CX288736

Overview
NameCX288736
Unique NameCX288736
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_CHLPD (50S ribosomal protein L18 OS=Chlorobium phaeobacteroides (strain DSM 266) GN=rplR PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.717e-19
Identity = 52/117 (44.44%), Postives = 70/117 (59.83%), Query Frame = 1
Query:  190 DRTARHSRIKK----KIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528
            D+ +R  +IK     K+ GT  +PRLCV+RS   +Y Q+IDD    T+ + S+M K    E     G   EV   VG+ +A+  L KGIT V FDR G+ YHGR++ALA+ ARE GL
Sbjct:    5 DKASRRQKIKDRSRVKVHGTMAKPRLCVYRSLSQIYAQLIDDDNGKTIMAVSSMSK----ENKALEGTKSEVCTVVGKQLAEMALAKGITTVVFDRNGFRYHGRLKALAEGAREAGL 117          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_AZOVD (50S ribosomal protein L18 OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=rplR PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.717e-19
Identity = 54/113 (47.79%), Postives = 74/113 (65.49%), Query Frame = 1
Query:  193 RTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            R AR +R+K +     E  RLCV RS++H+Y QVI       LASAST+ K    EL  ++   +E +KKVG ++A+     G+T+VAFDR G+ YHGR++ALADAARE GL+
Sbjct:   10 RRARKTRLKMR---ELEVVRLCVHRSSQHIYAQVITADGGKVLASASTLDK----ELRGAATGNVEAAKKVGLLVAERAKAAGVTQVAFDRSGFKYHGRVKALADAAREGGLE 115          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SALTY (50S ribosomal protein L18 OS=Salmonella typhimurium GN=rplR PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19
Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R ++K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQ
Sbjct:    3 KKSARIRRATRARRKLKELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SALTI (50S ribosomal protein L18 OS=Salmonella typhi GN=rplR PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19
Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R ++K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQ
Sbjct:    3 KKSARIRRATRARRKLKELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SALSV (50S ribosomal protein L18 OS=Salmonella schwarzengrund (strain CVM19633) GN=rplR PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19
Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R ++K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQ
Sbjct:    3 KKSARIRRATRARRKLKELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SALPK (50S ribosomal protein L18 OS=Salmonella paratyphi A (strain AKU_12601) GN=rplR PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19
Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R ++K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQ
Sbjct:    3 KKSARIRRATRARRKLKELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SALPC (50S ribosomal protein L18 OS=Salmonella paratyphi C (strain RKS4594) GN=rplR PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19
Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R ++K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQ
Sbjct:    3 KKSARIRRATRARRKLKELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SALPB (50S ribosomal protein L18 OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rplR PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19
Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R ++K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQ
Sbjct:    3 KKSARIRRATRARRKLKELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SALPA (50S ribosomal protein L18 OS=Salmonella paratyphi A GN=rplR PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19
Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R ++K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQ
Sbjct:    3 KKSARIRRATRARRKLKELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SALNS (50S ribosomal protein L18 OS=Salmonella newport (strain SL254) GN=rplR PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19
Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R ++K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQ
Sbjct:    3 KKSARIRRATRARRKLKELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116          
The following BLAST results are available for this feature:
BLAST of CX288736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL18_CHLPD3.717e-1944.4450S ribosomal protein L18 OS=Chlorobium phaeobacte... [more]
RL18_AZOVD3.717e-1947.7950S ribosomal protein L18 OS=Azotobacter vinelandi... [more]
RL18_SALTY4.855e-1943.5950S ribosomal protein L18 OS=Salmonella typhimuriu... [more]
RL18_SALTI4.855e-1943.5950S ribosomal protein L18 OS=Salmonella typhi GN=r... [more]
RL18_SALSV4.855e-1943.5950S ribosomal protein L18 OS=Salmonella schwarzeng... [more]
RL18_SALPK4.855e-1943.5950S ribosomal protein L18 OS=Salmonella paratyphi ... [more]
RL18_SALPC4.855e-1943.5950S ribosomal protein L18 OS=Salmonella paratyphi ... [more]
RL18_SALPB4.855e-1943.5950S ribosomal protein L18 OS=Salmonella paratyphi ... [more]
RL18_SALPA4.855e-1943.5950S ribosomal protein L18 OS=Salmonella paratyphi ... [more]
RL18_SALNS4.855e-1943.5950S ribosomal protein L18 OS=Salmonella newport (s... [more]

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Properties
Property NameValue
Genbank descriptionC02003G12SK IF1 Citrus clementina cDNA clone C02003G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288736 ID=CX288736; Name=CX288736; organism=Citrus clementina; type=EST; length=532bp
GAAAGTGTAAGGAGGAAGGGAATGGCAGCCGGTGCGAGCTCAGTTTGGAT
GCTTAATCAGAGTTCATTTCTAGGATCATGTCAGCAACTTTCGAGTGTTT
CAAAATTAGTGGCAAGCAGAAGGCCAAGGCCAGCACCGCCATCTCTTTTC
ATCGTCGAAGCCTCGACCAGACCAAGAACCAAAAGAGAGGACCGCACTGC
CCGCCATTCTCGCATCAAAAAGAAGATTGATGGGACTCCTGAGAGGCCGA
GGCTGTGTGTTTTCCGCTCCAACAAGCATCTCTATGTCCAGGTGATTGAT
GATACTAAGATGCACACACTTGCTTCAGCTTCGACGATGCAAAAGCCCAT
CTCTGACGAGCTTGACTATAGTTCTGGTCCGACGATTGAAGTTTCAAAGA
AGGTGGGTGAAATGATTGCAAAGTCATGTTTGGAGAAAGGGATCACAAAA
GTAGCCTTTGATCGAGGTGGGTACCCATACCATGGACGGATACAAGCCCT
AGCCGATGCAGCTCGGGAATATGGTCTTCAAT
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