CX288757
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_PROMM (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplA PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 4.741e-22 Identity = 60/154 (38.96%), Postives = 86/154 (55.84%), Query Frame = 1 Query: 73 KKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 K E R V ++AI+ VK NA A FDET+EAHVRL I P+ T+ +R T+ LP G ++VR L+E I G++D + +T MP++ K+ ++L GLMPNPK GTVT D+A A++E K G ++F+ D Sbjct: 14 KVEDR-VYQPLEAIQLVKENATAKFDETIEAHVRLGIDPKYTDQQLRTTVALPQGTGQSVRIAVISRGEKLAEAKTAGAELAGDDDLVESIGK-GQMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLAAAIKEFKAGKLEFRAD 165
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_SYNS3 (50S ribosomal protein L1 OS=Synechococcus sp. (strain CC9311) GN=rplA PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 6.192e-22 Identity = 57/144 (39.58%), Postives = 82/144 (56.94%), Query Frame = 1 Query: 103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 ++AI+ VK NA A FDET+EAHVRL I P+ T+ +R T+ LP G + VR L+E I S G+++ + +T MP++ K+ ++L GLMPNPK GTVT D+A A+QE K G ++F+ D Sbjct: 23 LEAIQLVKENATAKFDETMEAHVRLGIDPKYTDQQLRTTVALPQGTGQTVRIAVITRGEKVAEAKAAGAELSGDEDLVEAI-SKGEMNFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLASAIQEFKAGKLEFRAD 165
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_PROM3 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9303) GN=rplA PE=3 SV=2) HSP 1 Score: 103.605 bits (257), Expect = 6.192e-22 Identity = 60/154 (38.96%), Postives = 86/154 (55.84%), Query Frame = 1 Query: 73 KKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 K E R V ++AI+ VK NA A FDET+EAHVRL I P+ T+ +R T+ LP G ++VR L+E I G++D + +T MP++ K+ ++L GLMPNPK GTVT D+A A++E K G ++F+ D Sbjct: 14 KVEDR-VYQPIEAIQLVKENATAKFDETIEAHVRLGIDPKYTDQQLRTTVALPQGTGQSVRIAVITRGEKLAEAKTAGAELAGDDDLVESIGK-GQMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLAAAIKEFKAGKLEFRAD 165
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BEUC1 (50S ribosomal protein L1 OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=rplA PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 8.087e-22 Identity = 55/144 (38.19%), Postives = 80/144 (55.56%), Query Frame = 1 Query: 103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 ++A++ KA A FD TVE RL + PRK + +VRGT+NLPHG K R +LIE++A G +D + +T M ++ ++ ++L GLMPNP+ GTVT DVA+AV+E K G I F++D Sbjct: 24 LEAVRLAKAGASTKFDSTVEVAFRLGVDPRKADQMVRGTVNLPHGTGKTARVLVFAVGERAEQARAAGADEVGGDELIEKVAG-GYVDFDAAVATPDLMGKVGRLGRVLGPRGLMPNPRTGTVTMDVAKAVEEIKGGKIDFRVD 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_SYNPX (50S ribosomal protein L1 OS=Synechococcus sp. (strain WH8102) GN=rplA PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.056e-21 Identity = 61/156 (39.10%), Postives = 88/156 (56.41%), Query Frame = 1 Query: 67 SKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 + K E R V + ++AI VK NA A FDET+EAHVRL I P+ T+ +R T+ LP+G + VR L+E IA G+++ + +T MP++ K+ ++L GLMPNPK GTVT D+A A+QE K G ++F+ D Sbjct: 12 ASKIEDR-VYEPLEAIALVKDNATAKFDETMEAHVRLGIDPKYTDQQLRTTVALPNGTGQTVRIAVVTRGEKVAEAKAAGAELAGDEDLVETIAK-GEMEFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTIDLAGAIQEFKAGKLEFRAD 165
