CX288742

Overview
NameCX288742
Unique NameCX288742
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length636
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288742 vs. ExPASy Swiss-Prot
Match: ASK15_ARATH (SKP1-like protein 15 OS=Arabidopsis thaliana GN=ASK15 PE=2 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 2.552e-37
Identity = 82/158 (51.90%), Postives = 103/158 (65.19%), Query Frame = 3
Query:   21 DGESFEVEEAVALESTTIKHMIEDDCADXGIPLPNVTGKILAKVVEYCKKHVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVK-VDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFT-PXXXXXXXXXNQWAFE 488
            DGESF+VEE VA +   +KH++EDDC    IPL NVTG IL+ V+EYCKKHV+     D                +++L +WD +F+K +D  T+F LILAANYLN++GLL LTCQTVAD IK KTPEE+R+ FNI+NDFT           N WAFE
Sbjct:   12 DGESFQVEEVVARKLQIVKHLLEDDCVINEIPLQNVTGNILSIVLEYCKKHVD--DVVDDDASEEPKKKKPDDEAKQNLDAWDAEFMKNIDMETIFKLILAANYLNVEGLLGLTCQTVADYIKDKTPEEVRELFNIENDFTHEEEEEAIRKENAWAFE 167          
BLAST of CX288742 vs. ExPASy Swiss-Prot
Match: SKP1B_DICDI (SCF ubiquitin ligase complex protein SKP1b OS=Dictyostelium discoideum GN=fpaB-1 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 9.696e-37
Identity = 82/160 (51.25%), Postives = 105/160 (65.62%), Query Frame = 3
Query:    3 IRHEGCDGESFEVEEAVALESTTIKHMIED-DCADXGIPLPNVTGKILAKVVEYCKKHVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQW 479
            ++ E  D + FE+E+ +A  S TIK+MIED   +D  IPLPNVT  IL KV++YC+ H + P+ Q                  +D+  +D DF KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MI+GKTPEEIRK FNIKNDFTP         N+W
Sbjct:    4 VKLESSDEKVFEIEKEIACMSVTIKNMIEDIGESDAPIPLPNVTSTILEKVLDYCRHHHQHPSPQGDDKKDEKRL--------DDIPPYDRDFCKVDQPTLFELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENEW 155          
BLAST of CX288742 vs. ExPASy Swiss-Prot
Match: SKP1A_DICDI (SCF ubiquitin ligase complex protein SKP1a OS=Dictyostelium discoideum GN=fpaA PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 9.696e-37
Identity = 82/160 (51.25%), Postives = 105/160 (65.62%), Query Frame = 3
Query:    3 IRHEGCDGESFEVEEAVALESTTIKHMIED-DCADXGIPLPNVTGKILAKVVEYCKKHVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQW 479
            ++ E  D + FE+E+ +A  S TIK+MIED   +D  IPLPNVT  IL KV++YC+ H + P+ Q                  +D+  +D DF KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MI+GKTPEEIRK FNIKNDFTP         N+W
Sbjct:    4 VKLESSDEKVFEIEKEIACMSVTIKNMIEDIGESDSPIPLPNVTSTILEKVLDYCRHHHQHPSPQGDDKKDEKRL--------DDIPPYDRDFCKVDQPTLFELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENEW 155          
BLAST of CX288742 vs. ExPASy Swiss-Prot
Match: ASK19_ARATH (SKP1-like protein 19 OS=Arabidopsis thaliana GN=ASK19 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.685e-36
Identity = 84/179 (46.93%), Postives = 103/179 (57.54%), Query Frame = 3
Query:   21 DGESFEVEEAVALESTTIKHMIEDDCADXGIPLPNVTGKILAKVVEYCKKHVE-----VPTTQ-----------------DXXXXXXXXXXXXXXXXEEDLKSWDTDFVK-VDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 488
            DGESF+VEE VA +   + H+IEDDCA   IP+PNVTG+ILAKV+EYCKKHVE     V T +                 D                +E L  WD  F+K  D  T+FD+ILAANYLN++GL DL  +T+AD IK  TPEE+R+ FNI+NDFTP         N W FE
Sbjct:   12 DGESFKVEEVVARKLQIVGHIIEDDCATNKIPIPNVTGEILAKVIEYCKKHVEDDDDVVETHESSTKGDKTVEEAKKKPDDVAVPESTEGDDEAEDKKEKLNEWDAKFMKDFDIKTIFDIILAANYLNVQGLFDLCSKTIADYIKDMTPEEVRELFNIENDFTPEEEEAIRNENAWTFE 190          
