CX288736

Overview
NameCX288736
Unique NameCX288736
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_THEAB (50S ribosomal protein L18 OS=Thermosipho africanus (strain TCF52B) GN=rplR PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.967e-28
Identity = 60/113 (53.10%), Postives = 80/113 (70.80%), Query Frame = 1
Query:  193 RTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            R  RH  I+KKI GT +RPRLCV++S KH+Y Q+IDD K HTL +AST+ K + + L  +     E +++VG++I K  +EKGI KV FDRGGY YHGR+  LA+ ARE GL+
Sbjct:   11 RKKRHLSIRKKIHGTADRPRLCVYKSEKHIYAQIIDDDKGHTLVAASTLDKELRETLKKTWNK--EAAREVGKLIGKRAIEKGIKKVVFDRGGYRYHGRVAELAEGAREAGLE 121          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SYNJA (50S ribosomal protein L18 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplR PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.967e-28
Identity = 61/118 (51.69%), Postives = 80/118 (67.80%), Query Frame = 1
Query:  178 TKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            T++     RH RI++K+ GTPERPRL VFRS++H+Y QVIDD   HTL SAST+ + + +        T E +  VG  +A+  L+ GI +V FDRGG  YHGR+QALA+AARE GLQ
Sbjct:    4 TRKAATQRRHRRIRRKVFGTPERPRLAVFRSHRHIYAQVIDDVAQHTLVSASTLDRELREAFKDIGTATREAAAVVGRSVAQRALQAGICQVVFDRGGKLYHGRVQALAEAAREAGLQ 121          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_STAHJ (50S ribosomal protein L18 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rplR PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.967e-28
Identity = 61/117 (52.14%), Postives = 83/117 (70.94%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K + R  RH+R++ K+ GT E+PRL V+RSNKH+Y Q+IDD K  TL  AS+  K I+ +    S   +++S KVGE IAK   +KGI ++ FDRGGY YHGR++ALA+AARE GL+
Sbjct:    7 KNKVRLKRHARVRTKLSGTAEKPRLNVYRSNKHIYAQIIDDVKGETLVQASSKDKDIASD----STSKVDLSTKVGEAIAKKASDKGIKEIVFDRGGYLYHGRVKALAEAARESGLE 119          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_PETMO (50S ribosomal protein L18 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rplR PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.967e-28
Identity = 61/117 (52.14%), Postives = 86/117 (73.50%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  R  RH R++K + GT E+PRL VF+S KH+Y Q+IDDTK  TLASAST QK + ++L+ +       +K+VG++IA+   EKGIT++ FDR GY YHG+++ALA+AARE GL+
Sbjct:    7 KKALRQKRHLRVRKNVRGTSEKPRLTVFKSQKHIYAQIIDDTKGVTLASASTTQKQLKEKLEKTWDE--NAAKEVGKLIAEKAKEKGITEIVFDRSGYKYHGKVKALAEAARETGLK 121          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_LISIN (50S ribosomal protein L18 OS=Listeria innocua GN=rplR PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.967e-28
Identity = 64/117 (54.70%), Postives = 81/117 (69.23%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K + R  RH+R++ KI GT  RPRL VFRSNK++Y QVIDD    TLASAS + K        S+   ++ + KVGE++AK   EKGIT V FDRGGY YHGR++ALA+AARE GL+
Sbjct:    7 KNKVRKKRHARVRSKISGTESRPRLNVFRSNKNIYAQVIDDVNGVTLASASNLDKDFG-----SAESKVDAASKVGELVAKRASEKGITSVTFDRGGYLYHGRVKALAEAARENGLE 118          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_LISW6 (50S ribosomal protein L18 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=rplR PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.568e-28
Identity = 63/117 (53.85%), Postives = 81/117 (69.23%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K + R  RH+R++ KI GT  RPRL VFRSNK++Y Q+IDD    TLASAS + K        S+   ++ + KVGE++AK   EKGIT V FDRGGY YHGR++ALA+AARE GL+
Sbjct:    7 KNKVRKKRHARVRSKISGTESRPRLNVFRSNKNIYAQIIDDVNGVTLASASNLDKDFG-----SAESKVDAASKVGELVAKRASEKGITSVTFDRGGYLYHGRVKALAEAARENGLE 118          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_LISMO (50S ribosomal protein L18 OS=Listeria monocytogenes GN=rplR PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.568e-28
Identity = 63/117 (53.85%), Postives = 81/117 (69.23%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K + R  RH+R++ KI GT  RPRL VFRSNK++Y Q+IDD    TLASAS + K        S+   ++ + KVGE++AK   EKGIT V FDRGGY YHGR++ALA+AARE GL+
