CX288736

Overview
NameCX288736
Unique NameCX288736
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SALHS (50S ribosomal protein L18 OS=Salmonella heidelberg (strain SL476) GN=rplR PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19
Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R ++K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQ
Sbjct:    3 KKSARIRRATRARRKLKELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SALG2 (50S ribosomal protein L18 OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=rplR PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19
Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R ++K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQ
Sbjct:    3 KKSARIRRATRARRKLKELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SALEP (50S ribosomal protein L18 OS=Salmonella enteritidis PT4 (strain P125109) GN=rplR PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19
Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R ++K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQ
Sbjct:    3 KKSARIRRATRARRKLKELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SALDC (50S ribosomal protein L18 OS=Salmonella dublin (strain CT_02021853) GN=rplR PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19
Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R ++K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQ
Sbjct:    3 KKSARIRRATRARRKLKELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SALCH (50S ribosomal protein L18 OS=Salmonella choleraesuis GN=rplR PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19
Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R ++K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQ
Sbjct:    3 KKSARIRRATRARRKLKELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SALAR (50S ribosomal protein L18 OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=rplR PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19
Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R ++K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQ
Sbjct:    3 KKSARIRRATRARRKLKELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SALA4 (50S ribosomal protein L18 OS=Salmonella agona (strain SL483) GN=rplR PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19
Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R ++K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQ
Sbjct:    3 KKSARIRRATRARRKLKELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_PSEPF (50S ribosomal protein L18 OS=Pseudomonas fluorescens (strain Pf0-1) GN=rplR PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19
Identity = 52/113 (46.02%), Postives = 72/113 (63.72%), Query Frame = 1
Query:  193 RTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            R AR +R+K       E  RLCVFRS++H+Y QVI       LASAST+ K + D     +   I+ + KVG+++A      G+++VAFDR G+ YHGR++ALADAARE GL+
Sbjct:   10 RRARKARLKMH---ELEVVRLCVFRSSQHIYAQVISADGNKVLASASTLDKELRD----GATGNIDAATKVGQLVATRAKAAGVSQVAFDRSGFKYHGRVKALADAAREAGLE 115          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_PSEF5 (50S ribosomal protein L18 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=rplR PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19
Identity = 52/113 (46.02%), Postives = 72/113 (63.72%), Query Frame = 1
Query:  193 RTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            R AR +R+K       E  RLCVFRS++H+Y QVI       LASAST+ K + D     +   I+ + KVG+++A      G+++VAFDR G+ YHGR++ALADAARE GL+
Sbjct:   10 RRARKARLKMH---ELEVVRLCVFRSSQHIYAQVISADGNKVLASASTLDKELRD----GATGNIDAATKVGQLVATRAKAAGVSQVAFDRSGFKYHGRVKALADAAREAGLE 115          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_ENTS8 (50S ribosomal protein L18 OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=rplR PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19
Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R ++K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQ
Sbjct:    3 KKSARIRRATRARRKLKELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116          
The following BLAST results are available for this feature:
BLAST of CX288736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL18_SALHS4.855e-1943.5950S ribosomal protein L18 OS=Salmonella heidelberg... [more]
RL18_SALG24.855e-1943.5950S ribosomal protein L18 OS=Salmonella gallinarum... [more]
RL18_SALEP4.855e-1943.5950S ribosomal protein L18 OS=Salmonella enteritidi... [more]
RL18_SALDC4.855e-1943.5950S ribosomal protein L18 OS=Salmonella dublin (st... [more]
RL18_SALCH4.855e-1943.5950S ribosomal protein L18 OS=Salmonella choleraesu... [more]
RL18_SALAR4.855e-1943.5950S ribosomal protein L18 OS=Salmonella arizonae (... [more]
RL18_SALA44.855e-1943.5950S ribosomal protein L18 OS=Salmonella agona (str... [more]
RL18_PSEPF4.855e-1946.0250S ribosomal protein L18 OS=Pseudomonas fluoresce... [more]
RL18_PSEF54.855e-1946.0250S ribosomal protein L18 OS=Pseudomonas fluoresce... [more]
RL18_ENTS84.855e-1943.5950S ribosomal protein L18 OS=Enterobacter sakazaki... [more]

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Properties
Property NameValue
Genbank descriptionC02003G12SK IF1 Citrus clementina cDNA clone C02003G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288736 ID=CX288736; Name=CX288736; organism=Citrus clementina; type=EST; length=532bp
GAAAGTGTAAGGAGGAAGGGAATGGCAGCCGGTGCGAGCTCAGTTTGGAT
GCTTAATCAGAGTTCATTTCTAGGATCATGTCAGCAACTTTCGAGTGTTT
CAAAATTAGTGGCAAGCAGAAGGCCAAGGCCAGCACCGCCATCTCTTTTC
ATCGTCGAAGCCTCGACCAGACCAAGAACCAAAAGAGAGGACCGCACTGC
CCGCCATTCTCGCATCAAAAAGAAGATTGATGGGACTCCTGAGAGGCCGA
GGCTGTGTGTTTTCCGCTCCAACAAGCATCTCTATGTCCAGGTGATTGAT
GATACTAAGATGCACACACTTGCTTCAGCTTCGACGATGCAAAAGCCCAT
CTCTGACGAGCTTGACTATAGTTCTGGTCCGACGATTGAAGTTTCAAAGA
AGGTGGGTGAAATGATTGCAAAGTCATGTTTGGAGAAAGGGATCACAAAA
GTAGCCTTTGATCGAGGTGGGTACCCATACCATGGACGGATACAAGCCCT
AGCCGATGCAGCTCGGGAATATGGTCTTCAAT
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