CX288736

Overview
NameCX288736
Unique NameCX288736
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_KOSOT (50S ribosomal protein L18 OS=Kosmotoga olearia (strain TBF 19.5.1) GN=rplR PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.323e-29
Identity = 62/119 (52.10%), Postives = 86/119 (72.27%), Query Frame = 1
Query:  175 RTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            R ++E R  RH R++ KI GTPERPRL V+RS +H+Y Q+IDD    T+ SAST+ K + ++L  +     E +K+VG++IAK   EKGI K+ FDRGG+ +HGRI++LADAARE GL+
Sbjct:    5 RDRKELRRKRHLRVRSKIKGTPERPRLAVYRSERHIYAQIIDDIAGRTIVSASTVDKELREKLTKTWNQ--EAAKEVGKLIAKRAAEKGIKKIVFDRGGFKFHGRIKSLADAAREAGLE 121          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_BACA2 (50S ribosomal protein L18 OS=Bacillus amyloliquefaciens (strain FZB42) GN=rplR PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.323e-29
Identity = 66/118 (55.93%), Postives = 86/118 (72.88%), Query Frame = 1
Query:  178 TKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            +K   R  RH+R++ K+ GT ERPRL VFRSNKH+Y Q+IDD    TLASAST+ K ++ E   S+G +   + KVGE++AK   EKG++ V FDRGGY YHGR++ALADAARE GL+
Sbjct:    6 SKNAARQKRHARVRAKLSGTAERPRLNVFRSNKHIYAQIIDDVNGVTLASASTLDKDLNVE---STGDS-AAAAKVGELVAKRASEKGVSDVVFDRGGYLYHGRVKALADAAREAGLK 119          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SORC5 (50S ribosomal protein L18 OS=Sorangium cellulosum (strain So ce56) GN=rplR PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.034e-29
Identity = 65/112 (58.04%), Postives = 79/112 (70.54%), Query Frame = 1
Query:  193 RTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528
            R  R  RI+KK++GTPERPRL VFRS+KH+Y QVIDD    TLA AST+ K +   LD  +   +E +KKVG +IA+ C E+ I KV FDR GY YHGR+ ALA AARE GL
Sbjct:    8 RERRKLRIRKKVEGTPERPRLSVFRSSKHIYAQVIDDVSGKTLAHASTLSKDLKGSLDEDN--KVEAAKKVGALIARICKERQIDKVVFDRNGYLYHGRVSALAQAAREAGL 117          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_CARHZ (50S ribosomal protein L18 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=rplR PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.034e-29
Identity = 64/114 (56.14%), Postives = 81/114 (71.05%), Query Frame = 1
Query:  190 DRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            +R  RH R++KKI GTPERPRL V+RS KH+Y Q+IDD    TL +AST+   +  ++ Y  G  IE +K VG +IA+    KGI KV FDRGGY YHGR++ALA+AARE GLQ
Sbjct:   10 ERKRRHLRVRKKIHGTPERPRLNVYRSLKHIYAQIIDDVSGRTLVAASTLDPELRGKIGY--GGNIEAAKAVGRLIAERAKAKGIEKVVFDRGGYLYHGRVKALAEAAREGGLQ 121          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_BACHK (50S ribosomal protein L18 OS=Bacillus thuringiensis subsp. konkukian GN=rplR PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.034e-29
Identity = 65/117 (55.56%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K   R  RH+R++ K+ GT ERPRL VFRSN+H+Y QVIDD    TL SAST+ K    +L  +    IE + KVGE +AK  +EKG+ +V FDRGGY YHGR++ALA+AARE GLQ
Sbjct:    7 KNATRKKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDK----DLALNGTSNIEAATKVGESVAKRAVEKGVKEVVFDRGGYLYHGRVKALAEAAREAGLQ 119          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_BACCZ (50S ribosomal protein L18 OS=Bacillus cereus (strain ZK / E33L) GN=rplR PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.034e-29
Identity = 65/117 (55.56%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K   R  RH+R++ K+ GT ERPRL VFRSN+H+Y QVIDD    TL SAST+ K    +L  +    IE + KVGE +AK  +EKG+ +V FDRGGY YHGR++ALA+AARE GLQ
Sbjct:    7 KNATRKKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDK----DLALNGTSNIEAATKVGESVAKRAVEKGVKEVVFDRGGYLYHGRVKALAEAAREAGLQ 119          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_BACCR (50S ribosomal protein L18 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rplR PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.034e-29
