CX288736
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_ENTFA (50S ribosomal protein L18 OS=Enterococcus faecalis GN=rplR PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 9.760e-28 Identity = 66/122 (54.10%), Postives = 82/122 (67.21%), Query Frame = 1 Query: 166 TRPRTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 T+P K + R RH R++ KI GT E PRL +FRSNK++Y QVIDD TLASAS + K IS G E + VG+++A+ EKGI KV FDRGGY YHGR+QALA+AARE GL+ Sbjct: 3 TKP-DKNKTRQKRHRRVRNKISGTAECPRLNIFRSNKNIYAQVIDDVAGVTLASASALDKEIS------GGTKTETAAAVGKLVAERAAEKGIKKVVFDRGGYLYHGRVQALAEAARENGLE 117
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_CYAP4 (50S ribosomal protein L18 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplR PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 9.760e-28 Identity = 58/115 (50.43%), Postives = 82/115 (71.30%), Query Frame = 1 Query: 187 EDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 E +RH R+++K+ GT +RPRL VFRS++H+Y QVIDD + HTL +AS+++ + Y G T S ++G++IA+ L KGI KV FDRGG YHGR++ALA+AARE GL+ Sbjct: 7 ESTRSRHRRVRRKVGGTGDRPRLAVFRSHQHIYAQVIDDQQQHTLVAASSLEPEFKTQ--YGEGDTCAASTQIGKLIAERSLAKGIQKVVFDRGGKLYHGRVKALAEAAREAGLE 119
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_CLONN (50S ribosomal protein L18 OS=Clostridium novyi (strain NT) GN=rplR PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 9.760e-28 Identity = 61/117 (52.14%), Postives = 81/117 (69.23%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 +++ R RH R++ KI GT RPRL V+RS K++Y Q+IDD TL SAST+ K ++++ G E +K VG M+AK LEKGI +V FDRGGY YHGR++ LADAARE GL+ Sbjct: 7 RQKARVKRHLRVRNKISGTAARPRLAVYRSEKNIYAQIIDDVARITLVSASTLDKEFAEKV----GSNKEAAKAVGTMVAKRALEKGIEEVVFDRGGYVYHGRVKELADAAREAGLK 119
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_BREBN (50S ribosomal protein L18 OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=rplR PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 9.760e-28 Identity = 65/117 (55.56%), Postives = 82/117 (70.09%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K + R RH RI+K++ GT RPRL VFRS+KH+Y Q+IDD TL SAS++ K EL ++G +E + VG +IAK EKG T+V FDRGGY YHGRI+ALA+AARE GLQ Sbjct: 7 KNKARKKRHLRIRKRVIGTTIRPRLNVFRSSKHIYAQLIDDATGVTLVSASSLDK----ELGLNNGANVEAATAVGTLIAKRAQEKGATEVIFDRGGYIYHGRIKALAEAAREAGLQ 119
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SYNSC (50S ribosomal protein L18 OS=Synechococcus sp. (strain CC9605) GN=rplR PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 1.275e-27 Identity = 62/118 (52.54%), Postives = 81/118 (68.64%), Query Frame = 1 Query: 178 TKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 ++++ RH R+++ I GT +RPRL VFRSN H+Y QVIDD TL SAST+ K + L +G + + S VGE++AK + KGI +V FDRGG YHGRI+ALADAARE GLQ Sbjct: 5 SRKQQTQKRHRRLRRHITGTSDRPRLAVFRSNNHIYAQVIDDAAQSTLCSASTVDKELRTGLKAPAG-SCDASVAVGELVAKRAMAKGIQQVVFDRGGNLYHGRIKALADAAREAGLQ 121
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SYNPX (50S ribosomal protein L18 OS=Synechococcus sp. (strain WH8102) GN=rplR PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 1.275e-27 Identity = 61/118 (51.69%), Postives = 82/118 (69.49%), Query Frame = 1 Query: 178 TKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 ++++ RH R+++ + GT +RPRL VFRSN H+Y QVIDD TL SAST+ K + L+ ++G + + S VGE++AK + KGI V FDRGG YHGRI+ALADAARE GLQ Sbjct: 5 SRKQQTQKRHRRLRRHLTGTSDRPRLAVFRSNNHIYAQVIDDDAQSTLCSASTVDKELRAGLE-ANGGSCDASVAVGELVAKRAIAKGIQSVVFDRGGNLYHGRIKALADAAREAGLQ 121
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_PROM3 (50S ribosomal protein L18 OS=Prochlorococcus marinus (strain MIT 9303) GN=rplR PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 1.275e-27 Identity = 58/118 (49.15%), Postives = 83/118 (70.34%), Query Frame = 1 Query: 178 TKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 ++++ RH R+++ ++GT +RPRL VFRSN H+Y QVIDD +TL +AST+ K + L + G + + S VG+++AK L KGI +V FDRGG YHGR+++LADAARE GLQ Sbjct: 5 SRKQQTQKRHRRLRRHLNGTAQRPRLAVFRSNNHIYAQVIDDEAQNTLCAASTLDKDLRTSLK-ADGSSCDASNAVGDLVAKRALAKGIQQVVFDRGGNLYHGRVKSLADAAREAGLQ 121
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_GEOSM (50S ribosomal protein L18 OS=Geobacter sp. (strain M21) GN=rplR PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 1.275e-27 Identity = 65/116 (56.03%), Postives = 82/116 (70.69%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528 K+ R R +R++KKI G+P RPRL VF+S +H+Y Q+IDDT TLASAST+ +++ L Y+ IE + KVG IAK LEK IT V FDR G+ YHGRI+ALADAARE GL Sbjct: 7 KQVARLKRQTRVRKKITGSPARPRLNVFKSARHIYAQLIDDTTGATLASASTLLGDVAEGLSYTG--NIEAATKVGAAIAKKALEKEITAVVFDRNGFLYHGRIKALADAARENGL 120
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_LACBA (50S ribosomal protein L18 OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=rplR PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 1.665e-27 Identity = 66/122 (54.10%), Postives = 83/122 (68.03%), Query Frame = 1 Query: 166 TRPRTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 T+P K + R RH R++ KI GT ERPRL VFRSNK++Y QVIDD TL SAST+ ++ + + +K VGE+IAK +EK IT V FDRGGY YHGR+QALA+AARE GL+ Sbjct: 3 TKP-DKNKTRQKRHIRVRNKISGTAERPRLNVFRSNKNIYAQVIDDVAGVTLVSASTLDSEVAGD------NKTDQAKGVGELIAKRAIEKKITNVVFDRGGYLYHGRVQALAEAAREAGLK 117
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_GEOSL (50S ribosomal protein L18 OS=Geobacter sulfurreducens GN=rplR PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 1.665e-27 Identity = 63/116 (54.31%), Postives = 82/116 (70.69%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528 K+ R +R++KKI GT ERPRL VF+S +H+Y Q+IDDT TL SAST+QK S+ L++ +E +K+VG +IAK LEK I V FDR G+ YHGRI+ALAD+ARE GL Sbjct: 7 KKVAHLKRKTRVRKKIRGTTERPRLNVFKSAQHIYAQIIDDTTGTTLVSASTVQKEASESLNHCG--NVEAAKRVGALIAKRALEKNIATVVFDRNGFLYHGRIKALADSARENGL 120 The following BLAST results are available for this feature:
BLAST of CX288736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288736 ID=CX288736; Name=CX288736; organism=Citrus clementina; type=EST; length=532bpback to top |