CX288744

Overview
NameCX288744
Unique NameCX288744
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length517
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10840 contig Ccv1_Contig10840:213..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: CCR4B_ARATH (Carbon catabolite repressor protein 4 homolog 2 OS=Arabidopsis thaliana GN=CCR4-2 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 3.688e-13
Identity = 48/148 (32.43%), Postives = 79/148 (53.38%), Query Frame = 1
Query:   88 NPLRRKPFDEPSPDVLRHWIDADPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRYFDIL-NVMEKAGYAGCYKRRTGD-------NVDGCAMFWKADKFRLLEQTSIEFKE 501
            +P  RK       D + H +D D   I S   F+V+SYNIL D +A    DLY       + W  R++ + +E++G   D++C+QEV  D + +I    ++K GY   YKR+T +        +DGCA F++ D+F  +++  +EF +
Sbjct:  221 SPSPRKLIPVNGADGMGH-LDQDAR-IQSAGSFTVLSYNILSDTSASS--DLYSYCPPWALSWPYRRQNLLREIVGYRADVVCLQEVQSDHFHEIFAPELDKHGYQALYKRKTNEVLSGSTSAIDGCATFFRRDRFSHVKKYDVEFNK 364          
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: CNOT6_RAT (CCR4-NOT transcription complex subunit 6 OS=Rattus norvegicus GN=Cnot6 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.817e-13
Identity = 49/151 (32.45%), Postives = 82/151 (54.30%), Query Frame = 1
Query:   97 RRKPFDEPSPDVLRHWIDA-DPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVD--RYFDILNV-MEKAGYAGCYKRRTG---------DNVDGCAMFWKADKFRLLEQTSIEFKEFGL 510
            +R   ++P P   R WI   +P+       FSV+ YN+L DK A   R LY       + W+ RK+ I QE++  N DII +QEV+  +Y+    V +++ GY G +  ++           +VDGCA+F+K +KF L+++ ++EF +  +
Sbjct:  162 KRISTEQPPP---RSWIMLQEPDRTRPTALFSVMCYNVLCDKYAT--RQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAM 307          
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: CNOT6_MOUSE (CCR4-NOT transcription complex subunit 6 OS=Mus musculus GN=Cnot6 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 4.817e-13
Identity = 49/151 (32.45%), Postives = 82/151 (54.30%), Query Frame = 1
Query:   97 RRKPFDEPSPDVLRHWIDA-DPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVD--RYFDILNV-MEKAGYAGCYKRRTG---------DNVDGCAMFWKADKFRLLEQTSIEFKEFGL 510
            +R   ++P P   R WI   +P+       FSV+ YN+L DK A   R LY       + W+ RK+ I QE++  N DII +QEV+  +Y+    V +++ GY G +  ++           +VDGCA+F+K +KF L+++ ++EF +  +
Sbjct:  162 KRISTEQPPP---RSWIMLQEPDRTRPTALFSVMCYNVLCDKYAT--RQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAM 307          
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: CCR4A_ARATH (Carbon catabolite repressor protein 4 homolog 1 OS=Arabidopsis thaliana GN=CCR4-1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.817e-13
Identity = 45/148 (30.41%), Postives = 80/148 (54.05%), Query Frame = 1
Query:   88 NPLRRKPFDEPSPDVLRHWIDADPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDR-YFD--ILNVMEKAGYAGCYKRRTGD-------NVDGCAMFWKADKFRLLEQTSIEFKE 501
            +P  R+       DV  H +D++  P+S    F+V+SYNIL D   +   D+Y       + W  R++ + +E++    DI+C+QEV   +F+   L  ++K GY G +KR+T +        +DGCA F++ D+F  +++  +EF +
Sbjct:  218 SPSPRRLISISGTDVTGH-LDSNGRPLS-MGTFTVLSYNILSD--TYASSDIYSYCPTWALAWTYRRQNLLREIVKYRADIVCLQEVQNDHFEEFFLPELDKHGYQGLFKRKTNEVFIGNTNTIDGCATFFRRDRFSHVKKYEVEFNK 361          
