CX288736

Overview
NameCX288736
Unique NameCX288736
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_CHLP8 (50S ribosomal protein L18 OS=Chlorobaculum parvum (strain NCIB 8327) GN=rplR PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19
Identity = 52/117 (44.44%), Postives = 69/117 (58.97%), Query Frame = 1
Query:  190 DRTARHSRIKKK----IDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528
            D+ AR  +IK +    + G   RPRLCV+RS   +Y Q+IDD    TL + STM K  +       G   E S  VG+ +A+  + +GI+ V FDR G+ YHGRI+ALAD ARE GL
Sbjct:    5 DKAARRQKIKARSRATVHGNATRPRLCVYRSLSQIYAQLIDDESGKTLMAVSTMSKDNAG----LQGSKSERSAAVGKQLAEKAIAQGISNVVFDRNGFRYHGRIKALADGAREAGL 117          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_BARBK (50S ribosomal protein L18 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rplR PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19
Identity = 50/110 (45.45%), Postives = 74/110 (67.27%), Query Frame = 1
Query:  202 RHSRIKKKIDGTPE-RPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528
            R  R++++I      RPRL V+RSN+++Y Q+IDD +  TLASA T+++ +   L   SG   + +  VG++IA+   + GI +V FDRG Y YHGR++ALA+AARE GL
Sbjct:   11 RAKRVRRQIKAAANGRPRLSVYRSNQNIYAQIIDDVRGCTLASACTLEEGMKKSL--RSGSDKKAAFAVGKLIAERAKKSGINEVVFDRGAYVYHGRVKALAEAAREGGL 118          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_AZOPC (50S ribosomal protein L18 OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=rplR PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19
Identity = 55/112 (49.11%), Postives = 70/112 (62.50%), Query Frame = 1
Query:  211 RIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKK-----VGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            RI+K I GT ERPRL VFRSN+ +Y Q+IDD+  +TL  AS++            G T +VSKK      G ++A+   E GI  V FDR GY YHGR++ LADAARE GL+
Sbjct:   14 RIRKYIFGTAERPRLTVFRSNRQIYSQLIDDSTGNTLVVASSL------------GITEKVSKKKIAYRTGVLVAQKAKEVGIRSVVFDRNGYLYHGRVKELADAAREEGLK 113          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_VIBPA (50S ribosomal protein L18 OS=Vibrio parahaemolyticus GN=rplR PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.341e-19
Identity = 49/117 (41.88%), Postives = 76/117 (64.96%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R ++KI       RL V R+ +H+Y QVI       +A+AST++K I +++ Y+    ++ +K VG+ +A+  LEKG+T VAFDR G+ YHGR+ ALA++ARE GL+
Sbjct:    3 KKASRIRRATRARRKI-AELGATRLVVHRTPRHVYAQVIAANGSEVIAAASTVEKAIREQVKYTGN--VDAAKAVGKAVAERALEKGVTAVAFDRSGFQYHGRVAALAESAREAGLK 116          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_VIBHB (50S ribosomal protein L18 OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=rplR PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.341e-19
Identity = 49/117 (41.88%), Postives = 76/117 (64.96%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R ++KI       RL V R+ +H+Y QVI       +A+AST++K I +++ Y+    ++ +K VG+ +A+  LEKG+T VAFDR G+ YHGR+ ALA++ARE GL+
Sbjct:    3 KKASRIRRATRARRKI-AELGATRLVVHRTPRHVYAQVIAANGSEVIAAASTVEKAIREQVKYTGN--VDAAKAVGKAVAERALEKGVTAVAFDRSGFQYHGRVAALAESAREAGLK 116          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SHEB9 (50S ribosomal protein L18 OS=Shewanella baltica (strain OS195) GN=rplR PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.341e-19
Identity = 52/117 (44.44%), Postives = 76/117 (64.96%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R +KKI       RL V R+ +H+Y QVI+  +   LA+AST++K + + L   S   ++ +K VG+ +A+  +EKG+T VAFDR G+ YHGR+ ALADAARE GL+
Sbjct:    3 KKTSRLRRATRARKKIQELGVN-RLVVHRTPRHIYAQVINP-EAQVLAAASTVEKAVKELL--KSTGNVDAAKAVGKFVAERAIEKGVTSVAFDRSGFKYHGRVAALADAAREAGLK 115          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SHEB8 (50S ribosomal protein L18 OS=Shewanella baltica (strain OS185) GN=rplR PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.341e-19
