CX288736

Overview
NameCX288736
Unique NameCX288736
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_ENTFA (50S ribosomal protein L18 OS=Enterococcus faecalis GN=rplR PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 9.760e-28
Identity = 66/122 (54.10%), Postives = 82/122 (67.21%), Query Frame = 1
Query:  166 TRPRTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            T+P  K + R  RH R++ KI GT E PRL +FRSNK++Y QVIDD    TLASAS + K IS       G   E +  VG+++A+   EKGI KV FDRGGY YHGR+QALA+AARE GL+
Sbjct:    3 TKP-DKNKTRQKRHRRVRNKISGTAECPRLNIFRSNKNIYAQVIDDVAGVTLASASALDKEIS------GGTKTETAAAVGKLVAERAAEKGIKKVVFDRGGYLYHGRVQALAEAARENGLE 117          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_CYAP4 (50S ribosomal protein L18 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplR PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 9.760e-28
Identity = 58/115 (50.43%), Postives = 82/115 (71.30%), Query Frame = 1
Query:  187 EDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            E   +RH R+++K+ GT +RPRL VFRS++H+Y QVIDD + HTL +AS+++     +  Y  G T   S ++G++IA+  L KGI KV FDRGG  YHGR++ALA+AARE GL+
Sbjct:    7 ESTRSRHRRVRRKVGGTGDRPRLAVFRSHQHIYAQVIDDQQQHTLVAASSLEPEFKTQ--YGEGDTCAASTQIGKLIAERSLAKGIQKVVFDRGGKLYHGRVKALAEAAREAGLE 119          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_CLONN (50S ribosomal protein L18 OS=Clostridium novyi (strain NT) GN=rplR PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 9.760e-28
Identity = 61/117 (52.14%), Postives = 81/117 (69.23%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            +++ R  RH R++ KI GT  RPRL V+RS K++Y Q+IDD    TL SAST+ K  ++++    G   E +K VG M+AK  LEKGI +V FDRGGY YHGR++ LADAARE GL+
Sbjct:    7 RQKARVKRHLRVRNKISGTAARPRLAVYRSEKNIYAQIIDDVARITLVSASTLDKEFAEKV----GSNKEAAKAVGTMVAKRALEKGIEEVVFDRGGYVYHGRVKELADAAREAGLK 119          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_BREBN (50S ribosomal protein L18 OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=rplR PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 9.760e-28
Identity = 65/117 (55.56%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K + R  RH RI+K++ GT  RPRL VFRS+KH+Y Q+IDD    TL SAS++ K    EL  ++G  +E +  VG +IAK   EKG T+V FDRGGY YHGRI+ALA+AARE GLQ
Sbjct:    7 KNKARKKRHLRIRKRVIGTTIRPRLNVFRSSKHIYAQLIDDATGVTLVSASSLDK----ELGLNNGANVEAATAVGTLIAKRAQEKGATEVIFDRGGYIYHGRIKALAEAAREAGLQ 119          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SYNSC (50S ribosomal protein L18 OS=Synechococcus sp. (strain CC9605) GN=rplR PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.275e-27
Identity = 62/118 (52.54%), Postives = 81/118 (68.64%), Query Frame = 1
Query:  178 TKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            ++++    RH R+++ I GT +RPRL VFRSN H+Y QVIDD    TL SAST+ K +   L   +G + + S  VGE++AK  + KGI +V FDRGG  YHGRI+ALADAARE GLQ
Sbjct:    5 SRKQQTQKRHRRLRRHITGTSDRPRLAVFRSNNHIYAQVIDDAAQSTLCSASTVDKELRTGLKAPAG-SCDASVAVGELVAKRAMAKGIQQVVFDRGGNLYHGRIKALADAAREAGLQ 121          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SYNPX (50S ribosomal protein L18 OS=Synechococcus sp. (strain WH8102) GN=rplR PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.275e-27
Identity = 61/118 (51.69%), Postives = 82/118 (69.49%), Query Frame = 1
Query:  178 TKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            ++++    RH R+++ + GT +RPRL VFRSN H+Y QVIDD    TL SAST+ K +   L+ ++G + + S  VGE++AK  + KGI  V FDRGG  YHGRI+ALADAARE GLQ
Sbjct:    5 SRKQQTQKRHRRLRRHLTGTSDRPRLAVFRSNNHIYAQVIDDDAQSTLCSASTVDKELRAGLE-ANGGSCDASVAVGELVAKRAIAKGIQSVVFDRGGNLYHGRIKALADAAREAGLQ 121          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_PROM3 (50S ribosomal protein L18 OS=Prochlorococcus marinus (strain MIT 9303) GN=rplR PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.275e-27
Identity = 58/118 (49.15%), Postives = 83/118 (70.34%), Query Frame = 1