Identity = 65/117 (55.56%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K   R  RH+R++ K+ GT ERPRL VFRSN+H+Y QVIDD    TL SAST+ K    +L  +    IE + KVGE +AK  +EKG+ +V FDRGGY YHGR++ALA+AARE GLQ
Sbjct:    7 KNATRKKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDK----DLALNGTSNIEAATKVGESVAKRAVEKGVKEVVFDRGGYLYHGRVKALAEAAREAGLQ 119          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_BACCQ (50S ribosomal protein L18 OS=Bacillus cereus (strain Q1) GN=rplR PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.034e-29
Identity = 65/117 (55.56%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K   R  RH+R++ K+ GT ERPRL VFRSN+H+Y QVIDD    TL SAST+ K    +L  +    IE + KVGE +AK  +EKG+ +V FDRGGY YHGR++ALA+AARE GLQ
Sbjct:    7 KNATRKKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDK----DLALNGTSNIEAATKVGESVAKRAVEKGVKEVVFDRGGYLYHGRVKALAEAAREAGLQ 119          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_BACC7 (50S ribosomal protein L18 OS=Bacillus cereus (strain AH187) GN=rplR PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.034e-29
Identity = 65/117 (55.56%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K   R  RH+R++ K+ GT ERPRL VFRSN+H+Y QVIDD    TL SAST+ K    +L  +    IE + KVGE +AK  +EKG+ +V FDRGGY YHGR++ALA+AARE GLQ
Sbjct:    7 KNATRKKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDK----DLALNGTSNIEAATKVGESVAKRAVEKGVKEVVFDRGGYLYHGRVKALAEAAREAGLQ 119          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_BACC4 (50S ribosomal protein L18 OS=Bacillus cereus (strain B4264) GN=rplR PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.034e-29
Identity = 65/117 (55.56%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K   R  RH+R++ K+ GT ERPRL VFRSN+H+Y QVIDD    TL SAST+ K    +L  +    IE + KVGE +AK  +EKG+ +V FDRGGY YHGR++ALA+AARE GLQ
Sbjct:    7 KNATRKKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDK----DLALNGTSNIEAATKVGESVAKRAVEKGVKEVVFDRGGYLYHGRVKALAEAAREAGLQ 119          
The following BLAST results are available for this feature:
BLAST of CX288736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL18_KOSOT2.323e-2952.1050S ribosomal protein L18 OS=Kosmotoga olearia (st... [more]
RL18_BACA22.323e-2955.9350S ribosomal protein L18 OS=Bacillus amyloliquefa... [more]
RL18_SORC53.034e-2958.0450S ribosomal protein L18 OS=Sorangium cellulosum ... [more]
RL18_CARHZ3.034e-2956.1450S ribosomal protein L18 OS=Carboxydothermus hydr... [more]
RL18_BACHK3.034e-2955.5650S ribosomal protein L18 OS=Bacillus thuringiensi... [more]
RL18_BACCZ3.034e-2955.5650S ribosomal protein L18 OS=Bacillus cereus (stra... [more]
RL18_BACCR3.034e-2955.5650S ribosomal protein L18 OS=Bacillus cereus (stra... [more]
RL18_BACCQ3.034e-2955.5650S ribosomal protein L18 OS=Bacillus cereus (stra... [more]
RL18_BACC73.034e-2955.5650S ribosomal protein L18 OS=Bacillus cereus (stra... [more]
RL18_BACC43.034e-2955.5650S ribosomal protein L18 OS=Bacillus cereus (stra... [more]

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Properties
Property NameValue
Genbank descriptionC02003G12SK IF1 Citrus clementina cDNA clone C02003G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288736 ID=CX288736; Name=CX288736; organism=Citrus clementina; type=EST; length=532bp
GAAAGTGTAAGGAGGAAGGGAATGGCAGCCGGTGCGAGCTCAGTTTGGAT
GCTTAATCAGAGTTCATTTCTAGGATCATGTCAGCAACTTTCGAGTGTTT
CAAAATTAGTGGCAAGCAGAAGGCCAAGGCCAGCACCGCCATCTCTTTTC
ATCGTCGAAGCCTCGACCAGACCAAGAACCAAAAGAGAGGACCGCACTGC
CCGCCATTCTCGCATCAAAAAGAAGATTGATGGGACTCCTGAGAGGCCGA
GGCTGTGTGTTTTCCGCTCCAACAAGCATCTCTATGTCCAGGTGATTGAT
GATACTAAGATGCACACACTTGCTTCAGCTTCGACGATGCAAAAGCCCAT
CTCTGACGAGCTTGACTATAGTTCTGGTCCGACGATTGAAGTTTCAAAGA
AGGTGGGTGAAATGATTGCAAAGTCATGTTTGGAGAAAGGGATCACAAAA
GTAGCCTTTGATCGAGGTGGGTACCCATACCATGGACGGATACAAGCCCT
AGCCGATGCAGCTCGGGAATATGGTCTTCAAT
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