CX288750

Overview
NameCX288750
Unique NameCX288750
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length435
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288750 vs. ExPASy Swiss-Prot
Match: TIP32_ARATH (Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 8.483e-32
Identity = 69/141 (48.94%), Postives = 86/141 (60.99%), Query Frame = 3
Query:   21 RNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKL-----THNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGV 428
            R    G   EATHPD++RA LAEF+ST +FVFAGEGS +A +KL      H G NTP                      N+SGGHVNPAVTF A +GG IS++R I YW+AQL+G+ +ACLLL+  TNG     F ++SGV
Sbjct:    7 RAYGFGRADEATHPDSIRATLAEFLSTFVFVFAGEGSILALDKLYWDTAAHTGTNTPGGLVLVALAHALALFAAVSAAINVSGGHVNPAVTFAALIGGRISVIRAIYYWVAQLIGAILACLLLRLATNGLRPVGFHVASGV 147          
BLAST of CX288750 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.447e-31
Identity = 69/141 (48.94%), Postives = 87/141 (61.70%), Query Frame = 3
Query:    9 IMPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVG 431
            + P R   VG   +ATHPD +RAA++EFI+T IFVFA EGS ++  K+ H+  +T                       NISGGHVNPAVTFGA VGG +SL+R +LYW+AQLLG+  A LLL+  T G     FAL+SGVG
Sbjct:    5 VRPGRRFTVGRSEDATHPDTIRAAISEFIATAIFVFAAEGSVLSLGKMYHD-MSTAGGLVAVALAHALALAVAVAVAVNISGGHVNPAVTFGALVGGRVSLVRAVLYWVAQLLGAVAATLLLRLATGGMRPPGFALASGVG 144          
BLAST of CX288750 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.468e-31
Identity = 69/140 (49.29%), Postives = 87/140 (62.14%), Query Frame = 3
Query:   12 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVG 431
            M  R  + G   EATHPD++RA+LAEF ST IFVFAGEGSG+A  K+  + A +                       ++SGGHVNPAV+FGA +GG IS++R + YWIAQLLGS VA L+L+ VTN    S F +S GVG
Sbjct:    1 MATRRYSFGRTDEATHPDSMRASLAEFASTFIFVFAGEGSGLALVKIYQDSAFSAGELLALALAHAFALFAAVSASMHVSGGHVNPAVSFGALIGGRISVIRAVYYWIAQLLGSIVAALVLRLVTNNMRPSGFHVSPGVG 140          
BLAST of CX288750 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 9.379e-31
Identity = 67/139 (48.20%), Postives = 86/139 (61.87%), Query Frame = 3
Query:   15 PIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVG 431
            P R   VG   +ATHPD +RAA++EF++T IFVFA EGS ++  KL +   +TP                      NISGGHVNPA+TFGA +GG +SL+R + YW+AQLLG+ VA LLL+  T G     FAL+SGVG
Sbjct:    8 PGRRFTVGRSEDATHPDTIRAAISEFLATAIFVFAAEGSILSLGKL-YQDMSTPGGLVAVSLAHALALAVAVAVAVNISGGHVNPAITFGALLGGRLSLIRALFYWLAQLLGAVVATLLLRLTTGGMRPPGFALASGVG 145          
BLAST of CX288750 vs. ExPASy Swiss-Prot
Match: TIP32_MAIZE (Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.564e-30
Identity = 67/139 (48.20%), Postives = 85/139 (61.15%), Query Frame = 3
Query:   21 RNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGA--NTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVG 431
            R   VG   +ATHPD +RAA++EFI+T IFVFA EGS ++  K+ H+ +  +T                       N+SGGHVNPAVTFGA VGG +SL+R +LYW AQLLG+  A LLL+  T G     FAL+SGVG
Sbjct:   11 RRFTVGRSEDATHPDTIRAAISEFIATAIFVFAAEGSVLSLGKMYHDHSTISTAGGLVAVALAHALGLAVAVAVAVNVSGGHVNPAVTFGALVGGRVSLVRAVLYWAAQLLGAVAATLLLRLATGGARPPGFALASGVG 149          
BLAST of CX288750 vs. ExPASy Swiss-Prot
Match: TIP23_ARATH (Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.017e-29
Identity = 67/136 (49.26%), Postives = 86/136 (63.24%), Query Frame = 3
Query:   27 IAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGA 434
            I VG   ++    +L+A L+EFI+TL+FVFAG GS +AF KLT +GA  P+                     NISGGH+NPAVT G  +GGNI+L+ G  YWIAQ LGS VACLLL FVTNG++     +S+G+GA
Sbjct:    4 IEVGSVGDSFSVSSLKAYLSEFIATLLFVFAGVGSAVAFAKLTSDGALDPAGLVAIAIAHAFALFVGVSIAANISGGHLNPAVTLGLAIGGNITLITGFFYWIAQCLGSIVACLLLVFVTNGKSVPTHGVSAGLGA 139          
BLAST of CX288750 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 8.778e-29
Identity = 65/136 (47.79%), Postives = 87/136 (63.97%), Query Frame = 3
Query:   27 IAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGA 434
