CX288744

Overview
NameCX288744
Unique NameCX288744
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length517
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10840 contig Ccv1_Contig10840:213..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: ANGE2_HUMAN (Protein angel homolog 2 OS=Homo sapiens GN=ANGEL2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.326e-12
Identity = 45/121 (37.19%), Postives = 65/121 (53.72%), Query Frame = 1
Query:  148 DADPNPISSQERF--SVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRY-FDILNVMEKAGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEF 495
            + DP    S+ +F  SV+SYNIL       +  LY++ R   + W+ R   I +E+   + D++C+QEV  D Y  +I   +E  GY   YK RTG   DGCA+ +K  KF LL    +EF
Sbjct:  153 NVDPKCEDSENKFDFSVMSYNILSQDLLEDNSHLYRHCRRPVLHWSFRFPNILKEIKHFDADVLCLQEVQEDHYGAEIRPSLESLGYHCEYKMRTGRKPDGCAICFKHSKFSLLSVNPVEF 273          
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: CCR4_ASPOR (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Aspergillus oryzae GN=ccr4 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.956e-12
Identity = 50/150 (33.33%), Postives = 73/150 (48.67%), Query Frame = 1
Query:  106 PFDEPSPDVLRHWIDADPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDR-----YFDILNVMEKAGYAGCY---------KRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLR 513
            P + P PD  R W+  D    +S E+ +V+SYN L D +A +    Y   R   + W  R+ +I  EL   + DI+C+QEVD+     YF     +   GY G Y         +     +VDGCA F+K  KF LL++  I F +  +R
Sbjct:  354 PENPPPPD--RDWVILDETAGTSTEKITVLSYNALCDSSATQSHFGYTPSRA--LSWEFRRDVILSELRSHDSDIVCLQEVDQGSYNGYFR--EQLAYNGYKGVYWPRGRAMGMQEEEAKSVDGCATFFKGTKFILLDKQMINFGQTAVR 497          
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: CCR4_ASPTN (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=ccr4 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.085e-12
Identity = 51/148 (34.46%), Postives = 69/148 (46.62%), Query Frame = 1
Query:  106 PFDEPSPDVLRHWIDADPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDR------------YFDILNVMEKAGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLR 513
            P   P PD  R W+  D    SS E+ +V+S+N L D +A      Y   R   + W  R+ LI  EL   + DI+C+QEVD+            Y D   V    G A   +     NVDGCA F+K  KF LL++  I F +  +R
Sbjct:  285 PVHLPPPD--RDWVILDDTS-SSTEKVTVLSHNALCDSSATSSHFGYTPSRA--LSWEFRRELILSELRSHDSDIVCLQEVDQGSYNGFFREQLAYNDYKGVYWPRGRAMGMQEEEAKNVDGCATFFKGSKFILLDKQMINFGQTAVR 427          
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: CCR4_NEOFI (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=ccr4 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.186e-11
Identity = 53/151 (35.10%), Postives = 69/151 (45.70%), Query Frame = 1
Query:  106 PFDEPSPDVLRHWIDADPNPISSQER---FSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDR------------YFDILNVMEKAGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLR 513
            P   P PD  R WI  D    SS  R    +V+SYN L D +A +    Y   R   + W  R+ LI  EL   + DIIC+QE+D+            Y D   V    G A   +      VDGCA F+KA KF LL++  I F +  +R
Sbjct:  354 PVHLPPPD--RDWIVLDETASSSNHRTDKVTVLSYNTLCDSSATQSHYGYAPARV--LSWEFRRELILNELRSHDSDIICLQEIDQGSYNEYFREQLAYNDYKGVYWPRGRAMGMQEEDAKCVDGCATFFKASKFILLDKQLINFGQTAVR 500          
