CX288736
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_BACSU (50S ribosomal protein L18 OS=Bacillus subtilis GN=rplR PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 3.584e-30 Identity = 68/118 (57.63%), Postives = 86/118 (72.88%), Query Frame = 1 Query: 178 TKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 +K R RH+R++ K+ GT ERPRL VFRSNKH+Y Q+IDD TLASAST+ K ++ E S+G T + KVGE++AK EKGI+ V FDRGGY YHGR++ALADAARE GL+ Sbjct: 6 SKNAARLKRHARVRAKLSGTAERPRLNVFRSNKHIYAQIIDDVNGVTLASASTLDKDLNVE---STGDT-SAATKVGELVAKRAAEKGISDVVFDRGGYLYHGRVKALADAAREAGLK 119
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_ROSS1 (50S ribosomal protein L18 OS=Roseiflexus sp. (strain RS-1) GN=rplR PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 4.681e-30 Identity = 69/120 (57.50%), Postives = 85/120 (70.83%), Query Frame = 1 Query: 175 RTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPT-IEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 RT RE R RH R++KK+ GTP+RPRLCVFRSN H+Y QVIDDT TLA+AST++ + L +G T E +K VG +IA+ GI +V FDRGG+ YHGR+QALADAAR GLQ Sbjct: 4 RTPRELRIRRHRRVRKKVHGTPQRPRLCVFRSNMHIYAQVIDDTVGRTLAAASTVEPELRASL---TGKTKTEQAKAVGAVIAERARAAGIERVVFDRGGFKYHGRVQALADAARAGGLQ 120
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_BACCN (50S ribosomal protein L18 OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=rplR PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 4.681e-30 Identity = 66/117 (56.41%), Postives = 84/117 (71.79%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K R RH+R++ K+ GT ERPRL VFRSN+H+Y QVIDD K TL SAST+ K +L + IE + KVGE++AK +EKG+ +V FDRGGY YHGR++ALA+AARE GLQ Sbjct: 7 KNATRKKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVKGVTLVSASTLDK----DLALNGTGNIEAATKVGELVAKRAVEKGVKEVVFDRGGYLYHGRVKALAEAAREAGLQ 119
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_CYAP8 (50S ribosomal protein L18 OS=Cyanothece sp. (strain PCC 8801) GN=rplR PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 6.113e-30 Identity = 64/118 (54.24%), Postives = 85/118 (72.03%), Query Frame = 1 Query: 178 TKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 +++E RH RI+KK++GTP PRL VFRSN H+Y Q+IDD HT+A+AST++ + L SSG T E S VG+++A+ L +GI +V FDRGG YHGR++ALADAARE GLQ Sbjct: 4 SRKESVQRRHRRIRKKVNGTPNCPRLAVFRSNLHIYAQIIDDVGQHTIAAASTVEPDLKKSL--SSGSTCEASAAVGKLVAERALAQGIEQVVFDRGGNLYHGRVKALADAAREAGLQ 119
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_BACHD (50S ribosomal protein L18 OS=Bacillus halodurans GN=rplR PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 6.113e-30 Identity = 66/122 (54.10%), Postives = 86/122 (70.49%), Query Frame = 1 Query: 166 TRPRTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 T+P K R RH+ +++ I GTPERPRL VFRS+KH+Y Q+IDD T+A+AS++ K EL +G +E +KKVGE++AK LEKG + FDRGGY YHGR+ +LADAARE GLQ Sbjct: 3 TKP-IKNVARKKRHAHVRRTITGTPERPRLNVFRSSKHIYAQLIDDVNGVTVAAASSLDK----ELKLENGGNVEAAKKVGELVAKRALEKGYKTIVFDRGGYVYHGRVASLADAAREAGLQ 119
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_CHLSY (50S ribosomal protein L18 OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=rplR PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.043e-29 Identity = 68/121 (56.20%), Postives = 88/121 (72.73%), Query Frame = 1 Query: 175 RTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKK---VGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528 RT RE R RH+RI+K++ GTPERPRL VFRS+ H+Y QVIDDT HTL +AST +K +S P + +++ VG++IA+ L+ GITKV FDRGGY YHGR++ALA+AARE GL Sbjct: 4 RTPRELRLRRHNRIRKRVFGTPERPRLNVFRSHVHIYAQVIDDTVGHTLVAASTNEK------GWSGSPELTKTQEAALVGKLIAERALQAGITKVVFDRGGYKYHGRVKALAEAAREAGL 118
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_CHLAA (50S ribosomal protein L18 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=rplR PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.043e-29 Identity = 68/121 (56.20%), Postives = 88/121 (72.73%), Query Frame = 1 Query: 175 RTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKK---VGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528 RT RE R RH+RI+K++ GTPERPRL VFRS+ H+Y QVIDDT HTL +AST +K +S P + +++ VG++IA+ L+ GITKV FDRGGY YHGR++ALA+AARE GL Sbjct: 4 RTPRELRLRRHNRIRKRVFGTPERPRLNVFRSHVHIYAQVIDDTVGHTLVAASTNEK------GWSGSPELTKTQEAALVGKLIAERALQAGITKVVFDRGGYKYHGRVKALAEAAREAGL 118
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SYNR3 (50S ribosomal protein L18 OS=Synechococcus sp. (strain RCC307) GN=rplR PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 1.779e-29 Identity = 60/117 (51.28%), Postives = 85/117 (72.65%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 ++E RH R+++ ++GTPERPRL V+RSN+H+Y QVIDD HTLA+AS++ K + L ++G + S VG+++AK + KGI +V FDRGG YHGR++ALA+AARE GLQ Sbjct: 5 RKEQTQKRHRRLRRHLEGTPERPRLAVYRSNEHIYAQVIDDAAQHTLAAASSLDKDLRTSL--NNGANCDASTAVGQLVAKRAIAKGIQQVVFDRGGNLYHGRVKALAEAAREAGLQ 119
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_THETN (50S ribosomal protein L18 OS=Thermoanaerobacter tengcongensis GN=rplR PE=3 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 2.323e-29 Identity = 65/117 (55.56%), Postives = 83/117 (70.94%), Query Frame = 1 Query: 178 TKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528 ++ E R RH R++KK+ GTPERPRL V++S KH+Y Q+IDDTK HTL SAST+ + D + G + +K VGE+IAK LEKGI V FDRGGY YHG ++ LADAAR+ GL Sbjct: 6 SRNELRKKRHLRVRKKVFGTPERPRLNVYKSLKHIYAQIIDDTKGHTLVSASTLDPELR---DVAKGANKQSAKLVGELIAKRALEKGIKDVVFDRGGYLYHGVVKELADAARQAGL 119
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_ROSCS (50S ribosomal protein L18 OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=rplR PE=3 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 2.323e-29 Identity = 70/120 (58.33%), Postives = 84/120 (70.00%), Query Frame = 1 Query: 175 RTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPT-IEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 RT RE R RH R++KK+ GTP+RPRLCVFRSN H+Y QVIDDT TLA+AST++ + L +G T E +K VG IA+ GI V FDRGG+ YHGRIQALADAARE GL+ Sbjct: 4 RTPRELRLRRHRRVRKKVSGTPQRPRLCVFRSNMHIYAQVIDDTVGRTLAAASTVEPELRASL---AGKTKTERAKVVGAAIAERARAVGIECVVFDRGGFKYHGRIQALADAAREGGLK 120 The following BLAST results are available for this feature:
BLAST of CX288736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288736 ID=CX288736; Name=CX288736; organism=Citrus clementina; type=EST; length=532bpback to top |