            IA G   ++    +++A +AEFI+TL+FVFAG GS +A+NKLT + A  P+                     N+SGGH+NPAVT G  VGGNI++L G+ YWIAQ LGSTVACLLLKFVTNG +     +++G+ A
Sbjct:    4 IAFGSIGDSFSVASIKAYVAEFIATLLFVFAGVGSAIAYNKLTSDAALDPAGLVAVAVAHAFALFVGVSMAANVSGGHLNPAVTLGLAVGGNITILTGLFYWIAQCLGSTVACLLLKFVTNGLSVPTHGVAAGMDA 139          
BLAST of CX288750 vs. ExPASy Swiss-Prot
Match: TIP2_TOBAC (Probable aquaporin TIP-type RB7-18C OS=Nicotiana tabacum PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 1.146e-28
Identity = 66/134 (49.25%), Postives = 85/134 (63.43%), Query Frame = 3
Query:   27 IAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGV 428
            IA G   ++    +L+A +AEFI+TL+FVFAG GS +A+NKLT + A  P+                     NISGGH+NPAVT G  VGGNI++L G  YWIAQLLGSTVACLLLK+VTNG       +++G+
Sbjct:    4 IAFGSIGDSFSVGSLKAYVAEFIATLLFVFAGVGSAIAYNKLTADAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITILTGFFYWIAQLLGSTVACLLLKYVTNGLAVPTHGVAAGL 137          
BLAST of CX288750 vs. ExPASy Swiss-Prot
Match: TIP1_TOBAC (Probable aquaporin TIP-type RB7-5A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.146e-28
Identity = 66/134 (49.25%), Postives = 85/134 (63.43%), Query Frame = 3
Query:   27 IAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGV 428
            IA G   ++    +L+A +AEFI+TL+FVFAG GS +A+NKLT + A  P+                     NISGGH+NPAVT G  VGGNI++L G  YWIAQLLGSTVACLLLK+VTNG       +++G+
Sbjct:    4 IAFGSIGDSFSVGSLKAYVAEFIATLLFVFAGVGSAIAYNKLTADAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITILTGFFYWIAQLLGSTVACLLLKYVTNGLAVPTHGVAAGL 137          
BLAST of CX288750 vs. ExPASy Swiss-Prot
Match: TIP22_ARATH (Probable aquaporin TIP2-2 OS=Arabidopsis thaliana GN=TIP2-2 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 7.431e-28
Identity = 64/136 (47.06%), Postives = 85/136 (62.50%), Query Frame = 3
Query:   27 IAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGA 434
            I +G   ++    +L+A L+EFI+TL+FVFAG GS +AF KLT + A  P+                     NISGGH+NPAVT G  VGGNI+++ G  YWIAQ LGS VACLLL FVTNG++     +++G+GA
Sbjct:    4 IEIGSVGDSFSVASLKAYLSEFIATLLFVFAGVGSALAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITVITGFFYWIAQCLGSIVACLLLVFVTNGESVPTHGVAAGLGA 139          
The following BLAST results are available for this feature:
BLAST of CX288750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
TIP32_ARATH8.483e-3248.94Probable aquaporin TIP3-2 OS=Arabidopsis thaliana ... [more]
TIP31_MAIZE1.447e-3148.94Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]
TIPA_PHAVU2.468e-3149.29Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]
TIP31_ORYSJ9.379e-3148.20Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]
TIP32_MAIZE3.564e-3048.20Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1[more]
TIP23_ARATH3.017e-2949.26Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3... [more]
TIP_ANTMA8.778e-2947.79Probable aquaporin TIP-type OS=Antirrhinum majus G... [more]
TIP2_TOBAC1.146e-2849.25Probable aquaporin TIP-type RB7-18C OS=Nicotiana t... [more]
TIP1_TOBAC1.146e-2849.25Probable aquaporin TIP-type RB7-5A OS=Nicotiana ta... [more]
TIP22_ARATH7.431e-2847.06Probable aquaporin TIP2-2 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionC02004A05SK IF1 Citrus clementina cDNA clone C02004A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288750 ID=CX288750; Name=CX288750; organism=Citrus clementina; type=EST; length=435bp
TGATCTCCATCATGCCGATCAGAAACATTGCCGTTGGCCATCCCCGTGAG
GCGACTCATCCAGATGCCCTAAGGGCAGCCCTAGCAGAGTTCATCTCAAC
TCTAATATTTGTCTTTGCCGGTGAAGGCTCGGGCATGGCCTTCAACAAGC
TCACTCACAACGGCGCCAACACCCCCTCCGGCCTCGTCGCCGCCTCTGTT
GCTCACGCTTTCGCCCTTTTCGTTGCTGTCGCCGTTGGCGCCAACATTTC
CGGTGGCCACGTTAATCCTGCTGTCACCTTTGGCGCCTTCGTTGGAGGTA
ACATCTCCCTTCTACGAGGCATCCTCTACTGGATCGCCCAGCTTCTTGGA
TCCACCGTCGCATGCTTGCTTCTTAAGTTCGTTACCAACGGCCAGACCAC
ATCTGCTTTTGCTCTCTCATCTGGAGTTGGTGCAT
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