CX288744
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: CCR4B_ARATH (Carbon catabolite repressor protein 4 homolog 2 OS=Arabidopsis thaliana GN=CCR4-2 PE=2 SV=2) HSP 1 Score: 74.3294 bits (181), Expect = 3.688e-13 Identity = 48/148 (32.43%), Postives = 79/148 (53.38%), Query Frame = 1 Query: 88 NPLRRKPFDEPSPDVLRHWIDADPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRYFDIL-NVMEKAGYAGCYKRRTGD-------NVDGCAMFWKADKFRLLEQTSIEFKE 501 +P RK D + H +D D I S F+V+SYNIL D +A DLY + W R++ + +E++G D++C+QEV D + +I ++K GY YKR+T + +DGCA F++ D+F +++ +EF + Sbjct: 221 SPSPRKLIPVNGADGMGH-LDQDAR-IQSAGSFTVLSYNILSDTSASS--DLYSYCPPWALSWPYRRQNLLREIVGYRADVVCLQEVQSDHFHEIFAPELDKHGYQALYKRKTNEVLSGSTSAIDGCATFFRRDRFSHVKKYDVEFNK 364
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: CNOT6_RAT (CCR4-NOT transcription complex subunit 6 OS=Rattus norvegicus GN=Cnot6 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 4.817e-13 Identity = 49/151 (32.45%), Postives = 82/151 (54.30%), Query Frame = 1 Query: 97 RRKPFDEPSPDVLRHWIDA-DPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVD--RYFDILNV-MEKAGYAGCYKRRTG---------DNVDGCAMFWKADKFRLLEQTSIEFKEFGL 510 +R ++P P R WI +P+ FSV+ YN+L DK A R LY + W+ RK+ I QE++ N DII +QEV+ +Y+ V +++ GY G + ++ +VDGCA+F+K +KF L+++ ++EF + + Sbjct: 162 KRISTEQPPP---RSWIMLQEPDRTRPTALFSVMCYNVLCDKYAT--RQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAM 307
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: CNOT6_MOUSE (CCR4-NOT transcription complex subunit 6 OS=Mus musculus GN=Cnot6 PE=1 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 4.817e-13 Identity = 49/151 (32.45%), Postives = 82/151 (54.30%), Query Frame = 1 Query: 97 RRKPFDEPSPDVLRHWIDA-DPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVD--RYFDILNV-MEKAGYAGCYKRRTG---------DNVDGCAMFWKADKFRLLEQTSIEFKEFGL 510 +R ++P P R WI +P+ FSV+ YN+L DK A R LY + W+ RK+ I QE++ N DII +QEV+ +Y+ V +++ GY G + ++ +VDGCA+F+K +KF L+++ ++EF + + Sbjct: 162 KRISTEQPPP---RSWIMLQEPDRTRPTALFSVMCYNVLCDKYAT--RQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAM 307
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: CCR4A_ARATH (Carbon catabolite repressor protein 4 homolog 1 OS=Arabidopsis thaliana GN=CCR4-1 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 4.817e-13 Identity = 45/148 (30.41%), Postives = 80/148 (54.05%), Query Frame = 1 Query: 88 NPLRRKPFDEPSPDVLRHWIDADPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDR-YFD--ILNVMEKAGYAGCYKRRTGD-------NVDGCAMFWKADKFRLLEQTSIEFKE 501 +P R+ DV H +D++ P+S F+V+SYNIL D + D+Y + W R++ + +E++ DI+C+QEV +F+ L ++K GY G +KR+T + +DGCA F++ D+F +++ +EF + Sbjct: 218 SPSPRRLISISGTDVTGH-LDSNGRPLS-MGTFTVLSYNILSD--TYASSDIYSYCPTWALAWTYRRQNLLREIVKYRADIVCLQEVQNDHFEEFFLPELDKHGYQGLFKRKTNEVFIGNTNTIDGCATFFRRDRFSHVKKYEVEFNK 361
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: CNOT6_XENLA (CCR4-NOT transcription complex subunit 6 OS=Xenopus laevis GN=cnot6 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 6.291e-13 Identity = 48/146 (32.88%), Postives = 80/146 (54.79%), Query Frame = 1 Query: 112 DEPSPDVLRHWIDA-DPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVD--RYFDILNV-MEKAGYAGCYKRRTG---------DNVDGCAMFWKADKFRLLEQTSIEFKEFGL 510 ++P P R WI +P+ FSV+ YN+L DK A R LY + W+ RK+ I QE++ N DII +QEV+ +Y+ V +++ GY G + ++ +VDGCA+F+K +KF L+++ ++EF + + Sbjct: 162 EQPPP---RSWIMLQEPDRTRPTALFSVMCYNVLCDKYAT--RQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAM 302