BLAST of CX288742 vs. ExPASy Swiss-Prot
Match: ASK18_ARATH (SKP1-like protein 18 OS=Arabidopsis thaliana GN=ASK18 PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 8.209e-36
Identity = 78/156 (50.00%), Postives = 99/156 (63.46%), Query Frame = 3
Query:   21 DGESFEVEEAVALESTTIKHMIEDDCADXGIPLPNVTGKILAKVVEYCKKHVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFV-KVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAF 485
            DGESFE++EAVA +   I HM+ED+CA   IPL NVTG IL+K++EY K HV  P+ +D                +++L SWD  F+ K+D  T+F +ILAANYLN +GLL    QTVAD IK KTPEE+R+ FNI+NDFTP         N W F
Sbjct:   12 DGESFEIDEAVARKFLIIVHMMEDNCAGEAIPLENVTGDILSKIIEYAKMHVNEPSEEDEDEEA-----------KKNLDSWDAKFMEKLDLETIFKIILAANYLNFEGLLGFASQTVADYIKDKTPEEVREIFNIENDFTPEEEEEIRKENAWTF 156          
BLAST of CX288742 vs. ExPASy Swiss-Prot
Match: ASK5_ARATH (SKP1-like protein 5 OS=Arabidopsis thaliana GN=ASK5 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.388e-35
Identity = 80/162 (49.38%), Postives = 101/162 (62.35%), Query Frame = 3
Query:   21 DGESFEVEEAVALESTTIKHMIEDDCADXGIPLPNVTGKILAKVVEYCKKHVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQAT-LFDLILAANYLNIKGLLDLTCQTV-----ADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 488
            DG+SFE++E VA +S  I HM+ED CA   IPL NVT KIL  V++YC+KHV+                      EEDLK WD DF+K  + T LFD+++AANYLNI+ LLDLTC+TV     AD++ GKTP+EIR  FNI+ND T          NQWAF+
Sbjct:   11 DGKSFEIDEDVARKSIAINHMVEDGCATDVIPLRNVTSKILKIVIDYCEKHVK-------------------SKEEEDLKEWDADFMKTIETTILFDVMMAANYLNIQSLLDLTCKTVSDLLQADLLSGKTPDEIRAHFNIENDLTAEEVAKIREENQWAFQ 153          
BLAST of CX288742 vs. ExPASy Swiss-Prot
Match: ASK17_ARATH (SKP1-like protein 17 OS=Arabidopsis thaliana GN=ASK17 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.958e-29
Identity = 69/156 (44.23%), Postives = 91/156 (58.33%), Query Frame = 3
Query:   21 DGESFEVEEAVALESTTIKHMIEDDCADXGIPLPNVTGKILAKVVEYCKKHVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVK-VDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAF 485
            D E FE++EAVA +   + HMI+DDCAD  I L NVTGKILA ++EYCKKHV+                      + +  +WD +FVK +D  TLF L+ AA+YL + GL +L  Q +AD    KT  EIR+ FNI+ND+TP         N+WAF
Sbjct:   12 DDECFEIDEAVARKMQMVAHMIDDDCADKAIRLQNVTGKILAIIIEYCKKHVD------------------DVEAKNEFVTWDAEFVKNIDMDTLFKLLDAADYLIVIGLKNLIAQAIADYTADKTVNEIRELFNIENDYTPEEEEELRKKNEWAF 149          
BLAST of CX288742 vs. ExPASy Swiss-Prot
Match: SKP1_SCHPO (Suppressor of kinetochore protein 1 OS=Schizosaccharomyces pombe GN=skp1 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.698e-29
Identity = 67/155 (43.23%), Postives = 93/155 (60.00%), Query Frame = 3
Query:   21 DGESFEVEEAVALESTTIKHMIED-DCADXGIPLPNVTGKILAKVVEYCKKHVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWA 482
            D E F V++ +A  S  IK+M+ED    +  IPLPNV+  +L KV+E+C+ H      ++                  D+  WD  F+ VDQ  LF+++LA+NYL+IK LLD  C+TVA+MI+GK+PE+IRKTFNI NDFTP         N+WA
Sbjct:   10 DNEEFVVDQLIAERSMLIKNMLEDVGEINVPIPLPNVSSNVLRKVLEWCEHH------KNDLYSGTEEESDIRLKKSTDIDEWDRKFMAVDQEMLFEIVLASNYLDIKPLLDTGCKTVANMIRGKSPEDIRKTFNIPNDFTPEEEEQIRKENEWA 158          
BLAST of CX288742 vs. ExPASy Swiss-Prot
