CX288744

Overview
NameCX288744
Unique NameCX288744
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length517
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10840 contig Ccv1_Contig10840:213..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: CCR4_ASPFU (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Aspergillus fumigatus GN=ccr4 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.509e-11
Identity = 53/156 (33.97%), Postives = 69/156 (44.23%), Query Frame = 1
Query:   91 PLRRKPFDEPSPDVLRHWIDADPNPISSQER---FSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDR------------YFDILNVMEKAGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLR 513
            PL       P PD  R WI  D    SS  R    +V+SYN L D +A +    Y   R   + W  R+ LI  EL   + DIIC+QE+D+            Y D   V    G A   +      VDGCA F+K  KF LL++  I F +  +R
Sbjct:  295 PLTLMAVHLPPPD--RDWIVLDETASSSNHRTDKVTVLSYNTLCDSSATQSHYGYAPARV--LSWEFRRELILNELRSHDSDIICLQEIDQGSYNEYFREQLAYNDYKGVYWPRGRAMGMQEEDAKCVDGCATFFKGSKFILLDKQLINFGQTAVR 446          
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: CNO6L_MOUSE (CCR4-NOT transcription complex subunit 6-like OS=Mus musculus GN=Cnot6l PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 5.888e-11
Identity = 44/138 (31.88%), Postives = 75/138 (54.35%), Query Frame = 1
Query:  136 RHWIDA-DPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVD--RYFDI-LNVMEKAGYAGCYKRRTG---------DNVDGCAMFWKADKFRLLEQTSIEFKEFGL 510
            R WI   + + I     F+V+ YN+L DK A   R LY       + W  RK+ I +E++  + DII +QEV+  +YF + L  ++  GY G +  ++           +VDGCA+F+K +KF L+++ ++EF +  +
Sbjct:  172 RPWITLKERDQILPSASFTVMCYNVLCDKYAT--RQLYGYCPSWALNWEYRKKGIMEEIVNWDADIISLQEVETEQYFTLFLPALKDRGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAM 307          
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: ANGE2_MOUSE (Protein angel homolog 2 OS=Mus musculus GN=Angel2 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.888e-11
Identity = 40/107 (37.38%), Postives = 59/107 (55.14%), Query Frame = 1
Query:  184 FSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRY-FDILNVMEKAGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEF 495
            FSV+SYNIL       +  LY++ R   + W+ R   I +E+   + D++C+QEV  D Y  +I   +E  GY   YK +TG   DGCA+ +K  +F LL    +EF
Sbjct:  167 FSVMSYNILSQDLLEDNSHLYRHCRRPVLHWSFRFPNILKEIKHFDADVLCLQEVQEDHYGTEIRPSLESLGYHCEYKMKTGRKPDGCAICFKHSRFSLLSVNPVEF 273          
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: NOCT_XENLA (Nocturnin OS=Xenopus laevis GN=ccrn4l PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.691e-11
Identity = 39/118 (33.05%), Postives = 61/118 (51.69%), Query Frame = 1
Query:  169 SSQER-FSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDRYFDILN-VMEKAGY---------AGCYKRRTGDNVDGCAMFWKADKFRLLEQTSI 489
            S Q R F V+ +NIL      + +D +     E +KW  RK LI +E++   PD++C+QEVD YFD    ++ + GY         + C      +  DGCA+F+  D+F+L+    I
Sbjct:   94 SQQPRTFRVMQWNILAQALG-EGKDNFIMCPMEALKWEERKYLILEEILMYQPDVLCLQEVDHYFDTFQPILSRLGYQCTFLAKPWSPCLDVEHNNGPDGCALFFLQDRFQLVNSAKI 210          
The following BLAST results are available for this feature:
BLAST of CX288744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
CCR4_ASPFU4.509e-1133.97Glucose-repressible alcohol dehydrogenase transcri... [more]
CNO6L_MOUSE5.888e-1131.88CCR4-NOT transcription complex subunit 6-like OS=M... [more]
ANGE2_MOUSE5.888e-1137.38Protein angel homolog 2 OS=Mus musculus GN=Angel2 ... [more]
NOCT_XENLA7.691e-1133.05Nocturnin OS=Xenopus laevis GN=ccrn4l PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC02003H09SK IF1 Citrus clementina cDNA clone C02003H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288744 ID=CX288744; Name=CX288744; organism=Citrus clementina; type=EST; length=517bp
AACACCATTTCCTGTGGCTTCAATGGTCCCACCACACATTCCTCATCATC
ATCGCCGTCAACTCGTTCGTACTGCCGTCGATGGTACAACCCTCTCCGAC
GTAAGCCGTTCGATGAGCCTTCTCCTGACGTCCTCCGCCACTGGATCGAC
GCTGATCCTAATCCAATTTCATCTCAAGAGAGATTCTCGGTCGTGTCATA
TAACATATTGGGAGATAAAAATGCTTTCAAACATAGAGATTTATATCAAA
ATGTTCGGTATGAATACATGAAATGGAACCGTCGCAAAAGGTTAATATGC
CAAGAGTTGATTGGATTGAACCCGGATATTATCTGTATGCAAGAGGTGGA
CAGGTATTTTGATATTCTGAATGTTATGGAGAAAGCGGGATATGCTGGTT
GTTACAAGCGGCGCACTGGGGATAACGTTGATGGTTGTGCGATGTTTTGG
AAAGCTGATAAGTTTCGGTTATTAGAGCAAACAAGCATTGAATTTAAAGA
GTTTGGCCTTCGTGAAA
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