CX288736

Overview
NameCX288736
Unique NameCX288736
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_BACSU (50S ribosomal protein L18 OS=Bacillus subtilis GN=rplR PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.584e-30
Identity = 68/118 (57.63%), Postives = 86/118 (72.88%), Query Frame = 1
Query:  178 TKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            +K   R  RH+R++ K+ GT ERPRL VFRSNKH+Y Q+IDD    TLASAST+ K ++ E   S+G T   + KVGE++AK   EKGI+ V FDRGGY YHGR++ALADAARE GL+
Sbjct:    6 SKNAARLKRHARVRAKLSGTAERPRLNVFRSNKHIYAQIIDDVNGVTLASASTLDKDLNVE---STGDT-SAATKVGELVAKRAAEKGISDVVFDRGGYLYHGRVKALADAAREAGLK 119          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_ROSS1 (50S ribosomal protein L18 OS=Roseiflexus sp. (strain RS-1) GN=rplR PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 4.681e-30
Identity = 69/120 (57.50%), Postives = 85/120 (70.83%), Query Frame = 1
Query:  175 RTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPT-IEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            RT RE R  RH R++KK+ GTP+RPRLCVFRSN H+Y QVIDDT   TLA+AST++  +   L   +G T  E +K VG +IA+     GI +V FDRGG+ YHGR+QALADAAR  GLQ
Sbjct:    4 RTPRELRIRRHRRVRKKVHGTPQRPRLCVFRSNMHIYAQVIDDTVGRTLAAASTVEPELRASL---TGKTKTEQAKAVGAVIAERARAAGIERVVFDRGGFKYHGRVQALADAARAGGLQ 120          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_BACCN (50S ribosomal protein L18 OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=rplR PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 4.681e-30
Identity = 66/117 (56.41%), Postives = 84/117 (71.79%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K   R  RH+R++ K+ GT ERPRL VFRSN+H+Y QVIDD K  TL SAST+ K    +L  +    IE + KVGE++AK  +EKG+ +V FDRGGY YHGR++ALA+AARE GLQ
Sbjct:    7 KNATRKKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVKGVTLVSASTLDK----DLALNGTGNIEAATKVGELVAKRAVEKGVKEVVFDRGGYLYHGRVKALAEAAREAGLQ 119          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_CYAP8 (50S ribosomal protein L18 OS=Cyanothece sp. (strain PCC 8801) GN=rplR PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 6.113e-30
Identity = 64/118 (54.24%), Postives = 85/118 (72.03%), Query Frame = 1
Query:  178 TKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            +++E    RH RI+KK++GTP  PRL VFRSN H+Y Q+IDD   HT+A+AST++  +   L  SSG T E S  VG+++A+  L +GI +V FDRGG  YHGR++ALADAARE GLQ
Sbjct:    4 SRKESVQRRHRRIRKKVNGTPNCPRLAVFRSNLHIYAQIIDDVGQHTIAAASTVEPDLKKSL--SSGSTCEASAAVGKLVAERALAQGIEQVVFDRGGNLYHGRVKALADAAREAGLQ 119          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_BACHD (50S ribosomal protein L18 OS=Bacillus halodurans GN=rplR PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 6.113e-30
Identity = 66/122 (54.10%), Postives = 86/122 (70.49%), Query Frame = 1
Query:  166 TRPRTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            T+P  K   R  RH+ +++ I GTPERPRL VFRS+KH+Y Q+IDD    T+A+AS++ K    EL   +G  +E +KKVGE++AK  LEKG   + FDRGGY YHGR+ +LADAARE GLQ
Sbjct:    3 TKP-IKNVARKKRHAHVRRTITGTPERPRLNVFRSSKHIYAQLIDDVNGVTVAAASSLDK----ELKLENGGNVEAAKKVGELVAKRALEKGYKTIVFDRGGYVYHGRVASLADAAREAGLQ 119          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_CHLSY (50S ribosomal protein L18 OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=rplR PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.043e-29
Identity = 68/121 (56.20%), Postives = 88/121 (72.73%), Query Frame = 1
Query:  175 RTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKK---VGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528
            RT RE R  RH+RI+K++ GTPERPRL VFRS+ H+Y QVIDDT  HTL +AST +K       +S  P +  +++   VG++IA+  L+ GITKV FDRGGY YHGR++ALA+AARE GL
Sbjct:    4 RTPRELRLRRHNRIRKRVFGTPERPRLNVFRSHVHIYAQVIDDTVGHTLVAASTNEK------GWSGSPELTKTQEAALVGKLIAERALQAGITKVVFDRGGYKYHGRVKALAEAAREAGL 118          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_CHLAA (50S ribosomal protein L18 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=rplR PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.043e-29
Identity = 68/121 (56.20%), Postives = 88/121 (72.73%), Query Frame = 1