Query:  178 TKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            ++++    RH R+++ ++GT +RPRL VFRSN H+Y QVIDD   +TL +AST+ K +   L  + G + + S  VG+++AK  L KGI +V FDRGG  YHGR+++LADAARE GLQ
Sbjct:    5 SRKQQTQKRHRRLRRHLNGTAQRPRLAVFRSNNHIYAQVIDDEAQNTLCAASTLDKDLRTSLK-ADGSSCDASNAVGDLVAKRALAKGIQQVVFDRGGNLYHGRVKSLADAAREAGLQ 121          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_GEOSM (50S ribosomal protein L18 OS=Geobacter sp. (strain M21) GN=rplR PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.275e-27
Identity = 65/116 (56.03%), Postives = 82/116 (70.69%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528
            K+  R  R +R++KKI G+P RPRL VF+S +H+Y Q+IDDT   TLASAST+   +++ L Y+    IE + KVG  IAK  LEK IT V FDR G+ YHGRI+ALADAARE GL
Sbjct:    7 KQVARLKRQTRVRKKITGSPARPRLNVFKSARHIYAQLIDDTTGATLASASTLLGDVAEGLSYTG--NIEAATKVGAAIAKKALEKEITAVVFDRNGFLYHGRIKALADAARENGL 120          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_LACBA (50S ribosomal protein L18 OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=rplR PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.665e-27
Identity = 66/122 (54.10%), Postives = 83/122 (68.03%), Query Frame = 1
Query:  166 TRPRTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            T+P  K + R  RH R++ KI GT ERPRL VFRSNK++Y QVIDD    TL SAST+   ++ +         + +K VGE+IAK  +EK IT V FDRGGY YHGR+QALA+AARE GL+
Sbjct:    3 TKP-DKNKTRQKRHIRVRNKISGTAERPRLNVFRSNKNIYAQVIDDVAGVTLVSASTLDSEVAGD------NKTDQAKGVGELIAKRAIEKKITNVVFDRGGYLYHGRVQALAEAAREAGLK 117          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_GEOSL (50S ribosomal protein L18 OS=Geobacter sulfurreducens GN=rplR PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.665e-27
Identity = 63/116 (54.31%), Postives = 82/116 (70.69%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528
            K+     R +R++KKI GT ERPRL VF+S +H+Y Q+IDDT   TL SAST+QK  S+ L++     +E +K+VG +IAK  LEK I  V FDR G+ YHGRI+ALAD+ARE GL
Sbjct:    7 KKVAHLKRKTRVRKKIRGTTERPRLNVFKSAQHIYAQIIDDTTGTTLVSASTVQKEASESLNHCG--NVEAAKRVGALIAKRALEKNIATVVFDRNGFLYHGRIKALADSARENGL 120          
The following BLAST results are available for this feature:
BLAST of CX288736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL18_ENTFA9.760e-2854.1050S ribosomal protein L18 OS=Enterococcus faecalis... [more]
RL18_CYAP49.760e-2850.4350S ribosomal protein L18 OS=Cyanothece sp. (strai... [more]
RL18_CLONN9.760e-2852.1450S ribosomal protein L18 OS=Clostridium novyi (st... [more]
RL18_BREBN9.760e-2855.5650S ribosomal protein L18 OS=Brevibacillus brevis ... [more]
RL18_SYNSC1.275e-2752.5450S ribosomal protein L18 OS=Synechococcus sp. (st... [more]
RL18_SYNPX1.275e-2751.6950S ribosomal protein L18 OS=Synechococcus sp. (st... [more]
RL18_PROM31.275e-2749.1550S ribosomal protein L18 OS=Prochlorococcus marin... [more]
RL18_GEOSM1.275e-2756.0350S ribosomal protein L18 OS=Geobacter sp. (strain... [more]
RL18_LACBA1.665e-2754.1050S ribosomal protein L18 OS=Lactobacillus brevis ... [more]
RL18_GEOSL1.665e-2754.3150S ribosomal protein L18 OS=Geobacter sulfurreduc... [more]

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Properties
Property NameValue
Genbank descriptionC02003G12SK IF1 Citrus clementina cDNA clone C02003G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288736 ID=CX288736; Name=CX288736; organism=Citrus clementina; type=EST; length=532bp
GAAAGTGTAAGGAGGAAGGGAATGGCAGCCGGTGCGAGCTCAGTTTGGAT
GCTTAATCAGAGTTCATTTCTAGGATCATGTCAGCAACTTTCGAGTGTTT
CAAAATTAGTGGCAAGCAGAAGGCCAAGGCCAGCACCGCCATCTCTTTTC
ATCGTCGAAGCCTCGACCAGACCAAGAACCAAAAGAGAGGACCGCACTGC
CCGCCATTCTCGCATCAAAAAGAAGATTGATGGGACTCCTGAGAGGCCGA
GGCTGTGTGTTTTCCGCTCCAACAAGCATCTCTATGTCCAGGTGATTGAT
GATACTAAGATGCACACACTTGCTTCAGCTTCGACGATGCAAAAGCCCAT
CTCTGACGAGCTTGACTATAGTTCTGGTCCGACGATTGAAGTTTCAAAGA
AGGTGGGTGAAATGATTGCAAAGTCATGTTTGGAGAAAGGGATCACAAAA
GTAGCCTTTGATCGAGGTGGGTACCCATACCATGGACGGATACAAGCCCT
AGCCGATGCAGCTCGGGAATATGGTCTTCAAT
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