CX288736

Overview
NameCX288736
Unique NameCX288736
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SHESR (50S ribosomal protein L18 OS=Shewanella sp. (strain MR-7) GN=rplR PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.846e-19
Identity = 52/117 (44.44%), Postives = 76/117 (64.96%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R  R +KKI       RL V R+ +H+Y QVI+  +   +A+AST++K + ++L   S   ++ +K VG+ +A+  +EKG+T VAFDR G+ YHGR+ ALADAARE GLQ
Sbjct:    3 KKTSRLRRAIRARKKIQELGVN-RLVVHRTPRHIYAQVINP-EAQVVAAASTVEKAVKEQL--KSTGNVDAAKAVGKFVAERAIEKGVTSVAFDRSGFKYHGRVAALADAAREAGLQ 115          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SHESM (50S ribosomal protein L18 OS=Shewanella sp. (strain MR-4) GN=rplR PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.846e-19
Identity = 52/117 (44.44%), Postives = 76/117 (64.96%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R  R +KKI       RL V R+ +H+Y QVI+  +   +A+AST++K + ++L   S   ++ +K VG+ +A+  +EKG+T VAFDR G+ YHGR+ ALADAARE GLQ
Sbjct:    3 KKTSRLRRAIRARKKIQELGVN-RLVVHRTPRHIYAQVINP-EAQVVAAASTVEKAVKEQL--KSTGNVDAAKAVGKFVAERAIEKGVTSVAFDRSGFKYHGRVAALADAAREAGLQ 115          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SHESH (50S ribosomal protein L18 OS=Shewanella sediminis (strain HAW-EB3) GN=rplR PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.846e-19
Identity = 52/117 (44.44%), Postives = 75/117 (64.10%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R +KKI       RL V R+ +H Y QVI       LA+AST +K ++++L Y+    ++ +K VG+ +A+  +EKG+T VAFDR G+ YHGR+ ALADAARE GL+
Sbjct:    3 KKTSRLRRATRARKKIQELGVN-RLVVHRTPRHTYAQVISPDSQ-VLAAASTAEKAVTEQLKYTGN--VDAAKAVGKTVAERAIEKGVTVVAFDRSGFKYHGRVAALADAAREAGLK 115          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SHESA (50S ribosomal protein L18 OS=Shewanella sp. (strain ANA-3) GN=rplR PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.846e-19
Identity = 53/117 (45.30%), Postives = 76/117 (64.96%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R  R +KKI       RL V R+ +H+Y QVI+  +   +A+AST++K + ++L   S   ++ +K VG+ IA+  +EKG+T VAFDR G+ YHGR+ ALADAARE GLQ
Sbjct:    3 KKTSRLRRAIRARKKIQELGVN-RLVVHRTPRHIYAQVINP-EAQVVAAASTVEKAVKEQL--KSTGNVDAAKAVGKFIAERAIEKGVTTVAFDRSGFKYHGRVAALADAAREAGLQ 115          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SHEPW (50S ribosomal protein L18 OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=rplR PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.846e-19
Identity = 52/117 (44.44%), Postives = 75/117 (64.10%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R +KKI       RL V R+ +H Y QVI    +  LA+AST +K +S++L Y+    ++ +K VG+ +A+  +EKG+  VAFDR G+ YHGR+ ALADAARE GL+
Sbjct:    3 KKTSRLRRATRARKKIQELGVN-RLVVHRTPRHTYAQVISPANV-VLAAASTAEKAVSEQLKYTGN--VDAAKAVGKTVAERAIEKGVAVVAFDRSGFKYHGRVAALADAAREAGLK 115          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SHEPC (50S ribosomal protein L18 OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=rplR PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.846e-19
Identity = 52/117 (44.44%), Postives = 76/117 (64.96%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R  R +KKI       RL V R+ +H+Y QVI+  +   +A+AST++K + ++L   S   ++ +K VG+ +A+  +EKG+T VAFDR G+ YHGR+ ALADAARE GLQ
Sbjct:    3 KKTSRLRRAIRARKKIQELGVN-RLVVHRTPRHIYAQVINP-EAQVVAAASTVEKAVKEQL--KSTGNVDAAKAVGKFVAERAIEKGVTSVAFDRSGFKYHGRVAALADAAREAGLQ 115          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SHEON (50S ribosomal protein L18 OS=Shewanella oneidensis GN=rplR PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.846e-19
Identity = 52/117 (44.44%), Postives = 76/117 (64.96%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R  R +KKI       RL V R+ +H+Y QVI+  +   +A+AST++K + ++L   S   ++ +K VG+ +A+  +EKG+T VAFDR G+ YHGR+ ALADAARE GLQ
