CX288736

Overview
NameCX288736
Unique NameCX288736
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_ECOSE (50S ribosomal protein L18 OS=Escherichia coli (strain SE11) GN=rplR PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.717e-19
Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1 
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R ++K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQ
Sbjct:    3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116
[Close]
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_ECOLU (50S ribosomal protein L18 OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=rplR PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.717e-19
Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1 
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R ++K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQ
Sbjct:    3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116
[Close]
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_ECOLI (50S ribosomal protein L18 OS=Escherichia coli (strain K12) GN=rplR PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.717e-19
Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1 
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R ++K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQ
Sbjct:    3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116
[Close]
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_ECOLC (50S ribosomal protein L18 OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=rplR PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.717e-19
Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1 
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R ++K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQ
Sbjct:    3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116
[Close]
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_ECOL6 (50S ribosomal protein L18 OS=Escherichia coli O6 GN=rplR PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.717e-19
Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1 
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R ++K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQ
Sbjct:    3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116
[Close]
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_ECOL5 (50S ribosomal protein L18 OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=rplR PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.717e-19
Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1 
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R ++K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQ
Sbjct:    3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116
[Close]
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_ECOK1 (50S ribosomal protein L18 OS=Escherichia coli O1:K1 / APEC GN=rplR PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.717e-19
Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1 
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R ++K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQ
Sbjct:    3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116
[Close]
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_ECOHS (50S ribosomal protein L18 OS=Escherichia coli O9:H4 (strain HS) GN=rplR PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.717e-19
Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1 
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R ++K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQ
Sbjct:    3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116
[Close]
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_ECODH (50S ribosomal protein L18 OS=Escherichia coli (strain K12 / DH10B) GN=rplR PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.717e-19
Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1 
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R ++K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQ
Sbjct:    3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116
[Close]
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_ECOBW (50S ribosomal protein L18 OS=Escherichia coli (strain K12 / BW2952) GN=rplR PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.717e-19
Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1 
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R ++K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQ
Sbjct:    3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116
The following BLAST results are available for this feature:
BLAST of CX288736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL18_ECOSE3.717e-1943.5950S ribosomal protein L18 OS=Escherichia coli (str... [more]
RL18_ECOLU3.717e-1943.5950S ribosomal protein L18 OS=Escherichia coli O17:... [more]
RL18_ECOLI3.717e-1943.5950S ribosomal protein L18 OS=Escherichia coli (str... [more]
RL18_ECOLC3.717e-1943.5950S ribosomal protein L18 OS=Escherichia coli (str... [more]
RL18_ECOL63.717e-1943.5950S ribosomal protein L18 OS=Escherichia coli O6 G... [more]
RL18_ECOL53.717e-1943.5950S ribosomal protein L18 OS=Escherichia coli O6:K... [more]
RL18_ECOK13.717e-1943.5950S ribosomal protein L18 OS=Escherichia coli O1:K... [more]
RL18_ECOHS3.717e-1943.5950S ribosomal protein L18 OS=Escherichia coli O9:H... [more]
RL18_ECODH3.717e-1943.5950S ribosomal protein L18 OS=Escherichia coli (str... [more]
RL18_ECOBW3.717e-1943.5950S ribosomal protein L18 OS=Escherichia coli (str... [more]

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Properties
Property NameValue
Genbank descriptionC02003G12SK IF1 Citrus clementina cDNA clone C02003G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288736 ID=CX288736; Name=CX288736; organism=Citrus clementina; type=EST; length=532bp
GAAAGTGTAAGGAGGAAGGGAATGGCAGCCGGTGCGAGCTCAGTTTGGAT
GCTTAATCAGAGTTCATTTCTAGGATCATGTCAGCAACTTTCGAGTGTTT
CAAAATTAGTGGCAAGCAGAAGGCCAAGGCCAGCACCGCCATCTCTTTTC
ATCGTCGAAGCCTCGACCAGACCAAGAACCAAAAGAGAGGACCGCACTGC
CCGCCATTCTCGCATCAAAAAGAAGATTGATGGGACTCCTGAGAGGCCGA
GGCTGTGTGTTTTCCGCTCCAACAAGCATCTCTATGTCCAGGTGATTGAT
GATACTAAGATGCACACACTTGCTTCAGCTTCGACGATGCAAAAGCCCAT
CTCTGACGAGCTTGACTATAGTTCTGGTCCGACGATTGAAGTTTCAAAGA
AGGTGGGTGAAATGATTGCAAAGTCATGTTTGGAGAAAGGGATCACAAAA
GTAGCCTTTGATCGAGGTGGGTACCCATACCATGGACGGATACAAGCCCT
AGCCGATGCAGCTCGGGAATATGGTCTTCAAT
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