CX288736
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_CHLPD (50S ribosomal protein L18 OS=Chlorobium phaeobacteroides (strain DSM 266) GN=rplR PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 3.717e-19 Identity = 52/117 (44.44%), Postives = 70/117 (59.83%), Query Frame = 1 Query: 190 DRTARHSRIKK----KIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528 D+ +R +IK K+ GT +PRLCV+RS +Y Q+IDD T+ + S+M K E G EV VG+ +A+ L KGIT V FDR G+ YHGR++ALA+ ARE GL Sbjct: 5 DKASRRQKIKDRSRVKVHGTMAKPRLCVYRSLSQIYAQLIDDDNGKTIMAVSSMSK----ENKALEGTKSEVCTVVGKQLAEMALAKGITTVVFDRNGFRYHGRLKALAEGAREAGL 117
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_AZOVD (50S ribosomal protein L18 OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=rplR PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 3.717e-19 Identity = 54/113 (47.79%), Postives = 74/113 (65.49%), Query Frame = 1 Query: 193 RTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 R AR +R+K + E RLCV RS++H+Y QVI LASAST+ K EL ++ +E +KKVG ++A+ G+T+VAFDR G+ YHGR++ALADAARE GL+ Sbjct: 10 RRARKTRLKMR---ELEVVRLCVHRSSQHIYAQVITADGGKVLASASTLDK----ELRGAATGNVEAAKKVGLLVAERAKAAGVTQVAFDRSGFKYHGRVKALADAAREGGLE 115
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SALTY (50S ribosomal protein L18 OS=Salmonella typhimurium GN=rplR PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19 Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K+ R R +R ++K+ RL V R+ +H+Y QVI L +AST++K I+++L Y+ + + VG+ +A+ LEKGI V+FDR G+ YHGR+QALADAARE GLQ Sbjct: 3 KKSARIRRATRARRKLKELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SALTI (50S ribosomal protein L18 OS=Salmonella typhi GN=rplR PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19 Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K+ R R +R ++K+ RL V R+ +H+Y QVI L +AST++K I+++L Y+ + + VG+ +A+ LEKGI V+FDR G+ YHGR+QALADAARE GLQ Sbjct: 3 KKSARIRRATRARRKLKELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SALSV (50S ribosomal protein L18 OS=Salmonella schwarzengrund (strain CVM19633) GN=rplR PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19 Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K+ R R +R ++K+ RL V R+ +H+Y QVI L +AST++K I+++L Y+ + + VG+ +A+ LEKGI V+FDR G+ YHGR+QALADAARE GLQ Sbjct: 3 KKSARIRRATRARRKLKELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SALPK (50S ribosomal protein L18 OS=Salmonella paratyphi A (strain AKU_12601) GN=rplR PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19 Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K+ R R +R ++K+ RL V R+ +H+Y QVI L +AST++K I+++L Y+ + + VG+ +A+ LEKGI V+FDR G+ YHGR+QALADAARE GLQ Sbjct: 3 KKSARIRRATRARRKLKELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SALPC (50S ribosomal protein L18 OS=Salmonella paratyphi C (strain RKS4594) GN=rplR PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19 Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K+ R R +R ++K+ RL V R+ +H+Y QVI L +AST++K I+++L Y+ + + VG+ +A+ LEKGI V+FDR G+ YHGR+QALADAARE GLQ Sbjct: 3 KKSARIRRATRARRKLKELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SALPB (50S ribosomal protein L18 OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rplR PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19 Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K+ R R +R ++K+ RL V R+ +H+Y QVI L +AST++K I+++L Y+ + + VG+ +A+ LEKGI V+FDR G+ YHGR+QALADAARE GLQ Sbjct: 3 KKSARIRRATRARRKLKELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SALPA (50S ribosomal protein L18 OS=Salmonella paratyphi A GN=rplR PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19 Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K+ R R +R ++K+ RL V R+ +H+Y QVI L +AST++K I+++L Y+ + + VG+ +A+ LEKGI V+FDR G+ YHGR+QALADAARE GLQ Sbjct: 3 KKSARIRRATRARRKLKELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SALNS (50S ribosomal protein L18 OS=Salmonella newport (strain SL254) GN=rplR PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19 Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K+ R R +R ++K+ RL V R+ +H+Y QVI L +AST++K I+++L Y+ + + VG+ +A+ LEKGI V+FDR G+ YHGR+QALADAARE GLQ Sbjct: 3 KKSARIRRATRARRKLKELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116 The following BLAST results are available for this feature:
BLAST of CX288736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288736 ID=CX288736; Name=CX288736; organism=Citrus clementina; type=EST; length=532bpback to top |