CX288736
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SALHS (50S ribosomal protein L18 OS=Salmonella heidelberg (strain SL476) GN=rplR PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19 Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K+ R R +R ++K+ RL V R+ +H+Y QVI L +AST++K I+++L Y+ + + VG+ +A+ LEKGI V+FDR G+ YHGR+QALADAARE GLQ Sbjct: 3 KKSARIRRATRARRKLKELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SALG2 (50S ribosomal protein L18 OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=rplR PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19 Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K+ R R +R ++K+ RL V R+ +H+Y QVI L +AST++K I+++L Y+ + + VG+ +A+ LEKGI V+FDR G+ YHGR+QALADAARE GLQ Sbjct: 3 KKSARIRRATRARRKLKELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SALEP (50S ribosomal protein L18 OS=Salmonella enteritidis PT4 (strain P125109) GN=rplR PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19 Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K+ R R +R ++K+ RL V R+ +H+Y QVI L +AST++K I+++L Y+ + + VG+ +A+ LEKGI V+FDR G+ YHGR+QALADAARE GLQ Sbjct: 3 KKSARIRRATRARRKLKELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SALDC (50S ribosomal protein L18 OS=Salmonella dublin (strain CT_02021853) GN=rplR PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19 Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K+ R R +R ++K+ RL V R+ +H+Y QVI L +AST++K I+++L Y+ + + VG+ +A+ LEKGI V+FDR G+ YHGR+QALADAARE GLQ Sbjct: 3 KKSARIRRATRARRKLKELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SALCH (50S ribosomal protein L18 OS=Salmonella choleraesuis GN=rplR PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19 Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K+ R R +R ++K+ RL V R+ +H+Y QVI L +AST++K I+++L Y+ + + VG+ +A+ LEKGI V+FDR G+ YHGR+QALADAARE GLQ Sbjct: 3 KKSARIRRATRARRKLKELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SALAR (50S ribosomal protein L18 OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=rplR PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19 Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K+ R R +R ++K+ RL V R+ +H+Y QVI L +AST++K I+++L Y+ + + VG+ +A+ LEKGI V+FDR G+ YHGR+QALADAARE GLQ Sbjct: 3 KKSARIRRATRARRKLKELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SALA4 (50S ribosomal protein L18 OS=Salmonella agona (strain SL483) GN=rplR PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19 Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K+ R R +R ++K+ RL V R+ +H+Y QVI L +AST++K I+++L Y+ + + VG+ +A+ LEKGI V+FDR G+ YHGR+QALADAARE GLQ Sbjct: 3 KKSARIRRATRARRKLKELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_PSEPF (50S ribosomal protein L18 OS=Pseudomonas fluorescens (strain Pf0-1) GN=rplR PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19 Identity = 52/113 (46.02%), Postives = 72/113 (63.72%), Query Frame = 1 Query: 193 RTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 R AR +R+K E RLCVFRS++H+Y QVI LASAST+ K + D + I+ + KVG+++A G+++VAFDR G+ YHGR++ALADAARE GL+ Sbjct: 10 RRARKARLKMH---ELEVVRLCVFRSSQHIYAQVISADGNKVLASASTLDKELRD----GATGNIDAATKVGQLVATRAKAAGVSQVAFDRSGFKYHGRVKALADAAREAGLE 115
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_PSEF5 (50S ribosomal protein L18 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=rplR PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19 Identity = 52/113 (46.02%), Postives = 72/113 (63.72%), Query Frame = 1 Query: 193 RTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 R AR +R+K E RLCVFRS++H+Y QVI LASAST+ K + D + I+ + KVG+++A G+++VAFDR G+ YHGR++ALADAARE GL+ Sbjct: 10 RRARKARLKMH---ELEVVRLCVFRSSQHIYAQVISADGNKVLASASTLDKELRD----GATGNIDAATKVGQLVATRAKAAGVSQVAFDRSGFKYHGRVKALADAAREAGLE 115
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_ENTS8 (50S ribosomal protein L18 OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=rplR PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19 Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K+ R R +R ++K+ RL V R+ +H+Y QVI L +AST++K I+++L Y+ + + VG+ +A+ LEKGI V+FDR G+ YHGR+QALADAARE GLQ Sbjct: 3 KKSARIRRATRARRKLKELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116 The following BLAST results are available for this feature:
BLAST of CX288736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288736 ID=CX288736; Name=CX288736; organism=Citrus clementina; type=EST; length=532bpback to top |