CX288736
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_PSEPW (50S ribosomal protein L18 OS=Pseudomonas putida (strain W619) GN=rplR PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 3.717e-19 Identity = 52/113 (46.02%), Postives = 73/113 (64.60%), Query Frame = 1 Query: 193 RTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 R AR +R+K E RLCVFRS++H+Y QVI LASAST+ K + D + I+ + KVG+++A+ G+++VAFDR G+ YHGR++ALADAARE GL+ Sbjct: 10 RRARKARLKMH---ELEVVRLCVFRSSQHIYAQVISADGSKVLASASTLDKDLRD----GATGNIDAATKVGKLVAERAKAAGVSQVAFDRSGFKYHGRVKALADAAREGGLE 115
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_PSEPK (50S ribosomal protein L18 OS=Pseudomonas putida (strain KT2440) GN=rplR PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 3.717e-19 Identity = 52/113 (46.02%), Postives = 73/113 (64.60%), Query Frame = 1 Query: 193 RTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 R AR +R+K E RLCVFRS++H+Y QVI LASAST+ K + D + I+ + KVG+++A+ G+++VAFDR G+ YHGR++ALADAARE GL+ Sbjct: 10 RRARKARLKMH---ELEVVRLCVFRSSQHIYAQVISADGSKVLASASTLDKDLRD----GATGNIDAATKVGKLVAERAKAAGVSQVAFDRSGFKYHGRVKALADAAREGGLE 115
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_PSEPG (50S ribosomal protein L18 OS=Pseudomonas putida (strain GB-1) GN=rplR PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 3.717e-19 Identity = 52/113 (46.02%), Postives = 73/113 (64.60%), Query Frame = 1 Query: 193 RTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 R AR +R+K E RLCVFRS++H+Y QVI LASAST+ K + D + I+ + KVG+++A+ G+++VAFDR G+ YHGR++ALADAARE GL+ Sbjct: 10 RRARKARLKMH---ELEVVRLCVFRSSQHIYAQVISADGSKVLASASTLDKDLRD----GATGNIDAATKVGKLVAERAKAAGVSQVAFDRSGFKYHGRVKALADAAREGGLE 115
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_PSEP1 (50S ribosomal protein L18 OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=rplR PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 3.717e-19 Identity = 52/113 (46.02%), Postives = 73/113 (64.60%), Query Frame = 1 Query: 193 RTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 R AR +R+K E RLCVFRS++H+Y QVI LASAST+ K + D + I+ + KVG+++A+ G+++VAFDR G+ YHGR++ALADAARE GL+ Sbjct: 10 RRARKARLKMH---ELEVVRLCVFRSSQHIYAQVISADGSKVLASASTLDKDLRD----GATGNIDAATKVGKLVAERAKAAGVSQVAFDRSGFKYHGRVKALADAAREGGLE 115
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_KLEP7 (50S ribosomal protein L18 OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=rplR PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 3.717e-19 Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K+ R R +R ++K+ RL V R+ +H+Y QVI L +AST++K I+++L Y+ + + VG+ +A+ LEKGI V+FDR G+ YHGR+QALADAARE GLQ Sbjct: 3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_HAES2 (50S ribosomal protein L18 OS=Haemophilus somnus (strain 2336) GN=rplR PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 3.717e-19 Identity = 46/94 (48.94%), Postives = 67/94 (71.28%), Query Frame = 1 Query: 250 RLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 RL + R+++H+Y QVI LA+AST++K IS+++ Y+ + + VG+++A+ LEKGI VAFDR G+ YHGR+Q+LADAARE GLQ Sbjct: 25 RLVIHRTSRHIYAQVIAPNGSEVLATASTVEKAISEQVKYTGNK--DAAAVVGKIVAERALEKGIKSVAFDRSGFKYHGRVQSLADAAREAGLQ 116
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_HAES1 (50S ribosomal protein L18 OS=Haemophilus somnus (strain 129Pt) GN=rplR PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 3.717e-19 Identity = 46/94 (48.94%), Postives = 67/94 (71.28%), Query Frame = 1 Query: 250 RLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 RL + R+++H+Y QVI LA+AST++K IS+++ Y+ + + VG+++A+ LEKGI VAFDR G+ YHGR+Q+LADAARE GLQ Sbjct: 25 RLVIHRTSRHIYAQVIAPNGSEVLATASTVEKAISEQVKYTGNK--DAAAVVGKIVAERALEKGIKSVAFDRSGFKYHGRVQSLADAAREAGLQ 116
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_ESCF3 (50S ribosomal protein L18 OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=rplR PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 3.717e-19 Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K+ R R +R ++K+ RL V R+ +H+Y QVI L +AST++K I+++L Y+ + + VG+ +A+ LEKGI V+FDR G+ YHGR+QALADAARE GLQ Sbjct: 3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_ECOUT (50S ribosomal protein L18 OS=Escherichia coli (strain UTI89 / UPEC) GN=rplR PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 3.717e-19 Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K+ R R +R ++K+ RL V R+ +H+Y QVI L +AST++K I+++L Y+ + + VG+ +A+ LEKGI V+FDR G+ YHGR+QALADAARE GLQ Sbjct: 3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_ECOSM (50S ribosomal protein L18 OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=rplR PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 3.717e-19 Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K+ R R +R ++K+ RL V R+ +H+Y QVI L +AST++K I+++L Y+ + + VG+ +A+ LEKGI V+FDR G+ YHGR+QALADAARE GLQ Sbjct: 3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116 The following BLAST results are available for this feature:
BLAST of CX288736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288736 ID=CX288736; Name=CX288736; organism=Citrus clementina; type=EST; length=532bpback to top |