CX288736
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SHESR (50S ribosomal protein L18 OS=Shewanella sp. (strain MR-7) GN=rplR PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 2.846e-19 Identity = 52/117 (44.44%), Postives = 76/117 (64.96%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K+ R R R +KKI RL V R+ +H+Y QVI+ + +A+AST++K + ++L S ++ +K VG+ +A+ +EKG+T VAFDR G+ YHGR+ ALADAARE GLQ Sbjct: 3 KKTSRLRRAIRARKKIQELGVN-RLVVHRTPRHIYAQVINP-EAQVVAAASTVEKAVKEQL--KSTGNVDAAKAVGKFVAERAIEKGVTSVAFDRSGFKYHGRVAALADAAREAGLQ 115
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SHESM (50S ribosomal protein L18 OS=Shewanella sp. (strain MR-4) GN=rplR PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 2.846e-19 Identity = 52/117 (44.44%), Postives = 76/117 (64.96%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K+ R R R +KKI RL V R+ +H+Y QVI+ + +A+AST++K + ++L S ++ +K VG+ +A+ +EKG+T VAFDR G+ YHGR+ ALADAARE GLQ Sbjct: 3 KKTSRLRRAIRARKKIQELGVN-RLVVHRTPRHIYAQVINP-EAQVVAAASTVEKAVKEQL--KSTGNVDAAKAVGKFVAERAIEKGVTSVAFDRSGFKYHGRVAALADAAREAGLQ 115
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SHESH (50S ribosomal protein L18 OS=Shewanella sediminis (strain HAW-EB3) GN=rplR PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 2.846e-19 Identity = 52/117 (44.44%), Postives = 75/117 (64.10%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K+ R R +R +KKI RL V R+ +H Y QVI LA+AST +K ++++L Y+ ++ +K VG+ +A+ +EKG+T VAFDR G+ YHGR+ ALADAARE GL+ Sbjct: 3 KKTSRLRRATRARKKIQELGVN-RLVVHRTPRHTYAQVISPDSQ-VLAAASTAEKAVTEQLKYTGN--VDAAKAVGKTVAERAIEKGVTVVAFDRSGFKYHGRVAALADAAREAGLK 115
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SHESA (50S ribosomal protein L18 OS=Shewanella sp. (strain ANA-3) GN=rplR PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 2.846e-19 Identity = 53/117 (45.30%), Postives = 76/117 (64.96%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K+ R R R +KKI RL V R+ +H+Y QVI+ + +A+AST++K + ++L S ++ +K VG+ IA+ +EKG+T VAFDR G+ YHGR+ ALADAARE GLQ Sbjct: 3 KKTSRLRRAIRARKKIQELGVN-RLVVHRTPRHIYAQVINP-EAQVVAAASTVEKAVKEQL--KSTGNVDAAKAVGKFIAERAIEKGVTTVAFDRSGFKYHGRVAALADAAREAGLQ 115
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SHEPW (50S ribosomal protein L18 OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=rplR PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 2.846e-19 Identity = 52/117 (44.44%), Postives = 75/117 (64.10%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K+ R R +R +KKI RL V R+ +H Y QVI + LA+AST +K +S++L Y+ ++ +K VG+ +A+ +EKG+ VAFDR G+ YHGR+ ALADAARE GL+ Sbjct: 3 KKTSRLRRATRARKKIQELGVN-RLVVHRTPRHTYAQVISPANV-VLAAASTAEKAVSEQLKYTGN--VDAAKAVGKTVAERAIEKGVAVVAFDRSGFKYHGRVAALADAAREAGLK 115
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SHEPC (50S ribosomal protein L18 OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=rplR PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 2.846e-19 Identity = 52/117 (44.44%), Postives = 76/117 (64.96%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K+ R R R +KKI RL V R+ +H+Y QVI+ + +A+AST++K + ++L S ++ +K VG+ +A+ +EKG+T VAFDR G+ YHGR+ ALADAARE GLQ Sbjct: 3 KKTSRLRRAIRARKKIQELGVN-RLVVHRTPRHIYAQVINP-EAQVVAAASTVEKAVKEQL--KSTGNVDAAKAVGKFVAERAIEKGVTSVAFDRSGFKYHGRVAALADAAREAGLQ 115
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SHEON (50S ribosomal protein L18 OS=Shewanella oneidensis GN=rplR PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 2.846e-19 Identity = 52/117 (44.44%), Postives = 76/117 (64.96%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K+ R R R +KKI RL V R+ +H+Y QVI+ + +A+AST++K + ++L S ++ +K VG+ +A+ +EKG+T VAFDR G+ YHGR+ ALADAARE GLQ Sbjct: 3 KKTSRLRRAIRARKKIQELGVN-RLVVHRTPRHIYAQVINP-EAQVVAAASTVEKAVKEQL--KSTGNVDAAKAVGKFVAERAIEKGVTNVAFDRSGFKYHGRVAALADAAREAGLQ 115
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_RHIEC (50S ribosomal protein L18 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rplR PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 2.846e-19 Identity = 54/116 (46.55%), Postives = 74/116 (63.79%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528 +R +R RH IK +G RPRL V RS+K++Y Q+IDD TLASAST+ K + L +G + VG+++A+ + G+T V FDRG + YHGRI+ALA+AARE GL Sbjct: 10 RRANRVRRH--IKSVANG---RPRLSVHRSSKNIYAQIIDDVAGKTLASASTLDKDLRGSL--KTGADTAAAAAVGKLVAERASKAGVTDVVFDRGAFIYHGRIKALAEAAREGGL 118
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_RHIE6 (50S ribosomal protein L18 OS=Rhizobium etli (strain CIAT 652) GN=rplR PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 2.846e-19 Identity = 53/116 (45.69%), Postives = 76/116 (65.52%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528 +R +R RH IK +G RPRL V RS+K++Y Q+IDD TLASAST++K + L +G + VG+++A+ + G+++V FDRG + YHGRI+ALA+AARE GL Sbjct: 10 RRANRVRRH--IKSVANG---RPRLSVHRSSKNIYAQIIDDVAGKTLASASTLEKDLRGSL--KTGADTAAAAAVGKLVAERASKAGVSEVVFDRGAFIYHGRIKALAEAAREGGL 118
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_ERWT9 (50S ribosomal protein L18 OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=rplR PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 2.846e-19 Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K+ R R +R ++K+ RL V R+ +H+Y QVI L +AST++K I ++L Y+ + + VG+ +A+ +EKGIT V+FDR G+ YHGR+QALADAARE GLQ Sbjct: 3 KKSARIRRATRARRKLKELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIGEQLKYTGNK--DAAAAVGKAVAERAIEKGITGVSFDRSGFQYHGRVQALADAAREAGLQ 116 The following BLAST results are available for this feature:
BLAST of CX288736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288736 ID=CX288736; Name=CX288736; organism=Citrus clementina; type=EST; length=532bpback to top |