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: CNOT6_XENLA (CCR4-NOT transcription complex subunit 6 OS=Xenopus laevis GN=cnot6 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.291e-13
Identity = 48/146 (32.88%), Postives = 80/146 (54.79%), Query Frame = 1
Query:  112 DEPSPDVLRHWIDA-DPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVD--RYFDILNV-MEKAGYAGCYKRRTG---------DNVDGCAMFWKADKFRLLEQTSIEFKEFGL 510
            ++P P   R WI   +P+       FSV+ YN+L DK A   R LY       + W+ RK+ I QE++  N DII +QEV+  +Y+    V +++ GY G +  ++           +VDGCA+F+K +KF L+++ ++EF +  +
Sbjct:  162 EQPPP---RSWIMLQEPDRTRPTALFSVMCYNVLCDKYAT--RQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAM 302          
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: CNOT6_HUMAN (CCR4-NOT transcription complex subunit 6 OS=Homo sapiens GN=CNOT6 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 6.291e-13
Identity = 48/151 (31.79%), Postives = 82/151 (54.30%), Query Frame = 1
Query:   97 RRKPFDEPSPDVLRHWIDA-DPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVD--RYFDILNV-MEKAGYAGCYKRRTG---------DNVDGCAMFWKADKFRLLEQTSIEFKEFGL 510
            +R   ++P P   R WI   +P+       FSV+ YN+L DK A   R LY       + W+ RK+ I QE++  N DI+ +QEV+  +Y+    V +++ GY G +  ++           +VDGCA+F+K +KF L+++ ++EF +  +
Sbjct:  162 KRITTEQPPP---RSWIMLQEPDRTRPTALFSVMCYNVLCDKYAT--RQLYGYCPSWALNWDYRKKAIIQEILSCNADIVSLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAM 307          
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: CCR4_USTMA (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Ustilago maydis GN=CCR4 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.291e-13
Identity = 51/154 (33.12%), Postives = 82/154 (53.25%), Query Frame = 1
Query:  118 PSPDVLRHWIDADPN----------PISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRYFD-ILNVMEKAGYAGCY-----KRRTGDN----VDGCAMFWKADKFRLLEQTSIEFKEFGLR 513
            P P   R WI  DP+            ++QE F+V+SYNIL D+ A     +Y       + W+ RK  I QE++  + DI C+QEV  ++Y D  L+ + +  Y G +      R   D+    VDGCA+F+K++K++L+E+  +EF +  L+
Sbjct:  272 PLPPPEREWIMIDPDLPDLDADKHANDATQESFNVLSYNILFDRYATAQ--MYGYTPSWALAWDYRKEFILQEVMSYSADICCLQEVGVEQYEDYFLHHLSQQDYEGVFYPKSRARTMRDDERRRVDGCAIFYKSNKYQLIEKQLVEFNQIALQ 423          
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: CCR4_ASPCL (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Aspergillus clavatus GN=ccr4 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.073e-12
Identity = 49/148 (33.11%), Postives = 68/148 (45.95%), Query Frame = 1
Query:  106 PFDEPSPDVLRHWIDADPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDR------------YFDILNVMEKAGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLR 513
            P   P PD  R W+  D    +S E+ +V+SYN L D +A +    Y   R   + W  R+ LI  EL     DI+C+QE+D+            Y D   V    G A   +      VDGCA F+K  KF LL++  I F +  +R
Sbjct:  274 PVHLPPPD--RDWVVLDETASASTEKITVLSYNTLCDSSATQSHYGYAPARV--LSWEFRRELILSELRSHGSDIVCLQEIDQGSYNEYFREQLAYNDYKGVYWPRGRAMGMQEEDAKGVDGCATFFKGSKFILLDKQLINFGQTAVR 417          
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: CCR4_EMENI (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Emericella nidulans GN=ccr4 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.402e-12