Sbjct:    3 KKTSRLRRAIRARKKIQELGVN-RLVVHRTPRHIYAQVINP-EAQVVAAASTVEKAVKEQL--KSTGNVDAAKAVGKFVAERAIEKGVTNVAFDRSGFKYHGRVAALADAAREAGLQ 115          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_RHIEC (50S ribosomal protein L18 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rplR PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.846e-19
Identity = 54/116 (46.55%), Postives = 74/116 (63.79%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528
            +R +R  RH  IK   +G   RPRL V RS+K++Y Q+IDD    TLASAST+ K +   L   +G     +  VG+++A+   + G+T V FDRG + YHGRI+ALA+AARE GL
Sbjct:   10 RRANRVRRH--IKSVANG---RPRLSVHRSSKNIYAQIIDDVAGKTLASASTLDKDLRGSL--KTGADTAAAAAVGKLVAERASKAGVTDVVFDRGAFIYHGRIKALAEAAREGGL 118          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_RHIE6 (50S ribosomal protein L18 OS=Rhizobium etli (strain CIAT 652) GN=rplR PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.846e-19
Identity = 53/116 (45.69%), Postives = 76/116 (65.52%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528
            +R +R  RH  IK   +G   RPRL V RS+K++Y Q+IDD    TLASAST++K +   L   +G     +  VG+++A+   + G+++V FDRG + YHGRI+ALA+AARE GL
Sbjct:   10 RRANRVRRH--IKSVANG---RPRLSVHRSSKNIYAQIIDDVAGKTLASASTLEKDLRGSL--KTGADTAAAAAVGKLVAERASKAGVSEVVFDRGAFIYHGRIKALAEAAREGGL 118          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_ERWT9 (50S ribosomal protein L18 OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=rplR PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.846e-19
Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R ++K+       RL V R+ +H+Y QVI       L +AST++K I ++L Y+     + +  VG+ +A+  +EKGIT V+FDR G+ YHGR+QALADAARE GLQ
Sbjct:    3 KKSARIRRATRARRKLKELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIGEQLKYTGNK--DAAAAVGKAVAERAIEKGITGVSFDRSGFQYHGRVQALADAAREAGLQ 116          
The following BLAST results are available for this feature:
BLAST of CX288736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL18_SHESR2.846e-1944.4450S ribosomal protein L18 OS=Shewanella sp. (strai... [more]
RL18_SHESM2.846e-1944.4450S ribosomal protein L18 OS=Shewanella sp. (strai... [more]
RL18_SHESH2.846e-1944.4450S ribosomal protein L18 OS=Shewanella sediminis ... [more]
RL18_SHESA2.846e-1945.3050S ribosomal protein L18 OS=Shewanella sp. (strai... [more]
RL18_SHEPW2.846e-1944.4450S ribosomal protein L18 OS=Shewanella piezotoler... [more]
RL18_SHEPC2.846e-1944.4450S ribosomal protein L18 OS=Shewanella putrefacie... [more]
RL18_SHEON2.846e-1944.4450S ribosomal protein L18 OS=Shewanella oneidensis... [more]
RL18_RHIEC2.846e-1946.5550S ribosomal protein L18 OS=Rhizobium etli (strai... [more]
RL18_RHIE62.846e-1945.6950S ribosomal protein L18 OS=Rhizobium etli (strai... [more]
RL18_ERWT92.846e-1943.5950S ribosomal protein L18 OS=Erwinia tasmaniensis ... [more]

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Properties
Property NameValue
Genbank descriptionC02003G12SK IF1 Citrus clementina cDNA clone C02003G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288736 ID=CX288736; Name=CX288736; organism=Citrus clementina; type=EST; length=532bp
GAAAGTGTAAGGAGGAAGGGAATGGCAGCCGGTGCGAGCTCAGTTTGGAT
GCTTAATCAGAGTTCATTTCTAGGATCATGTCAGCAACTTTCGAGTGTTT
CAAAATTAGTGGCAAGCAGAAGGCCAAGGCCAGCACCGCCATCTCTTTTC
ATCGTCGAAGCCTCGACCAGACCAAGAACCAAAAGAGAGGACCGCACTGC
CCGCCATTCTCGCATCAAAAAGAAGATTGATGGGACTCCTGAGAGGCCGA
GGCTGTGTGTTTTCCGCTCCAACAAGCATCTCTATGTCCAGGTGATTGAT
GATACTAAGATGCACACACTTGCTTCAGCTTCGACGATGCAAAAGCCCAT
CTCTGACGAGCTTGACTATAGTTCTGGTCCGACGATTGAAGTTTCAAAGA
AGGTGGGTGAAATGATTGCAAAGTCATGTTTGGAGAAAGGGATCACAAAA
GTAGCCTTTGATCGAGGTGGGTACCCATACCATGGACGGATACAAGCCCT
AGCCGATGCAGCTCGGGAATATGGTCTTCAAT
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