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: ANGE2_BOVIN (Protein angel homolog 2 OS=Bos taurus GN=ANGEL2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.186e-11
Identity = 42/107 (39.25%), Postives = 59/107 (55.14%), Query Frame = 1
Query:  184 FSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRY-FDILNVMEKAGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEF 495
            FSV+SYNIL       +  LY++ R   + W+ R   I +E+   + D++C+QEV  D Y  +I   +E  GY   YK RTG   DGCA+ +K  KF LL    +EF
Sbjct:  167 FSVMSYNILSQDLLEDNSHLYKHCRRPVLHWSFRFPNILKEIKHFDADVLCLQEVQEDHYGTEIRPSLESLGYHCEYKMRTGRKPDGCAICFKHSKFSLLSVNPVEF 273          
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: ANGE2_DANRE (Protein angel homolog 2 OS=Danio rerio GN=angel2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.550e-11
Identity = 48/142 (33.80%), Postives = 73/142 (51.41%), Query Frame = 1
Query:  124 PDVLRHWID------ADPNPISSQER----FSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRY-FDILNVMEKAGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGL 510
            P++ RHW D      A P+    +++    FSV+SYNIL       +  LY++     + W  R   I +EL   + DI+C+QEV  D Y   I   +E  GY   +KRRTG   DGCA+ +K ++F L+    +E+   G+
Sbjct:  169 PELKRHWEDLSHLCKAAPSVNRGKQKWPFDFSVMSYNILSQDLLCDNTYLYRHCNPPVLDWRNRFPNIIKELEQYSADIMCLQEVQEDHYKQQIKPSLESLGYHCEFKRRTGLKPDGCAVIFKRERFSLVSCHPVEYFRRGV 310          
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: CNO6L_HUMAN (CCR4-NOT transcription complex subunit 6-like OS=Homo sapiens GN=CNOT6L PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.643e-11
Identity = 44/138 (31.88%), Postives = 76/138 (55.07%), Query Frame = 1
Query:  136 RHWIDA-DPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVD--RYFDI-LNVMEKAGYAGCYKRRTG---------DNVDGCAMFWKADKFRLLEQTSIEFKEFGL 510
            R WI   + + I     F+V+ YN+L DK A   R LY       + W  RK+ I +E++  + DII +QEV+  +YF + L  +++ GY G +  ++           +VDGCA+F+K +KF L+++ ++EF +  +
Sbjct:  172 RPWITLKERDQILPSASFTVMCYNVLCDKYAT--RQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVETEQYFTLFLPALKERGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAM 307          
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: CN6LA_XENLA (CCR4-NOT transcription complex subunit 6-like-A OS=Xenopus laevis GN=cnot6l-A PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.452e-11
Identity = 46/144 (31.94%), Postives = 78/144 (54.17%), Query Frame = 1
Query:  124 PDVLRH--WIDA-DPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVD--RYFDI-LNVMEKAGYAGCYKRRTG---------DNVDGCAMFWKADKFRLLEQTSIEFKEFGL 510
            P+ L H  WI   + + I     F+V+ YN+L DK A   R LY       + W  RK+ I  E+I  + DII +QEV+  +YF + +  +E+ GY G +  ++           +VDGCA+F++ +KF L+++ ++EF +  +
Sbjct:  161 PEQLPHRPWITLKERDQILPSVSFTVMCYNVLCDKYAT--RQLYGYCPSWALNWEYRKKGIMDEIISCDADIISLQEVETEQYFTLFMPALEERGYDGFFSPKSRAKIMSDQEKKHVDGCAIFFRTEKFSLVQKHTVEFNQIAM 302          
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: CCR4_YARLI (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Yarrowia lipolytica GN=CCR4 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.509e-11