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: CNOT6_HUMAN (CCR4-NOT transcription complex subunit 6 OS=Homo sapiens GN=CNOT6 PE=1 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 6.291e-13 Identity = 48/151 (31.79%), Postives = 82/151 (54.30%), Query Frame = 1 Query: 97 RRKPFDEPSPDVLRHWIDA-DPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVD--RYFDILNV-MEKAGYAGCYKRRTG---------DNVDGCAMFWKADKFRLLEQTSIEFKEFGL 510 +R ++P P R WI +P+ FSV+ YN+L DK A R LY + W+ RK+ I QE++ N DI+ +QEV+ +Y+ V +++ GY G + ++ +VDGCA+F+K +KF L+++ ++EF + + Sbjct: 162 KRITTEQPPP---RSWIMLQEPDRTRPTALFSVMCYNVLCDKYAT--RQLYGYCPSWALNWDYRKKAIIQEILSCNADIVSLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAM 307
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: CCR4_USTMA (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Ustilago maydis GN=CCR4 PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 6.291e-13 Identity = 51/154 (33.12%), Postives = 82/154 (53.25%), Query Frame = 1 Query: 118 PSPDVLRHWIDADPN----------PISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRYFD-ILNVMEKAGYAGCY-----KRRTGDN----VDGCAMFWKADKFRLLEQTSIEFKEFGLR 513 P P R WI DP+ ++QE F+V+SYNIL D+ A +Y + W+ RK I QE++ + DI C+QEV ++Y D L+ + + Y G + R D+ VDGCA+F+K++K++L+E+ +EF + L+ Sbjct: 272 PLPPPEREWIMIDPDLPDLDADKHANDATQESFNVLSYNILFDRYATAQ--MYGYTPSWALAWDYRKEFILQEVMSYSADICCLQEVGVEQYEDYFLHHLSQQDYEGVFYPKSRARTMRDDERRRVDGCAIFYKSNKYQLIEKQLVEFNQIALQ 423
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: CCR4_ASPCL (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Aspergillus clavatus GN=ccr4 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.073e-12 Identity = 49/148 (33.11%), Postives = 68/148 (45.95%), Query Frame = 1 Query: 106 PFDEPSPDVLRHWIDADPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDR------------YFDILNVMEKAGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLR 513 P P PD R W+ D +S E+ +V+SYN L D +A + Y R + W R+ LI EL DI+C+QE+D+ Y D V G A + VDGCA F+K KF LL++ I F + +R Sbjct: 274 PVHLPPPD--RDWVVLDETASASTEKITVLSYNTLCDSSATQSHYGYAPARV--LSWEFRRELILSELRSHGSDIVCLQEIDQGSYNEYFREQLAYNDYKGVYWPRGRAMGMQEEDAKGVDGCATFFKGSKFILLDKQLINFGQTAVR 417
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: CCR4_EMENI (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Emericella nidulans GN=ccr4 PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.402e-12 Identity = 47/142 (33.10%), Postives = 66/142 (46.48%), Query Frame = 1 Query: 124 PDVLRHWIDADPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDR------------YFDILNVMEKAGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLR 513 P R W+ D +S ++ SV+SYN L D +A + Y R + W R+ I EL +PDIIC+QE+D+ Y D V G A + VDGCA F+K KF LL++ I F + +R Sbjct: 289 PPPARDWLVLDETAATSPDKVSVLSYNTLCDSSATQSHYGYAPSRV--LSWEFRRETILNELRAHDPDIICLQEIDQGSYNEFFREQLAYSDYKGVFWPRGRAMGMQEEDAKGVDGCATFFKGSKFILLDKQVINFGQTAVR 428
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: NOCT_HUMAN (Nocturnin OS=Homo sapiens GN=CCRN4L PE=2 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 4.078e-12 Identity = 41/140 (29.29%), Postives = 68/140 (48.57%), Query Frame = 1 Query: 124 PDVLRHWIDADPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDRYFDILN-VMEKAGYAG---------CYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLR 513 P R ++D + S+ V+ +NIL + +D + E +KW RK LI +E++ PDI+C+QEVD YFD ++ + GY G C + DGCA+F+ ++F+L+ +I L+ Sbjct: 123 PRFQRDFVDLRTDCPSTHPPIRVMQWNILAQALG-EGKDNFVQCPVEALKWEERKCLILEEILAYQPDILCLQEVDHYFDTFQPLLSRLGYQGTFFPKPWSPCLDVEHNNGPDGCALFFLQNRFKLVNSANIRLTAMTLK 261 The following BLAST results are available for this feature:
BLAST of CX288744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 34
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288744 ID=CX288744; Name=CX288744; organism=Citrus clementina; type=EST; length=517bpback to top |