CX288736

Overview
NameCX288736
Unique NameCX288736
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_PSEPW (50S ribosomal protein L18 OS=Pseudomonas putida (strain W619) GN=rplR PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.717e-19
Identity = 52/113 (46.02%), Postives = 73/113 (64.60%), Query Frame = 1
Query:  193 RTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            R AR +R+K       E  RLCVFRS++H+Y QVI       LASAST+ K + D     +   I+ + KVG+++A+     G+++VAFDR G+ YHGR++ALADAARE GL+
Sbjct:   10 RRARKARLKMH---ELEVVRLCVFRSSQHIYAQVISADGSKVLASASTLDKDLRD----GATGNIDAATKVGKLVAERAKAAGVSQVAFDRSGFKYHGRVKALADAAREGGLE 115          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_PSEPK (50S ribosomal protein L18 OS=Pseudomonas putida (strain KT2440) GN=rplR PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.717e-19
Identity = 52/113 (46.02%), Postives = 73/113 (64.60%), Query Frame = 1
Query:  193 RTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            R AR +R+K       E  RLCVFRS++H+Y QVI       LASAST+ K + D     +   I+ + KVG+++A+     G+++VAFDR G+ YHGR++ALADAARE GL+
Sbjct:   10 RRARKARLKMH---ELEVVRLCVFRSSQHIYAQVISADGSKVLASASTLDKDLRD----GATGNIDAATKVGKLVAERAKAAGVSQVAFDRSGFKYHGRVKALADAAREGGLE 115          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_PSEPG (50S ribosomal protein L18 OS=Pseudomonas putida (strain GB-1) GN=rplR PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.717e-19
Identity = 52/113 (46.02%), Postives = 73/113 (64.60%), Query Frame = 1
Query:  193 RTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            R AR +R+K       E  RLCVFRS++H+Y QVI       LASAST+ K + D     +   I+ + KVG+++A+     G+++VAFDR G+ YHGR++ALADAARE GL+
Sbjct:   10 RRARKARLKMH---ELEVVRLCVFRSSQHIYAQVISADGSKVLASASTLDKDLRD----GATGNIDAATKVGKLVAERAKAAGVSQVAFDRSGFKYHGRVKALADAAREGGLE 115          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_PSEP1 (50S ribosomal protein L18 OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=rplR PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.717e-19
Identity = 52/113 (46.02%), Postives = 73/113 (64.60%), Query Frame = 1
Query:  193 RTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            R AR +R+K       E  RLCVFRS++H+Y QVI       LASAST+ K + D     +   I+ + KVG+++A+     G+++VAFDR G+ YHGR++ALADAARE GL+
Sbjct:   10 RRARKARLKMH---ELEVVRLCVFRSSQHIYAQVISADGSKVLASASTLDKDLRD----GATGNIDAATKVGKLVAERAKAAGVSQVAFDRSGFKYHGRVKALADAAREGGLE 115          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_KLEP7 (50S ribosomal protein L18 OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=rplR PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.717e-19
Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R ++K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQ
Sbjct:    3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_HAES2 (50S ribosomal protein L18 OS=Haemophilus somnus (strain 2336) GN=rplR PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.717e-19
Identity = 46/94 (48.94%), Postives = 67/94 (71.28%), Query Frame = 1
Query:  250 RLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            RL + R+++H+Y QVI       LA+AST++K IS+++ Y+     + +  VG+++A+  LEKGI  VAFDR G+ YHGR+Q+LADAARE GLQ
Sbjct:   25 RLVIHRTSRHIYAQVIAPNGSEVLATASTVEKAISEQVKYTGNK--DAAAVVGKIVAERALEKGIKSVAFDRSGFKYHGRVQSLADAAREAGLQ 116          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_HAES1 (50S ribosomal protein L18 OS=Haemophilus somnus (strain 129Pt) GN=rplR PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.717e-19
Identity = 46/94 (48.94%), Postives = 67/94 (71.28%), Query Frame = 1
Query:  250 RLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            RL + R+++H+Y QVI       LA+AST++K IS+++ Y+     + +  VG+++A+  LEKGI  VAFDR G+ YHGR+Q+LADAARE GLQ
Sbjct:   25 RLVIHRTSRHIYAQVIAPNGSEVLATASTVEKAISEQVKYTGNK--DAAAVVGKIVAERALEKGIKSVAFDRSGFKYHGRVQSLADAAREAGLQ 116          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_ESCF3 (50S ribosomal protein L18 OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=rplR PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.717e-19
Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R ++K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQ
Sbjct:    3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_ECOUT (50S ribosomal protein L18 OS=Escherichia coli (strain UTI89 / UPEC) GN=rplR PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.717e-19
Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R ++K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQ
Sbjct:    3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_ECOSM (50S ribosomal protein L18 OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=rplR PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.717e-19
Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R ++K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQ
Sbjct:    3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116          
The following BLAST results are available for this feature:
BLAST of CX288736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL18_PSEPW3.717e-1946.0250S ribosomal protein L18 OS=Pseudomonas putida (s... [more]
RL18_PSEPK3.717e-1946.0250S ribosomal protein L18 OS=Pseudomonas putida (s... [more]
RL18_PSEPG3.717e-1946.0250S ribosomal protein L18 OS=Pseudomonas putida (s... [more]
RL18_PSEP13.717e-1946.0250S ribosomal protein L18 OS=Pseudomonas putida (s... [more]
RL18_KLEP73.717e-1943.5950S ribosomal protein L18 OS=Klebsiella pneumoniae... [more]
RL18_HAES23.717e-1948.9450S ribosomal protein L18 OS=Haemophilus somnus (s... [more]
RL18_HAES13.717e-1948.9450S ribosomal protein L18 OS=Haemophilus somnus (s... [more]
RL18_ESCF33.717e-1943.5950S ribosomal protein L18 OS=Escherichia fergusoni... [more]
RL18_ECOUT3.717e-1943.5950S ribosomal protein L18 OS=Escherichia coli (str... [more]
RL18_ECOSM3.717e-1943.5950S ribosomal protein L18 OS=Escherichia coli (str... [more]

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Properties
Property NameValue
Genbank descriptionC02003G12SK IF1 Citrus clementina cDNA clone C02003G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288736 ID=CX288736; Name=CX288736; organism=Citrus clementina; type=EST; length=532bp
GAAAGTGTAAGGAGGAAGGGAATGGCAGCCGGTGCGAGCTCAGTTTGGAT
GCTTAATCAGAGTTCATTTCTAGGATCATGTCAGCAACTTTCGAGTGTTT
CAAAATTAGTGGCAAGCAGAAGGCCAAGGCCAGCACCGCCATCTCTTTTC
ATCGTCGAAGCCTCGACCAGACCAAGAACCAAAAGAGAGGACCGCACTGC
CCGCCATTCTCGCATCAAAAAGAAGATTGATGGGACTCCTGAGAGGCCGA
GGCTGTGTGTTTTCCGCTCCAACAAGCATCTCTATGTCCAGGTGATTGAT
GATACTAAGATGCACACACTTGCTTCAGCTTCGACGATGCAAAAGCCCAT
CTCTGACGAGCTTGACTATAGTTCTGGTCCGACGATTGAAGTTTCAAAGA
AGGTGGGTGAAATGATTGCAAAGTCATGTTTGGAGAAAGGGATCACAAAA
GTAGCCTTTGATCGAGGTGGGTACCCATACCATGGACGGATACAAGCCCT
AGCCGATGCAGCTCGGGAATATGGTCTTCAAT
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