Match: ASK8_ARATH (SKP1-like protein 8 OS=Arabidopsis thaliana GN=ASK8 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.442e-29
Identity = 66/156 (42.31%), Postives = 92/156 (58.97%), Query Frame = 3
Query:   21 DGESFEVEEAVALESTTIKHMIEDDCADXGIPLPNVTGKILAKVVEYCKKHVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 488
            +G++FE+EE  A +  TI HMIE +C D  I +  +T +IL  V+EYC KH                        ++DL+ WD +F++ D++T+F L  AAN+LN K LL L  QTVADMIKG TP+++R+ FNI+ND TP         N+WAFE
Sbjct:   12 EGKTFEIEEETARQCQTIAHMIEAECTDNVILVLKMTSEILEMVIEYCNKH---------------HVDAANPCSDDDLEKWDKEFMEKDKSTIFALTNAANFLNNKSLLHLAGQTVADMIKGNTPKQMREFFNIENDLTPEEEAAIRRENKWAFE 152          
BLAST of CX288742 vs. ExPASy Swiss-Prot
Match: SKP1_YEAST (Suppressor of kinetochore protein 1 OS=Saccharomyces cerevisiae GN=SKP1 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 9.414e-24
Identity = 57/134 (42.54%), Postives = 80/134 (59.70%), Query Frame = 3
Query:   87 EDDCADXGIPLPNVTGKILAKVVEYCKKHVE--VPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWA 482
            ++D  +  +P+PNV   +L KV+E+ + H +   P   D                   + SWD +F+KVDQ  L+++ILAANYLNIK LLD  C+ VA+MI+G++PEEIR+TFNI NDFTP         N+WA
Sbjct:   69 DEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRK-----------SAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWA 191          
The following BLAST results are available for this feature:
BLAST of CX288742 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
ASK15_ARATH2.552e-3751.90SKP1-like protein 15 OS=Arabidopsis thaliana GN=AS... [more]
SKP1B_DICDI9.696e-3751.25SCF ubiquitin ligase complex protein SKP1b OS=Dict... [more]
SKP1A_DICDI9.696e-3751.25SCF ubiquitin ligase complex protein SKP1a OS=Dict... [more]
ASK19_ARATH3.685e-3646.93SKP1-like protein 19 OS=Arabidopsis thaliana GN=AS... [more]
ASK18_ARATH8.209e-3650.00SKP1-like protein 18 OS=Arabidopsis thaliana GN=AS... [more]
ASK5_ARATH2.388e-3549.38SKP1-like protein 5 OS=Arabidopsis thaliana GN=ASK... [more]
ASK17_ARATH1.958e-2944.23SKP1-like protein 17 OS=Arabidopsis thaliana GN=AS... [more]
SKP1_SCHPO5.698e-2943.23Suppressor of kinetochore protein 1 OS=Schizosacch... [more]
ASK8_ARATH7.442e-2942.31SKP1-like protein 8 OS=Arabidopsis thaliana GN=ASK... [more]
SKP1_YEAST9.414e-2442.54Suppressor of kinetochore protein 1 OS=Saccharomyc... [more]

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Properties
Property NameValue
Genbank descriptionC02003H06SK IF1 Citrus clementina cDNA clone C02003H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288742 ID=CX288742; Name=CX288742; organism=Citrus clementina; type=EST; length=636bp
GAATTCGGCACGAGGGCTGTGACGGCGAGTCTTTCGAGGTCGAGGAGGCT
GTCGCGCTTGAGTCGACGACCATCAAGCACATGATCGAGGACGACTGCGC
CGATNACGGCATCCCGTTACCGAACGTGACGGGCAAGATCCTGGCGAAGG
TGGTTGAGTATTGCAAGAAACACGTGGAGGTTCCTACGACCCAGGATAGC
AACACCAGCGGCGCCAACAGCAACGGTGCTGCCACTAACGGTGGTGAGGA
GGATCTCAAAAGCTGGGACACTGACTTCGTCAAAGTTGACCAGGCCACTC
TCTTCGATCTCATCCTGGCTGCAAACTACCTGAACATCAAGGGGCTGCTG
GACCTTACCTGCCAGACTGTTGCTGACATGATCAAGGGAAAGACTCCGGA
GGAGATTCGAAAGACCTTTAACATCAAGAATGACTTCACTCCAGAGGAGG
AAGAAGAGGTCCGTAGGGAGAACCAGTGGGCTTTTGAGTGAAAGTTGTTT
CAACAAAGACAATTTGTCATTATCATTGTCTTGCAATCTTGCTGTCTTTA
ACATGTAGATGTAGTTTTTTAGGGCTTATCTTTTCCTTTCTCATTGGACT
TTCGAACTTATTAGCTGTTTGAAATGTAAATAATAG
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