CX288736
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_KLEP3 (50S ribosomal protein L18 OS=Klebsiella pneumoniae (strain 342) GN=rplR PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.669e-19 Identity = 52/117 (44.44%), Postives = 74/117 (63.25%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K+ R R +R ++K+ RL V R+ +H+Y QVI L +AST++K IS++L Y+ + + VG+ +A+ LEKGI V+FDR G+ YHGR+QALADAARE GLQ Sbjct: 3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAISEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_GLUDA (50S ribosomal protein L18 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rplR PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.669e-19 Identity = 52/122 (42.62%), Postives = 78/122 (63.93%), Query Frame = 1 Query: 163 STRPRTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528 ST+ + R ++++K G RPRL VFRS K++Y QVIDD TLA+AS++ K + ++L +G + + VG+++A+ + G++ V FDRG Y YHGRI+ALA+AARE GL Sbjct: 2 STQQDLRERRRQRLRFQLRRKGGG---RPRLSVFRSGKNIYAQVIDDVAGRTLAAASSLDKALREQL--KTGADSDAAVAVGKLVAERAVAAGVSLVVFDRGSYMYHGRIKALAEAAREGGL 118
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_COLP3 (50S ribosomal protein L18 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=rplR PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.669e-19 Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 KR R R R + KI RL +FR+ +H+Y Q+I T +ASAST+ K +S +++ + + + VG+ IA+ + KGITK+AFDR G+ YHGR++ALA+AARE GLQ Sbjct: 3 KRSSRLRRAKRARAKISELGAN-RLVIFRTPRHIYAQLIAPTGSEVIASASTLDKEVSAQIEKTGN--VAAATAVGKAIAERAVAKGITKIAFDRSGFLYHGRVKALAEAAREAGLQ 116
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_BEII9 (50S ribosomal protein L18 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplR PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.669e-19 Identity = 49/110 (44.55%), Postives = 75/110 (68.18%), Query Frame = 1 Query: 202 RHSRIKKKIDGTPE-RPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528 R +R+++ + +PRL VFRS+K +Y Q+IDD + TL +AS+++K + L +G T+E +K +G++IA+ ++ GI V FDRG Y YHGR++ALAD ARE GL Sbjct: 11 RKARVRRSLRARAYGKPRLSVFRSSKQIYCQIIDDGEGKTLVAASSLEKANREGL--KTGATVEAAKIIGKLIAERAVQAGIKDVIFDRGAYMYHGRVKALADGAREGGL 118
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_BART1 (50S ribosomal protein L18 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rplR PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.669e-19 Identity = 51/110 (46.36%), Postives = 74/110 (67.27%), Query Frame = 1 Query: 202 RHSRIKKKIDGTP-ERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528 R R++++I +RPRL V+RSN+++Y QVIDD + TL SAST++ + L SG E + VG++IA+ + G+ +V FDRG Y YHGR++ALA+AARE GL Sbjct: 11 RARRVRRRIKMVSHDRPRLSVYRSNQNIYAQVIDDLRGCTLVSASTLESDLKKSL--KSGADKEAAFAVGKLIAERAKKAGVNEVVFDRGAYVYHGRVKALAEAAREGGL 118
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_ACICJ (50S ribosomal protein L18 OS=Acidiphilium cryptum (strain JF-5) GN=rplR PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.669e-19 Identity = 52/115 (45.22%), Postives = 72/115 (62.61%), Query Frame = 1 Query: 187 EDRTARHSRIKKKIDGTPE-RPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528 E+ R R++ +I RPRL VFRS KH+Y QVIDD TLA+AS++ + L +G + VG+++A+ E G+T+V FDRG Y YHGR++ALA+AARE GL Sbjct: 6 ENEARRRQRLRYQIRLKAHGRPRLSVFRSGKHIYAQVIDDAAGRTLAAASSLDAGLRSAL--KTGADKAAAAAVGKLVAERAKEAGVTQVVFDRGAYMYHGRVKALAEAARESGL 118
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_VIBVY (50S ribosomal protein L18 OS=Vibrio vulnificus (strain YJ016) GN=rplR PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.179e-19 Identity = 51/117 (43.59%), Postives = 76/117 (64.96%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K+ R R +R ++KI RL V R+ +H+Y QVI +A+AST++K I +++ Y+ IE +K VG+ +A+ LEKG++ VAFDR G+ YHGR+ ALAD+ARE GL+ Sbjct: 3 KKASRIRRATRARRKI-AELGATRLVVHRTPRHVYAQVIAANGSEVIAAASTVEKAIREQVKYTGN--IEAAKAVGKAVAERALEKGVSTVAFDRSGFQYHGRVAALADSAREAGLK 116
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_VIBVU (50S ribosomal protein L18 OS=Vibrio vulnificus GN=rplR PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.179e-19 Identity = 51/117 (43.59%), Postives = 76/117 (64.96%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K+ R R +R ++KI RL V R+ +H+Y QVI +A+AST++K I +++ Y+ IE +K VG+ +A+ LEKG++ VAFDR G+ YHGR+ ALAD+ARE GL+ Sbjct: 3 KKASRIRRATRARRKI-AELGATRLVVHRTPRHVYAQVIAANGSEVIAAASTVEKAIREQVKYTGN--IEAAKAVGKAVAERALEKGVSTVAFDRSGFQYHGRVAALADSAREAGLK 116
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_VIBCM (50S ribosomal protein L18 OS=Vibrio cholerae serotype O1 (strain M66-2) GN=rplR PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.179e-19 Identity = 51/117 (43.59%), Postives = 76/117 (64.96%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K+ R R +R ++KI RL V R+ +H+Y QVI +A+AST++K I +++ Y+ I+ +K VG+ +A+ LEKG+T VAFDR G+ YHGR+ ALAD+ARE GL+ Sbjct: 3 KKASRIRRATRARRKI-AELGATRLVVHRTPRHVYAQVIAANGSEVIAAASTVEKAIREQVKYTGN--IDAAKAVGKAVAERALEKGVTVVAFDRSGFQYHGRVAALADSAREAGLK 116
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_VIBCH (50S ribosomal protein L18 OS=Vibrio cholerae GN=rplR PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.179e-19 Identity = 51/117 (43.59%), Postives = 76/117 (64.96%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K+ R R +R ++KI RL V R+ +H+Y QVI +A+AST++K I +++ Y+ I+ +K VG+ +A+ LEKG+T VAFDR G+ YHGR+ ALAD+ARE GL+ Sbjct: 3 KKASRIRRATRARRKI-AELGATRLVVHRTPRHVYAQVIAANGSEVIAAASTVEKAIREQVKYTGN--IDAAKAVGKAVAERALEKGVTVVAFDRSGFQYHGRVAALADSAREAGLK 116 The following BLAST results are available for this feature:
BLAST of CX288736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288736 ID=CX288736; Name=CX288736; organism=Citrus clementina; type=EST; length=532bpback to top |