CX288736

Overview
NameCX288736
Unique NameCX288736
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_KLEP3 (50S ribosomal protein L18 OS=Klebsiella pneumoniae (strain 342) GN=rplR PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.669e-19
Identity = 52/117 (44.44%), Postives = 74/117 (63.25%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R ++K+       RL V R+ +H+Y QVI       L +AST++K IS++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQ
Sbjct:    3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAISEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_GLUDA (50S ribosomal protein L18 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rplR PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.669e-19
Identity = 52/122 (42.62%), Postives = 78/122 (63.93%), Query Frame = 1
Query:  163 STRPRTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528
            ST+   +   R     ++++K  G   RPRL VFRS K++Y QVIDD    TLA+AS++ K + ++L   +G   + +  VG+++A+  +  G++ V FDRG Y YHGRI+ALA+AARE GL
Sbjct:    2 STQQDLRERRRQRLRFQLRRKGGG---RPRLSVFRSGKNIYAQVIDDVAGRTLAAASSLDKALREQL--KTGADSDAAVAVGKLVAERAVAAGVSLVVFDRGSYMYHGRIKALAEAAREGGL 118          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_COLP3 (50S ribosomal protein L18 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=rplR PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.669e-19
Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            KR  R  R  R + KI       RL +FR+ +H+Y Q+I  T    +ASAST+ K +S +++ +    +  +  VG+ IA+  + KGITK+AFDR G+ YHGR++ALA+AARE GLQ
Sbjct:    3 KRSSRLRRAKRARAKISELGAN-RLVIFRTPRHIYAQLIAPTGSEVIASASTLDKEVSAQIEKTGN--VAAATAVGKAIAERAVAKGITKIAFDRSGFLYHGRVKALAEAAREAGLQ 116          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_BEII9 (50S ribosomal protein L18 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplR PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.669e-19
Identity = 49/110 (44.55%), Postives = 75/110 (68.18%), Query Frame = 1
Query:  202 RHSRIKKKIDGTPE-RPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528
            R +R+++ +      +PRL VFRS+K +Y Q+IDD +  TL +AS+++K   + L   +G T+E +K +G++IA+  ++ GI  V FDRG Y YHGR++ALAD ARE GL
Sbjct:   11 RKARVRRSLRARAYGKPRLSVFRSSKQIYCQIIDDGEGKTLVAASSLEKANREGL--KTGATVEAAKIIGKLIAERAVQAGIKDVIFDRGAYMYHGRVKALADGAREGGL 118          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_BART1 (50S ribosomal protein L18 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rplR PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.669e-19
Identity = 51/110 (46.36%), Postives = 74/110 (67.27%), Query Frame = 1
Query:  202 RHSRIKKKIDGTP-ERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528
            R  R++++I     +RPRL V+RSN+++Y QVIDD +  TL SAST++  +   L   SG   E +  VG++IA+   + G+ +V FDRG Y YHGR++ALA+AARE GL
Sbjct:   11 RARRVRRRIKMVSHDRPRLSVYRSNQNIYAQVIDDLRGCTLVSASTLESDLKKSL--KSGADKEAAFAVGKLIAERAKKAGVNEVVFDRGAYVYHGRVKALAEAAREGGL 118          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_ACICJ (50S ribosomal protein L18 OS=Acidiphilium cryptum (strain JF-5) GN=rplR PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.669e-19
Identity = 52/115 (45.22%), Postives = 72/115 (62.61%), Query Frame = 1
Query:  187 EDRTARHSRIKKKIDGTPE-RPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528
            E+   R  R++ +I      RPRL VFRS KH+Y QVIDD    TLA+AS++   +   L   +G     +  VG+++A+   E G+T+V FDRG Y YHGR++ALA+AARE GL
Sbjct:    6 ENEARRRQRLRYQIRLKAHGRPRLSVFRSGKHIYAQVIDDAAGRTLAAASSLDAGLRSAL--KTGADKAAAAAVGKLVAERAKEAGVTQVVFDRGAYMYHGRVKALAEAARESGL 118          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_VIBVY (50S ribosomal protein L18 OS=Vibrio vulnificus (strain YJ016) GN=rplR PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.179e-19
