CX288736

Overview
NameCX288736
Unique NameCX288736
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_BACC3 (50S ribosomal protein L18 OS=Bacillus cereus (strain 03BB102) GN=rplR PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.034e-29
Identity = 65/117 (55.56%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K   R  RH+R++ K+ GT ERPRL VFRSN+H+Y QVIDD    TL SAST+ K    +L  +    IE + KVGE +AK  +EKG+ +V FDRGGY YHGR++ALA+AARE GLQ
Sbjct:    7 KNATRKKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDK----DLALNGTSNIEAATKVGESVAKRAVEKGVKEVVFDRGGYLYHGRVKALAEAAREAGLQ 119          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_BACC1 (50S ribosomal protein L18 OS=Bacillus cereus (strain ATCC 10987) GN=rplR PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.034e-29
Identity = 65/117 (55.56%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K   R  RH+R++ K+ GT ERPRL VFRSN+H+Y QVIDD    TL SAST+ K    +L  +    IE + KVGE +AK  +EKG+ +V FDRGGY YHGR++ALA+AARE GLQ
Sbjct:    7 KNATRKKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDK----DLALNGTSNIEAATKVGESVAKRAVEKGVKEVVFDRGGYLYHGRVKALAEAAREAGLQ 119          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_BACAN (50S ribosomal protein L18 OS=Bacillus anthracis GN=rplR PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.034e-29
Identity = 65/117 (55.56%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K   R  RH+R++ K+ GT ERPRL VFRSN+H+Y QVIDD    TL SAST+ K    +L  +    IE + KVGE +AK  +EKG+ +V FDRGGY YHGR++ALA+AARE GLQ
Sbjct:    7 KNATRKKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDK----DLALNGTSNIEAATKVGESVAKRAVEKGVKEVVFDRGGYLYHGRVKALAEAAREAGLQ 119          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_BACAC (50S ribosomal protein L18 OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=rplR PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.034e-29
Identity = 65/117 (55.56%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K   R  RH+R++ K+ GT ERPRL VFRSN+H+Y QVIDD    TL SAST+ K    +L  +    IE + KVGE +AK  +EKG+ +V FDRGGY YHGR++ALA+AARE GLQ
Sbjct:    7 KNATRKKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDK----DLALNGTSNIEAATKVGESVAKRAVEKGVKEVVFDRGGYLYHGRVKALAEAAREAGLQ 119          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_BACAA (50S ribosomal protein L18 OS=Bacillus anthracis (strain A0248) GN=rplR PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.034e-29
Identity = 65/117 (55.56%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K   R  RH+R++ K+ GT ERPRL VFRSN+H+Y QVIDD    TL SAST+ K    +L  +    IE + KVGE +AK  +EKG+ +V FDRGGY YHGR++ALA+AARE GLQ
Sbjct:    7 KNATRKKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDK----DLALNGTSNIEAATKVGESVAKRAVEKGVKEVVFDRGGYLYHGRVKALAEAAREAGLQ 119          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RK18_CYAPA (50S ribosomal protein L18, cyanelle OS=Cyanophora paradoxa GN=rpl18 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.034e-29
Identity = 62/118 (52.54%), Postives = 87/118 (73.73%), Query Frame = 1
Query:  178 TKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            T+++    RH R+++K+ GT ERPRL VFRS++H+Y Q+IDDT+  TLA++ST++  + +  + SS  T   S  VG++IAK  LEKGIT+V FDRGG  YHGR++ LA+AARE GLQ
Sbjct:    4 TRKQATQRRHRRVRRKVFGTSERPRLAVFRSHQHIYAQIIDDTQHRTLAASSTLEPSVKNS-ELSSTSTCAASAIVGQLIAKKALEKGITQVVFDRGGKIYHGRVRTLAEAAREAGLQ 120          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_MICAN (50S ribosomal protein L18 OS=Microcystis aeruginosa (strain NIES-843) GN=rplR PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.963e-29
Identity = 62/117 (52.99%), Postives = 85/117 (72.65%), Query Frame = 1
Query:  178 TKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528
            +++E    RH R+++KI+GT ERPRL VFRSN H+Y Q+IDD   HTLA+AST++  +  EL+  S  T E S  VG+++A+  L+KGI +V FDRGG  YHGR++ALA+AAR  GL