Identity = 47/142 (33.10%), Postives = 66/142 (46.48%), Query Frame = 1
Query:  124 PDVLRHWIDADPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDR------------YFDILNVMEKAGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLR 513
            P   R W+  D    +S ++ SV+SYN L D +A +    Y   R   + W  R+  I  EL   +PDIIC+QE+D+            Y D   V    G A   +      VDGCA F+K  KF LL++  I F +  +R
Sbjct:  289 PPPARDWLVLDETAATSPDKVSVLSYNTLCDSSATQSHYGYAPSRV--LSWEFRRETILNELRAHDPDIICLQEIDQGSYNEFFREQLAYSDYKGVFWPRGRAMGMQEEDAKGVDGCATFFKGSKFILLDKQVINFGQTAVR 428          
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: NOCT_HUMAN (Nocturnin OS=Homo sapiens GN=CCRN4L PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 4.078e-12
Identity = 41/140 (29.29%), Postives = 68/140 (48.57%), Query Frame = 1
Query:  124 PDVLRHWIDADPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDRYFDILN-VMEKAGYAG---------CYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLR 513
            P   R ++D   +  S+     V+ +NIL      + +D +     E +KW  RK LI +E++   PDI+C+QEVD YFD    ++ + GY G         C      +  DGCA+F+  ++F+L+   +I      L+
Sbjct:  123 PRFQRDFVDLRTDCPSTHPPIRVMQWNILAQALG-EGKDNFVQCPVEALKWEERKCLILEEILAYQPDILCLQEVDHYFDTFQPLLSRLGYQGTFFPKPWSPCLDVEHNNGPDGCALFFLQNRFKLVNSANIRLTAMTLK 261          
The following BLAST results are available for this feature:
BLAST of CX288744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
CCR4B_ARATH3.688e-1332.43Carbon catabolite repressor protein 4 homolog 2 OS... [more]
CNOT6_RAT4.817e-1332.45CCR4-NOT transcription complex subunit 6 OS=Rattus... [more]
CNOT6_MOUSE4.817e-1332.45CCR4-NOT transcription complex subunit 6 OS=Mus mu... [more]
CCR4A_ARATH4.817e-1330.41Carbon catabolite repressor protein 4 homolog 1 OS... [more]
CNOT6_XENLA6.291e-1332.88CCR4-NOT transcription complex subunit 6 OS=Xenopu... [more]
CNOT6_HUMAN6.291e-1331.79CCR4-NOT transcription complex subunit 6 OS=Homo s... [more]
CCR4_USTMA6.291e-1333.12Glucose-repressible alcohol dehydrogenase transcri... [more]
CCR4_ASPCL1.073e-1233.11Glucose-repressible alcohol dehydrogenase transcri... [more]
CCR4_EMENI1.402e-1233.10Glucose-repressible alcohol dehydrogenase transcri... [more]
NOCT_HUMAN4.078e-1229.29Nocturnin OS=Homo sapiens GN=CCRN4L PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC02003H09SK IF1 Citrus clementina cDNA clone C02003H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288744 ID=CX288744; Name=CX288744; organism=Citrus clementina; type=EST; length=517bp
AACACCATTTCCTGTGGCTTCAATGGTCCCACCACACATTCCTCATCATC
ATCGCCGTCAACTCGTTCGTACTGCCGTCGATGGTACAACCCTCTCCGAC
GTAAGCCGTTCGATGAGCCTTCTCCTGACGTCCTCCGCCACTGGATCGAC
GCTGATCCTAATCCAATTTCATCTCAAGAGAGATTCTCGGTCGTGTCATA
TAACATATTGGGAGATAAAAATGCTTTCAAACATAGAGATTTATATCAAA
ATGTTCGGTATGAATACATGAAATGGAACCGTCGCAAAAGGTTAATATGC
CAAGAGTTGATTGGATTGAACCCGGATATTATCTGTATGCAAGAGGTGGA
CAGGTATTTTGATATTCTGAATGTTATGGAGAAAGCGGGATATGCTGGTT
GTTACAAGCGGCGCACTGGGGATAACGTTGATGGTTGTGCGATGTTTTGG
AAAGCTGATAAGTTTCGGTTATTAGAGCAAACAAGCATTGAATTTAAAGA
GTTTGGCCTTCGTGAAA
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