Identity = 41/128 (32.03%), Postives = 66/128 (51.56%), Query Frame = 1
Query:  169 SSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVD--RYFDILNV-MEKAGYAGCY----------KRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLR 513
            +S + F+V+SYN L DK  +    ++       + W  R   + +E+IG + DI+C QEVD   + D  +  + + GYAG Y          K +    VDGCA+F+K   F L+E+ S++F    L+
Sbjct:  336 ASSDTFTVMSYNTLCDK--YTTVQMHGYTPLWALGWKHRSETLLKEVIGYDSDILCFQEVDGASFEDFWSPKLHQLGYAGLYHPKTRARTMSKEKDAKRVDGCAIFYKTKSFCLIEKLSLDFSSLALK 461          
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: CCR4_ASPNC (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=ccr4 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.509e-11
Identity = 51/151 (33.77%), Postives = 69/151 (45.70%), Query Frame = 1
Query:  106 PFDEPSPDVLRHWIDADPNPISSQ---ERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDR------------YFDILNVMEKAGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLR 513
            P   P PD  R WI  D    SS    E+ +V+S+N L D +A      Y   R   + W  R+ LI  EL   + DIIC+QE+D+            Y D   V    G A   +     +VDGCA F+K  KF LL++  I F +  +R
Sbjct:  274 PVHLPPPD--RDWIILDETASSSNSPTEKITVLSHNALCDSSATPSHFGYTPSRV--LSWEFRRELILSELRSHDSDIICLQEIDQGSYNGFFREQLAYNDYKGVYWPRGRAMGMQEEEAKSVDGCATFFKGSKFILLDKQMINFGQTAVR 420          
The following BLAST results are available for this feature:
BLAST of CX288744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
ANGE2_HUMAN5.326e-1237.19Protein angel homolog 2 OS=Homo sapiens GN=ANGEL2 ... [more]
CCR4_ASPOR6.956e-1233.33Glucose-repressible alcohol dehydrogenase transcri... [more]
CCR4_ASPTN9.085e-1234.46Glucose-repressible alcohol dehydrogenase transcri... [more]
CCR4_NEOFI1.186e-1135.10Glucose-repressible alcohol dehydrogenase transcri... [more]
ANGE2_BOVIN1.186e-1139.25Protein angel homolog 2 OS=Bos taurus GN=ANGEL2 PE... [more]
ANGE2_DANRE1.550e-1133.80Protein angel homolog 2 OS=Danio rerio GN=angel2 P... [more]
CNO6L_HUMAN2.643e-1131.88CCR4-NOT transcription complex subunit 6-like OS=H... [more]
CN6LA_XENLA3.452e-1131.94CCR4-NOT transcription complex subunit 6-like-A OS... [more]
CCR4_YARLI4.509e-1132.03Glucose-repressible alcohol dehydrogenase transcri... [more]
CCR4_ASPNC4.509e-1133.77Glucose-repressible alcohol dehydrogenase transcri... [more]

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Properties
Property NameValue
Genbank descriptionC02003H09SK IF1 Citrus clementina cDNA clone C02003H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288744 ID=CX288744; Name=CX288744; organism=Citrus clementina; type=EST; length=517bp
AACACCATTTCCTGTGGCTTCAATGGTCCCACCACACATTCCTCATCATC
ATCGCCGTCAACTCGTTCGTACTGCCGTCGATGGTACAACCCTCTCCGAC
GTAAGCCGTTCGATGAGCCTTCTCCTGACGTCCTCCGCCACTGGATCGAC
GCTGATCCTAATCCAATTTCATCTCAAGAGAGATTCTCGGTCGTGTCATA
TAACATATTGGGAGATAAAAATGCTTTCAAACATAGAGATTTATATCAAA
ATGTTCGGTATGAATACATGAAATGGAACCGTCGCAAAAGGTTAATATGC
CAAGAGTTGATTGGATTGAACCCGGATATTATCTGTATGCAAGAGGTGGA
CAGGTATTTTGATATTCTGAATGTTATGGAGAAAGCGGGATATGCTGGTT
GTTACAAGCGGCGCACTGGGGATAACGTTGATGGTTGTGCGATGTTTTGG
AAAGCTGATAAGTTTCGGTTATTAGAGCAAACAAGCATTGAATTTAAAGA
GTTTGGCCTTCGTGAAA
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