Sbjct:    4 SRKESVRRRHQRVRRKINGTAERPRLSVFRSNNHIYAQIIDDVAQHTLAAASTLEATLRGELE--STATQEASAAVGKLVAQRALDKGIEQVVFDRGGNLYHGRVKALAEAARSAGL 118          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_HELMI (50S ribosomal protein L18 OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=rplR PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.175e-29
Identity = 66/113 (58.41%), Postives = 80/113 (70.80%), Query Frame = 1
Query:  193 RTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            R  +H RI+K++ GT ERPRLCVFRS  H+Y QV++D    TL +AS++      +    SG  IE +KKVGE+IAK  LEKGI KV FDRGGY YHGRI ALA+AARE GLQ
Sbjct:   11 RQKKHMRIRKRVKGTEERPRLCVFRSLNHIYAQVVNDVTGRTLVAASSLDGEF--KAANVSGGNIEGAKKVGELIAKKALEKGIDKVVFDRGGYIYHGRIAALAEAAREAGLQ 121          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_THELT (50S ribosomal protein L18 OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=rplR PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.759e-29
Identity = 65/121 (53.72%), Postives = 86/121 (71.07%), Query Frame = 1
Query:  181 KREDRT----ARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+EDR      RH RI+KK+ GT ERPRL VFRS KH+Y Q+IDDTK HTL SAST+   +   +  +     E +K+VG+++A+  L KGI++V FDRGG+ +HGRI+ LADAARE GL+
Sbjct:    3 KKEDRKFKRIKRHLRIRKKVFGTSERPRLSVFRSEKHIYAQIIDDTKGHTLVSASTLDPDLRARIAKTYNK--EAAKEVGKLVAQKALSKGISQVVFDRGGFKFHGRIRELADAAREAGLK 121          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_CLOBB (50S ribosomal protein L18 OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=rplR PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.759e-29
Identity = 62/117 (52.99%), Postives = 83/117 (70.94%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  RT RH R++KK+ GTP+RPRL VFRS K++YVQ+IDD    T+ +AS++ K    E   ++G   E +K VG  +AK  +EKGIT+V FDRGGY YHGR+Q LA+ ARE GL+
Sbjct:    7 KKASRTKRHLRVRKKVFGTPDRPRLSVFRSEKNIYVQIIDDVNAVTIVAASSLDK----EFSTNNGGNKEGAKLVGAAVAKKAIEKGITEVVFDRGGYVYHGRVQELAEGAREAGLK 119          
The following BLAST results are available for this feature:
BLAST of CX288736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL18_BACC33.034e-2955.5650S ribosomal protein L18 OS=Bacillus cereus (stra... [more]
RL18_BACC13.034e-2955.5650S ribosomal protein L18 OS=Bacillus cereus (stra... [more]
RL18_BACAN3.034e-2955.5650S ribosomal protein L18 OS=Bacillus anthracis GN... [more]
RL18_BACAC3.034e-2955.5650S ribosomal protein L18 OS=Bacillus anthracis (s... [more]
RL18_BACAA3.034e-2955.5650S ribosomal protein L18 OS=Bacillus anthracis (s... [more]
RK18_CYAPA3.034e-2952.5450S ribosomal protein L18, cyanelle OS=Cyanophora ... [more]
RL18_MICAN3.963e-2952.9950S ribosomal protein L18 OS=Microcystis aeruginos... [more]
RL18_HELMI5.175e-2958.4150S ribosomal protein L18 OS=Heliobacterium modest... [more]
RL18_THELT6.759e-2953.7250S ribosomal protein L18 OS=Thermotoga lettingae ... [more]
RL18_CLOBB6.759e-2952.9950S ribosomal protein L18 OS=Clostridium botulinum... [more]

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Properties
Property NameValue
Genbank descriptionC02003G12SK IF1 Citrus clementina cDNA clone C02003G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288736 ID=CX288736; Name=CX288736; organism=Citrus clementina; type=EST; length=532bp
GAAAGTGTAAGGAGGAAGGGAATGGCAGCCGGTGCGAGCTCAGTTTGGAT
GCTTAATCAGAGTTCATTTCTAGGATCATGTCAGCAACTTTCGAGTGTTT
CAAAATTAGTGGCAAGCAGAAGGCCAAGGCCAGCACCGCCATCTCTTTTC
ATCGTCGAAGCCTCGACCAGACCAAGAACCAAAAGAGAGGACCGCACTGC
CCGCCATTCTCGCATCAAAAAGAAGATTGATGGGACTCCTGAGAGGCCGA
GGCTGTGTGTTTTCCGCTCCAACAAGCATCTCTATGTCCAGGTGATTGAT
GATACTAAGATGCACACACTTGCTTCAGCTTCGACGATGCAAAAGCCCAT
CTCTGACGAGCTTGACTATAGTTCTGGTCCGACGATTGAAGTTTCAAAGA
AGGTGGGTGAAATGATTGCAAAGTCATGTTTGGAGAAAGGGATCACAAAA
GTAGCCTTTGATCGAGGTGGGTACCCATACCATGGACGGATACAAGCCCT
AGCCGATGCAGCTCGGGAATATGGTCTTCAAT
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