RE GL+
Sbjct:    3 RLKTRREKRLRRHKRIRKKVFGTPERPRLCVYRSLKHFYAQIIDDTIGHTLVSASTLDPEFEKITGKRGGKSIKDAEVVAEIIARRALEKGIKKVVFDRGGFKYHGKIKAFADKCREMGLE 123          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_DICTD (50S ribosomal protein L18 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rplR PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.455e-31
Identity = 66/119 (55.46%), Postives = 91/119 (76.47%), Query Frame = 1
Query:  175 RTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            R+++E R  RH RI+KKI GTPERPRL V++S +++Y Q+IDDTK HTL +AS+++K +  +L   S   IE +K VGE+IAK  LEKGI +V FDRGG+ YHG+++ALAD+AR  GL+
Sbjct:    5 RSRKELRRIRHLRIRKKITGTPERPRLAVYKSLRYIYAQIIDDTKGHTLVAASSLEKELRSQL--KSTKNIEAAKLVGEVIAKRALEKGIKRVVFDRGGFLYHGKVKALADSARAAGLE 121          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_DICT6 (50S ribosomal protein L18 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=rplR PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.482e-31
Identity = 68/119 (57.14%), Postives = 90/119 (75.63%), Query Frame = 1
Query:  175 RTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            R+++E R  RH RI+KKI GT ERPRL V++S +++Y Q+IDDTK HTL SAS+++K I  +L   S   IE +K VGE+IAK  LEKGI KV FDRGG+ YHG+++ALAD+AR  GL+
Sbjct:    5 RSRKELRKIRHLRIRKKIIGTSERPRLAVYKSLRYIYAQIIDDTKGHTLVSASSLEKEIRSQL--KSTKNIEAAKLVGEVIAKRALEKGIKKVVFDRGGFLYHGKVKALADSARAAGLE 121          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_AQUPY (50S ribosomal protein L18 OS=Aquifex pyrophilus GN=rplR PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.482e-31
Identity = 66/121 (54.55%), Postives = 83/121 (68.60%), Query Frame = 1
Query:  169 RPRTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            R +T+RE R  RH RI+KK+ GTPERPRLCV+RS  H Y Q+IDDT  HTL SAST+            G +I+ ++ V E+IA+  LEKGI KV FDRGG+ YHG+I+A AD  RE GL+
Sbjct:    3 RLKTRREKRLRRHKRIRKKVFGTPERPRLCVYRSLNHFYAQIIDDTIGHTLVSASTLDPEFEKITGKRGGKSIKDAEVVAEIIARRALEKGIKKVVFDRGGFKYHGKIKAFADKCREMGLE 123          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_ACAM1 (50S ribosomal protein L18 OS=Acaryochloris marina (strain MBIC 11017) GN=rplR PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.242e-31
Identity = 65/118 (55.08%), Postives = 87/118 (73.73%), Query Frame = 1
Query:  178 TKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            T+R+   +RH R+++K+ GT ERPRL VFRSN+H+Y QVIDD + HTLA+AST    +  +L  SSG T + S  VG+++A+  +EKGI  V FDRGG  YHGR++ALADAARE GL+
Sbjct:    4 TRRDATRSRHQRVRRKVVGTAERPRLAVFRSNQHIYAQVIDDAQQHTLAAAST----VESDLKSSSGATCDASTAVGKLVAERAIEKGIKAVVFDRGGNLYHGRVKALADAAREAGLE 117          
The following BLAST results are available for this feature:
BLAST of CX288736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL18_ANAVT3.463e-3358.9750S ribosomal protein L18 OS=Anabaena variabilis (... [more]
RL18_ANASP3.463e-3358.9750S ribosomal protein L18 OS=Anabaena sp. (strain ... [more]
RL18_GEOTN1.316e-3261.9550S ribosomal protein L18 OS=Geobacillus thermoden... [more]
RL18_SYNP22.245e-3258.9750S ribosomal protein L18 OS=Synechococcus sp. (st... [more]
RL18_CALS85.001e-3256.4150S ribosomal protein L18 OS=Caldicellulosiruptor ... [more]
RL18_AQUAE6.532e-3255.3750S ribosomal protein L18 OS=Aquifex aeolicus GN=r... [more]
RL18_DICTD1.455e-3155.4650S ribosomal protein L18 OS=Dictyoglomus turgidum... [more]
RL18_DICT62.482e-3157.1450S ribosomal protein L18 OS=Dictyoglomus thermoph... [more]
RL18_AQUPY2.482e-3154.5550S ribosomal protein L18 OS=Aquifex pyrophilus GN... [more]
RL18_ACAM13.242e-3155.0850S ribosomal protein L18 OS=Acaryochloris marina ... [more]

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Properties
Property NameValue
Genbank descriptionC02003G12SK IF1 Citrus clementina cDNA clone C02003G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288736 ID=CX288736; Name=CX288736; organism=Citrus clementina; type=EST; length=532bp
GAAAGTGTAAGGAGGAAGGGAATGGCAGCCGGTGCGAGCTCAGTTTGGAT
GCTTAATCAGAGTTCATTTCTAGGATCATGTCAGCAACTTTCGAGTGTTT
CAAAATTAGTGGCAAGCAGAAGGCCAAGGCCAGCACCGCCATCTCTTTTC
ATCGTCGAAGCCTCGACCAGACCAAGAACCAAAAGAGAGGACCGCACTGC
CCGCCATTCTCGCATCAAAAAGAAGATTGATGGGACTCCTGAGAGGCCGA
GGCTGTGTGTTTTCCGCTCCAACAAGCATCTCTATGTCCAGGTGATTGAT
GATACTAAGATGCACACACTTGCTTCAGCTTCGACGATGCAAAAGCCCAT
CTCTGACGAGCTTGACTATAGTTCTGGTCCGACGATTGAAGTTTCAAAGA
AGGTGGGTGAAATGATTGCAAAGTCATGTTTGGAGAAAGGGATCACAAAA
GTAGCCTTTGATCGAGGTGGGTACCCATACCATGGACGGATACAAGCCCT
AGCCGATGCAGCTCGGGAATATGGTCTTCAAT
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