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_PROMA (50S ribosomal protein L1 OS=Prochlorococcus marinus GN=rplA PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.056e-21 Identity = 59/160 (36.88%), Postives = 89/160 (55.62%), Query Frame = 1 Query: 55 IKPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 +K S K E + L +AI+ VK NA A FDET+EAH+RL I P+ T+ +R T++LP G + VR +LI+ I S G+++ + ST MP++ K+ ++L GLMPNPK GTVT D+ +++E K G ++F+ D Sbjct: 8 MKSLSAKVEDKSYAPL-EAIQLVKENANAKFDETIEAHIRLGIDPKYTDQQIRTTVSLPKGTGQKVRIAVIAKGEKVAEANSAGADLAGEEELIDSI-SKGEMNFDLLISTPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLISSIKEFKAGKLEFRAD 165
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_SYNSC (50S ribosomal protein L1 OS=Synechococcus sp. (strain CC9605) GN=rplA PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.379e-21 Identity = 56/144 (38.89%), Postives = 82/144 (56.94%), Query Frame = 1 Query: 103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 ++AI VK NA A FDET+EAHVRL I P+ T+ +R T+ LP+G ++VR L+E I S G++D + +T MP++ K+ ++L GLMPNPK GTVT D+ A++E K G ++F+ D Sbjct: 23 LEAIALVKDNANAKFDETMEAHVRLGIDPKYTDQQLRTTVALPNGTGQSVRIAVVTRGEKVAEAKAAGAELAGEEDLVESI-SKGEMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLEAAIKEFKAGKLEFRAD 165
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_SINMW (50S ribosomal protein L1 OS=Sinorhizobium medicae (strain WSM419) GN=rplA PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.379e-21 Identity = 52/145 (35.86%), Postives = 82/145 (56.55%), Query Frame = 1 Query: 100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 L +A+ +K A A FDET+E + L + PR + +VRG +NLP+G ++VR +L+E I GK+D ++C +T MP + ++ K+L G+MPNPK GTVT DVA AV+ +K G ++F+++ Sbjct: 23 LTEAVTMIKERATAKFDETIEVAMNLGVDPRHADQMVRGVVNLPNGTGRSVRVAVFARGAKADEAKAAGADVVGAEELVE-IVQGGKIDFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTMDVAGAVKASKGGAVEFRVE 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_SILPO (50S ribosomal protein L1 OS=Silicibacter pomeroyi GN=rplA PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.379e-21 Identity = 57/147 (38.78%), Postives = 81/147 (55.10%), Query Frame = 1 Query: 94 LDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 L + A+ +K+ A A FDETVE + L + PR + +VRG + LP+G K VR L+E I SGK++ ++C +T MP + ++ KIL LMPNPK GTVT DVA+AVQ AK G ++FK++ Sbjct: 21 LSVEQAVALIKSAASAKFDETVEIAMNLGVDPRHADQMVRGVVGLPNGTGKTVRVAVFARGPKAEEAQAAGADIVGAEDLMETI-QSGKIEFDRCIATPDMMPVVGRLGKILGPRNLMPNPKVGTVTMDVAQAVQNAKGGEVQFKVE 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_PROMP (50S ribosomal protein L1 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rplA PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.379e-21 Identity = 58/160 (36.25%), Postives = 88/160 (55.00%), Query Frame = 1 Query: 55 IKPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 +K S K E R L +A+ VK NA A FDET+EAH+RL I P+ T+ +R T+ LP+G ++++ L+E I + G +D + +T MP++ K+ ++L GLMPNPK GTVT D+A A++E K G ++F+ D Sbjct: 8 MKALSTKIEDRTYAPL-EALGIVKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVALPNGTGQSIKIAVITSGENVAKAKSAGADLFGEEDLVESI-NKGNMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTGDIASAIKEFKAGKLEFRAD 165 The following BLAST results are available for this feature:
BLAST of CX288757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288757 ID=CX288757; Name=CX288757; organism=Citrus clementina; type=EST; length=538bpback to top |