Sbjct:    7 KNKVRKKRHARVRSKISGTESRPRLNVFRSNKNIYAQIIDDVNGVTLASASNLDKDFG-----SAESKVDAASKVGELVAKRASEKGITSVTFDRGGYLYHGRVKALAEAARENGLE 118          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_LISMH (50S ribosomal protein L18 OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=rplR PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.568e-28
Identity = 63/117 (53.85%), Postives = 81/117 (69.23%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K + R  RH+R++ KI GT  RPRL VFRSNK++Y Q+IDD    TLASAS + K        S+   ++ + KVGE++AK   EKGIT V FDRGGY YHGR++ALA+AARE GL+
Sbjct:    7 KNKVRKKRHARVRSKISGTESRPRLNVFRSNKNIYAQIIDDVNGVTLASASNLDKDFG-----SAESKVDAASKVGELVAKRASEKGITSVTFDRGGYLYHGRVKALAEAARENGLE 118          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_LISMF (50S ribosomal protein L18 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rplR PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.568e-28
Identity = 63/117 (53.85%), Postives = 81/117 (69.23%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K + R  RH+R++ KI GT  RPRL VFRSNK++Y Q+IDD    TLASAS + K        S+   ++ + KVGE++AK   EKGIT V FDRGGY YHGR++ALA+AARE GL+
Sbjct:    7 KNKVRKKRHARVRSKISGTESRPRLNVFRSNKNIYAQIIDDVNGVTLASASNLDKDFG-----SAESKVDAASKVGELVAKRASEKGITSVTFDRGGYLYHGRVKALAEAARENGLE 118          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_LISMC (50S ribosomal protein L18 OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rplR PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.568e-28
Identity = 63/117 (53.85%), Postives = 81/117 (69.23%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K + R  RH+R++ KI GT  RPRL VFRSNK++Y Q+IDD    TLASAS + K        S+   ++ + KVGE++AK   EKGIT V FDRGGY YHGR++ALA+AARE GL+
Sbjct:    7 KNKVRKKRHARVRSKISGTESRPRLNVFRSNKNIYAQIIDDVNGVTLASASNLDKDFG-----SAESKVDAASKVGELVAKRASEKGITSVTFDRGGYLYHGRVKALAEAARENGLE 118          
The following BLAST results are available for this feature:
BLAST of CX288736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL18_THEAB1.967e-2853.1050S ribosomal protein L18 OS=Thermosipho africanus... [more]
RL18_SYNJA1.967e-2851.6950S ribosomal protein L18 OS=Synechococcus sp. (st... [more]
RL18_STAHJ1.967e-2852.1450S ribosomal protein L18 OS=Staphylococcus haemol... [more]
RL18_PETMO1.967e-2852.1450S ribosomal protein L18 OS=Petrotoga mobilis (st... [more]
RL18_LISIN1.967e-2854.7050S ribosomal protein L18 OS=Listeria innocua GN=r... [more]
RL18_LISW62.568e-2853.8550S ribosomal protein L18 OS=Listeria welshimeri s... [more]
RL18_LISMO2.568e-2853.8550S ribosomal protein L18 OS=Listeria monocytogene... [more]
RL18_LISMH2.568e-2853.8550S ribosomal protein L18 OS=Listeria monocytogene... [more]
RL18_LISMF2.568e-2853.8550S ribosomal protein L18 OS=Listeria monocytogene... [more]
RL18_LISMC2.568e-2853.8550S ribosomal protein L18 OS=Listeria monocytogene... [more]

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Properties
Property NameValue
Genbank descriptionC02003G12SK IF1 Citrus clementina cDNA clone C02003G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288736 ID=CX288736; Name=CX288736; organism=Citrus clementina; type=EST; length=532bp
GAAAGTGTAAGGAGGAAGGGAATGGCAGCCGGTGCGAGCTCAGTTTGGAT
GCTTAATCAGAGTTCATTTCTAGGATCATGTCAGCAACTTTCGAGTGTTT
CAAAATTAGTGGCAAGCAGAAGGCCAAGGCCAGCACCGCCATCTCTTTTC
ATCGTCGAAGCCTCGACCAGACCAAGAACCAAAAGAGAGGACCGCACTGC
CCGCCATTCTCGCATCAAAAAGAAGATTGATGGGACTCCTGAGAGGCCGA
GGCTGTGTGTTTTCCGCTCCAACAAGCATCTCTATGTCCAGGTGATTGAT
GATACTAAGATGCACACACTTGCTTCAGCTTCGACGATGCAAAAGCCCAT
CTCTGACGAGCTTGACTATAGTTCTGGTCCGACGATTGAAGTTTCAAAGA
AGGTGGGTGAAATGATTGCAAAGTCATGTTTGGAGAAAGGGATCACAAAA
GTAGCCTTTGATCGAGGTGGGTACCCATACCATGGACGGATACAAGCCCT
AGCCGATGCAGCTCGGGAATATGGTCTTCAAT
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