CX288736
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_THEAB (50S ribosomal protein L18 OS=Thermosipho africanus (strain TCF52B) GN=rplR PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 1.967e-28 Identity = 60/113 (53.10%), Postives = 80/113 (70.80%), Query Frame = 1 Query: 193 RTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 R RH I+KKI GT +RPRLCV++S KH+Y Q+IDD K HTL +AST+ K + + L + E +++VG++I K +EKGI KV FDRGGY YHGR+ LA+ ARE GL+ Sbjct: 11 RKKRHLSIRKKIHGTADRPRLCVYKSEKHIYAQIIDDDKGHTLVAASTLDKELRETLKKTWNK--EAAREVGKLIGKRAIEKGIKKVVFDRGGYRYHGRVAELAEGAREAGLE 121
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SYNJA (50S ribosomal protein L18 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplR PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 1.967e-28 Identity = 61/118 (51.69%), Postives = 80/118 (67.80%), Query Frame = 1 Query: 178 TKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 T++ RH RI++K+ GTPERPRL VFRS++H+Y QVIDD HTL SAST+ + + + T E + VG +A+ L+ GI +V FDRGG YHGR+QALA+AARE GLQ Sbjct: 4 TRKAATQRRHRRIRRKVFGTPERPRLAVFRSHRHIYAQVIDDVAQHTLVSASTLDRELREAFKDIGTATREAAAVVGRSVAQRALQAGICQVVFDRGGKLYHGRVQALAEAAREAGLQ 121
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_STAHJ (50S ribosomal protein L18 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rplR PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 1.967e-28 Identity = 61/117 (52.14%), Postives = 83/117 (70.94%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K + R RH+R++ K+ GT E+PRL V+RSNKH+Y Q+IDD K TL AS+ K I+ + S +++S KVGE IAK +KGI ++ FDRGGY YHGR++ALA+AARE GL+ Sbjct: 7 KNKVRLKRHARVRTKLSGTAEKPRLNVYRSNKHIYAQIIDDVKGETLVQASSKDKDIASD----STSKVDLSTKVGEAIAKKASDKGIKEIVFDRGGYLYHGRVKALAEAARESGLE 119
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_PETMO (50S ribosomal protein L18 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rplR PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 1.967e-28 Identity = 61/117 (52.14%), Postives = 86/117 (73.50%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K+ R RH R++K + GT E+PRL VF+S KH+Y Q+IDDTK TLASAST QK + ++L+ + +K+VG++IA+ EKGIT++ FDR GY YHG+++ALA+AARE GL+ Sbjct: 7 KKALRQKRHLRVRKNVRGTSEKPRLTVFKSQKHIYAQIIDDTKGVTLASASTTQKQLKEKLEKTWDE--NAAKEVGKLIAEKAKEKGITEIVFDRSGYKYHGKVKALAEAARETGLK 121
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_LISIN (50S ribosomal protein L18 OS=Listeria innocua GN=rplR PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 1.967e-28 Identity = 64/117 (54.70%), Postives = 81/117 (69.23%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K + R RH+R++ KI GT RPRL VFRSNK++Y QVIDD TLASAS + K S+ ++ + KVGE++AK EKGIT V FDRGGY YHGR++ALA+AARE GL+ Sbjct: 7 KNKVRKKRHARVRSKISGTESRPRLNVFRSNKNIYAQVIDDVNGVTLASASNLDKDFG-----SAESKVDAASKVGELVAKRASEKGITSVTFDRGGYLYHGRVKALAEAARENGLE 118
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_LISW6 (50S ribosomal protein L18 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=rplR PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 2.568e-28 Identity = 63/117 (53.85%), Postives = 81/117 (69.23%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K + R RH+R++ KI GT RPRL VFRSNK++Y Q+IDD TLASAS + K S+ ++ + KVGE++AK EKGIT V FDRGGY YHGR++ALA+AARE GL+ Sbjct: 7 KNKVRKKRHARVRSKISGTESRPRLNVFRSNKNIYAQIIDDVNGVTLASASNLDKDFG-----SAESKVDAASKVGELVAKRASEKGITSVTFDRGGYLYHGRVKALAEAARENGLE 118
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_LISMO (50S ribosomal protein L18 OS=Listeria monocytogenes GN=rplR PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 2.568e-28 Identity = 63/117 (53.85%), Postives = 81/117 (69.23%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K + R RH+R++ KI GT RPRL VFRSNK++Y Q+IDD TLASAS + K S+ ++ + KVGE++AK EKGIT V FDRGGY YHGR++ALA+AARE GL+ Sbjct: 7 KNKVRKKRHARVRSKISGTESRPRLNVFRSNKNIYAQIIDDVNGVTLASASNLDKDFG-----SAESKVDAASKVGELVAKRASEKGITSVTFDRGGYLYHGRVKALAEAARENGLE 118
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_LISMH (50S ribosomal protein L18 OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=rplR PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 2.568e-28 Identity = 63/117 (53.85%), Postives = 81/117 (69.23%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K + R RH+R++ KI GT RPRL VFRSNK++Y Q+IDD TLASAS + K S+ ++ + KVGE++AK EKGIT V FDRGGY YHGR++ALA+AARE GL+ Sbjct: 7 KNKVRKKRHARVRSKISGTESRPRLNVFRSNKNIYAQIIDDVNGVTLASASNLDKDFG-----SAESKVDAASKVGELVAKRASEKGITSVTFDRGGYLYHGRVKALAEAARENGLE 118
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_LISMF (50S ribosomal protein L18 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rplR PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 2.568e-28 Identity = 63/117 (53.85%), Postives = 81/117 (69.23%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K + R RH+R++ KI GT RPRL VFRSNK++Y Q+IDD TLASAS + K S+ ++ + KVGE++AK EKGIT V FDRGGY YHGR++ALA+AARE GL+ Sbjct: 7 KNKVRKKRHARVRSKISGTESRPRLNVFRSNKNIYAQIIDDVNGVTLASASNLDKDFG-----SAESKVDAASKVGELVAKRASEKGITSVTFDRGGYLYHGRVKALAEAARENGLE 118
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_LISMC (50S ribosomal protein L18 OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rplR PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 2.568e-28 Identity = 63/117 (53.85%), Postives = 81/117 (69.23%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K + R RH+R++ KI GT RPRL VFRSNK++Y Q+IDD TLASAS + K S+ ++ + KVGE++AK EKGIT V FDRGGY YHGR++ALA+AARE GL+ Sbjct: 7 KNKVRKKRHARVRSKISGTESRPRLNVFRSNKNIYAQIIDDVNGVTLASASNLDKDFG-----SAESKVDAASKVGELVAKRASEKGITSVTFDRGGYLYHGRVKALAEAARENGLE 118 The following BLAST results are available for this feature:
BLAST of CX288736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288736 ID=CX288736; Name=CX288736; organism=Citrus clementina; type=EST; length=532bpback to top |