Identity = 51/117 (43.59%), Postives = 76/117 (64.96%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R ++KI       RL V R+ +H+Y QVI       +A+AST++K I +++ Y+    IE +K VG+ +A+  LEKG++ VAFDR G+ YHGR+ ALAD+ARE GL+
Sbjct:    3 KKASRIRRATRARRKI-AELGATRLVVHRTPRHVYAQVIAANGSEVIAAASTVEKAIREQVKYTGN--IEAAKAVGKAVAERALEKGVSTVAFDRSGFQYHGRVAALADSAREAGLK 116          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_VIBVU (50S ribosomal protein L18 OS=Vibrio vulnificus GN=rplR PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.179e-19
Identity = 51/117 (43.59%), Postives = 76/117 (64.96%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R ++KI       RL V R+ +H+Y QVI       +A+AST++K I +++ Y+    IE +K VG+ +A+  LEKG++ VAFDR G+ YHGR+ ALAD+ARE GL+
Sbjct:    3 KKASRIRRATRARRKI-AELGATRLVVHRTPRHVYAQVIAANGSEVIAAASTVEKAIREQVKYTGN--IEAAKAVGKAVAERALEKGVSTVAFDRSGFQYHGRVAALADSAREAGLK 116          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_VIBCM (50S ribosomal protein L18 OS=Vibrio cholerae serotype O1 (strain M66-2) GN=rplR PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.179e-19
Identity = 51/117 (43.59%), Postives = 76/117 (64.96%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R ++KI       RL V R+ +H+Y QVI       +A+AST++K I +++ Y+    I+ +K VG+ +A+  LEKG+T VAFDR G+ YHGR+ ALAD+ARE GL+
Sbjct:    3 KKASRIRRATRARRKI-AELGATRLVVHRTPRHVYAQVIAANGSEVIAAASTVEKAIREQVKYTGN--IDAAKAVGKAVAERALEKGVTVVAFDRSGFQYHGRVAALADSAREAGLK 116          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_VIBCH (50S ribosomal protein L18 OS=Vibrio cholerae GN=rplR PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.179e-19
Identity = 51/117 (43.59%), Postives = 76/117 (64.96%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R ++KI       RL V R+ +H+Y QVI       +A+AST++K I +++ Y+    I+ +K VG+ +A+  LEKG+T VAFDR G+ YHGR+ ALAD+ARE GL+
Sbjct:    3 KKASRIRRATRARRKI-AELGATRLVVHRTPRHVYAQVIAANGSEVIAAASTVEKAIREQVKYTGN--IDAAKAVGKAVAERALEKGVTVVAFDRSGFQYHGRVAALADSAREAGLK 116          
The following BLAST results are available for this feature:
BLAST of CX288736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL18_KLEP31.669e-1944.4450S ribosomal protein L18 OS=Klebsiella pneumoniae... [more]
RL18_GLUDA1.669e-1942.6250S ribosomal protein L18 OS=Gluconacetobacter dia... [more]
RL18_COLP31.669e-1943.5950S ribosomal protein L18 OS=Colwellia psychreryth... [more]
RL18_BEII91.669e-1944.5550S ribosomal protein L18 OS=Beijerinckia indica s... [more]
RL18_BART11.669e-1946.3650S ribosomal protein L18 OS=Bartonella tribocorum... [more]
RL18_ACICJ1.669e-1945.2250S ribosomal protein L18 OS=Acidiphilium cryptum ... [more]
RL18_VIBVY2.179e-1943.5950S ribosomal protein L18 OS=Vibrio vulnificus (st... [more]
RL18_VIBVU2.179e-1943.5950S ribosomal protein L18 OS=Vibrio vulnificus GN=... [more]
RL18_VIBCM2.179e-1943.5950S ribosomal protein L18 OS=Vibrio cholerae serot... [more]
RL18_VIBCH2.179e-1943.5950S ribosomal protein L18 OS=Vibrio cholerae GN=rp... [more]

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Properties
Property NameValue
Genbank descriptionC02003G12SK IF1 Citrus clementina cDNA clone C02003G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288736 ID=CX288736; Name=CX288736; organism=Citrus clementina; type=EST; length=532bp
GAAAGTGTAAGGAGGAAGGGAATGGCAGCCGGTGCGAGCTCAGTTTGGAT
GCTTAATCAGAGTTCATTTCTAGGATCATGTCAGCAACTTTCGAGTGTTT
CAAAATTAGTGGCAAGCAGAAGGCCAAGGCCAGCACCGCCATCTCTTTTC
ATCGTCGAAGCCTCGACCAGACCAAGAACCAAAAGAGAGGACCGCACTGC
CCGCCATTCTCGCATCAAAAAGAAGATTGATGGGACTCCTGAGAGGCCGA
GGCTGTGTGTTTTCCGCTCCAACAAGCATCTCTATGTCCAGGTGATTGAT
GATACTAAGATGCACACACTTGCTTCAGCTTCGACGATGCAAAAGCCCAT
CTCTGACGAGCTTGACTATAGTTCTGGTCCGACGATTGAAGTTTCAAAGA
AGGTGGGTGAAATGATTGCAAAGTCATGTTTGGAGAAAGGGATCACAAAA
GTAGCCTTTGATCGAGGTGGGTACCCATACCATGGACGGATACAAGCCCT
AGCCGATGCAGCTCGGGAATATGGTCTTCAAT
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