Query:  175 RTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKK---VGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528
            RT RE R  RH+RI+K++ GTPERPRL VFRS+ H+Y QVIDDT  HTL +AST +K       +S  P +  +++   VG++IA+  L+ GITKV FDRGGY YHGR++ALA+AARE GL
Sbjct:    4 RTPRELRLRRHNRIRKRVFGTPERPRLNVFRSHVHIYAQVIDDTVGHTLVAASTNEK------GWSGSPELTKTQEAALVGKLIAERALQAGITKVVFDRGGYKYHGRVKALAEAAREAGL 118          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SYNR3 (50S ribosomal protein L18 OS=Synechococcus sp. (strain RCC307) GN=rplR PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.779e-29
Identity = 60/117 (51.28%), Postives = 85/117 (72.65%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            ++E    RH R+++ ++GTPERPRL V+RSN+H+Y QVIDD   HTLA+AS++ K +   L  ++G   + S  VG+++AK  + KGI +V FDRGG  YHGR++ALA+AARE GLQ
Sbjct:    5 RKEQTQKRHRRLRRHLEGTPERPRLAVYRSNEHIYAQVIDDAAQHTLAAASSLDKDLRTSL--NNGANCDASTAVGQLVAKRAIAKGIQQVVFDRGGNLYHGRVKALAEAAREAGLQ 119          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_THETN (50S ribosomal protein L18 OS=Thermoanaerobacter tengcongensis GN=rplR PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.323e-29
Identity = 65/117 (55.56%), Postives = 83/117 (70.94%), Query Frame = 1
Query:  178 TKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528
            ++ E R  RH R++KK+ GTPERPRL V++S KH+Y Q+IDDTK HTL SAST+   +    D + G   + +K VGE+IAK  LEKGI  V FDRGGY YHG ++ LADAAR+ GL
Sbjct:    6 SRNELRKKRHLRVRKKVFGTPERPRLNVYKSLKHIYAQIIDDTKGHTLVSASTLDPELR---DVAKGANKQSAKLVGELIAKRALEKGIKDVVFDRGGYLYHGVVKELADAARQAGL 119          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_ROSCS (50S ribosomal protein L18 OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=rplR PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.323e-29
Identity = 70/120 (58.33%), Postives = 84/120 (70.00%), Query Frame = 1
Query:  175 RTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPT-IEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            RT RE R  RH R++KK+ GTP+RPRLCVFRSN H+Y QVIDDT   TLA+AST++  +   L   +G T  E +K VG  IA+     GI  V FDRGG+ YHGRIQALADAARE GL+
Sbjct:    4 RTPRELRLRRHRRVRKKVSGTPQRPRLCVFRSNMHIYAQVIDDTVGRTLAAASTVEPELRASL---AGKTKTERAKVVGAAIAERARAVGIECVVFDRGGFKYHGRIQALADAAREGGLK 120          
The following BLAST results are available for this feature:
BLAST of CX288736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL18_BACSU3.584e-3057.6350S ribosomal protein L18 OS=Bacillus subtilis GN=... [more]
RL18_ROSS14.681e-3057.5050S ribosomal protein L18 OS=Roseiflexus sp. (stra... [more]
RL18_BACCN4.681e-3056.4150S ribosomal protein L18 OS=Bacillus cereus subsp... [more]
RL18_CYAP86.113e-3054.2450S ribosomal protein L18 OS=Cyanothece sp. (strai... [more]
RL18_BACHD6.113e-3054.1050S ribosomal protein L18 OS=Bacillus halodurans G... [more]
RL18_CHLSY1.043e-2956.2050S ribosomal protein L18 OS=Chloroflexus aurantia... [more]
RL18_CHLAA1.043e-2956.2050S ribosomal protein L18 OS=Chloroflexus aurantia... [more]
RL18_SYNR31.779e-2951.2850S ribosomal protein L18 OS=Synechococcus sp. (st... [more]
RL18_THETN2.323e-2955.5650S ribosomal protein L18 OS=Thermoanaerobacter te... [more]
RL18_ROSCS2.323e-2958.3350S ribosomal protein L18 OS=Roseiflexus castenhol... [more]

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Properties
Property NameValue
Genbank descriptionC02003G12SK IF1 Citrus clementina cDNA clone C02003G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288736 ID=CX288736; Name=CX288736; organism=Citrus clementina; type=EST; length=532bp
GAAAGTGTAAGGAGGAAGGGAATGGCAGCCGGTGCGAGCTCAGTTTGGAT
GCTTAATCAGAGTTCATTTCTAGGATCATGTCAGCAACTTTCGAGTGTTT
CAAAATTAGTGGCAAGCAGAAGGCCAAGGCCAGCACCGCCATCTCTTTTC
ATCGTCGAAGCCTCGACCAGACCAAGAACCAAAAGAGAGGACCGCACTGC
CCGCCATTCTCGCATCAAAAAGAAGATTGATGGGACTCCTGAGAGGCCGA
GGCTGTGTGTTTTCCGCTCCAACAAGCATCTCTATGTCCAGGTGATTGAT
GATACTAAGATGCACACACTTGCTTCAGCTTCGACGATGCAAAAGCCCAT
CTCTGACGAGCTTGACTATAGTTCTGGTCCGACGATTGAAGTTTCAAAGA
AGGTGGGTGAAATGATTGCAAAGTCATGTTTGGAGAAAGGGATCACAAAA
GTAGCCTTTGATCGAGGTGGGTACCCATACCATGGACGGATACAAGCCCT
AGCCGATGCAGCTCGGGAATATGGTCTTCAAT
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