Identity = 52/117 (44.44%), Postives = 76/117 (64.96%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R +KKI       RL V R+ +H+Y QVI+  +   LA+AST++K + + L   S   ++ +K VG+ +A+  +EKG+T VAFDR G+ YHGR+ ALADAARE GL+
Sbjct:    3 KKTSRLRRATRARKKIQELGVN-RLVVHRTPRHIYAQVINP-EAQVLAAASTVEKAVKELL--KSTGNVDAAKAVGKFVAERAIEKGVTSVAFDRSGFKYHGRVAALADAAREAGLK 115          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SHEB5 (50S ribosomal protein L18 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=rplR PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.341e-19
Identity = 52/117 (44.44%), Postives = 76/117 (64.96%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R +KKI       RL V R+ +H+Y QVI+  +   LA+AST++K + + L   S   ++ +K VG+ +A+  +EKG+T VAFDR G+ YHGR+ ALADAARE GL+
Sbjct:    3 KKTSRLRRATRARKKIQELGVN-RLVVHRTPRHIYAQVINP-EAQVLAAASTVEKAVKELL--KSTGNVDAAKAVGKFVAERAIEKGVTSVAFDRSGFKYHGRVAALADAAREAGLK 115          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SHEB2 (50S ribosomal protein L18 OS=Shewanella baltica (strain OS223) GN=rplR PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.341e-19
Identity = 52/117 (44.44%), Postives = 76/117 (64.96%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  R +R +KKI       RL V R+ +H+Y QVI+  +   LA+AST++K + + L   S   ++ +K VG+ +A+  +EKG+T VAFDR G+ YHGR+ ALADAARE GL+
Sbjct:    3 KKTSRLRRATRARKKIQELGVN-RLVVHRTPRHIYAQVINP-EAQVLAAASTVEKAVKELL--KSTGNVDAAKAVGKFVAERAIEKGVTSVAFDRSGFKYHGRVAALADAAREAGLK 115          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_METSB (50S ribosomal protein L18 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rplR PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.341e-19
Identity = 50/117 (42.74%), Postives = 76/117 (64.96%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPE-RPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528
            K  DR  R +R+++ +      +PRL VFRS+K +Y Q+IDD    TLA+AS+++K   + L   +G  +E ++ +G++IA+     G+T V FDRG Y YHGR++ALA+ ARE GL
Sbjct:    6 KATDR--RRARVRRTLRARAYGKPRLSVFRSSKQIYCQIIDDEAGLTLAAASSLEKSARESL--KTGADVEAARAIGKLIAERATAAGVTDVVFDRGSYLYHGRVKALAEGAREGGL 118          
The following BLAST results are available for this feature:
BLAST of CX288736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL18_CHLP84.855e-1944.4450S ribosomal protein L18 OS=Chlorobaculum parvum ... [more]
RL18_BARBK4.855e-1945.4550S ribosomal protein L18 OS=Bartonella bacillifor... [more]
RL18_AZOPC4.855e-1949.1150S ribosomal protein L18 OS=Azobacteroides pseudo... [more]
RL18_VIBPA6.341e-1941.8850S ribosomal protein L18 OS=Vibrio parahaemolytic... [more]
RL18_VIBHB6.341e-1941.8850S ribosomal protein L18 OS=Vibrio harveyi (strai... [more]
RL18_SHEB96.341e-1944.4450S ribosomal protein L18 OS=Shewanella baltica (s... [more]
RL18_SHEB86.341e-1944.4450S ribosomal protein L18 OS=Shewanella baltica (s... [more]
RL18_SHEB56.341e-1944.4450S ribosomal protein L18 OS=Shewanella baltica (s... [more]
RL18_SHEB26.341e-1944.4450S ribosomal protein L18 OS=Shewanella baltica (s... [more]
RL18_METSB6.341e-1942.7450S ribosomal protein L18 OS=Methylocella silvestr... [more]

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Properties
Property NameValue
Genbank descriptionC02003G12SK IF1 Citrus clementina cDNA clone C02003G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288736 ID=CX288736; Name=CX288736; organism=Citrus clementina; type=EST; length=532bp
GAAAGTGTAAGGAGGAAGGGAATGGCAGCCGGTGCGAGCTCAGTTTGGAT
GCTTAATCAGAGTTCATTTCTAGGATCATGTCAGCAACTTTCGAGTGTTT
CAAAATTAGTGGCAAGCAGAAGGCCAAGGCCAGCACCGCCATCTCTTTTC
ATCGTCGAAGCCTCGACCAGACCAAGAACCAAAAGAGAGGACCGCACTGC
CCGCCATTCTCGCATCAAAAAGAAGATTGATGGGACTCCTGAGAGGCCGA
GGCTGTGTGTTTTCCGCTCCAACAAGCATCTCTATGTCCAGGTGATTGAT
GATACTAAGATGCACACACTTGCTTCAGCTTCGACGATGCAAAAGCCCAT
CTCTGACGAGCTTGACTATAGTTCTGGTCCGACGATTGAAGTTTCAAAGA
AGGTGGGTGAAATGATTGCAAAGTCATGTTTGGAGAAAGGGATCACAAAA
GTAGCCTTTGATCGAGGTGGGTACCCATACCATGGACGGATACAAGCCCT
AGCCGATGCAGCTCGGGAATATGGTCTTCAAT
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