CX288757

Overview
NameCX288757
Unique NameCX288757
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_PROMM (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 4.741e-22
Identity = 60/154 (38.96%), Postives = 86/154 (55.84%), Query Frame = 1
Query:   73 KKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            K E R V   ++AI+ VK NA A FDET+EAHVRL I P+ T+  +R T+ LP G  ++VR                         L+E I   G++D +   +T   MP++ K+ ++L   GLMPNPK GTVT D+A A++E K G ++F+ D
Sbjct:   14 KVEDR-VYQPLEAIQLVKENATAKFDETIEAHVRLGIDPKYTDQQLRTTVALPQGTGQSVRIAVISRGEKLAEAKTAGAELAGDDDLVESIGK-GQMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLAAAIKEFKAGKLEFRAD 165          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_SYNS3 (50S ribosomal protein L1 OS=Synechococcus sp. (strain CC9311) GN=rplA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.192e-22
Identity = 57/144 (39.58%), Postives = 82/144 (56.94%), Query Frame = 1
Query:  103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            ++AI+ VK NA A FDET+EAHVRL I P+ T+  +R T+ LP G  + VR                         L+E I S G+++ +   +T   MP++ K+ ++L   GLMPNPK GTVT D+A A+QE K G ++F+ D
Sbjct:   23 LEAIQLVKENATAKFDETMEAHVRLGIDPKYTDQQLRTTVALPQGTGQTVRIAVITRGEKVAEAKAAGAELSGDEDLVEAI-SKGEMNFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLASAIQEFKAGKLEFRAD 165          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_PROM3 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9303) GN=rplA PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 6.192e-22
Identity = 60/154 (38.96%), Postives = 86/154 (55.84%), Query Frame = 1
Query:   73 KKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            K E R V   ++AI+ VK NA A FDET+EAHVRL I P+ T+  +R T+ LP G  ++VR                         L+E I   G++D +   +T   MP++ K+ ++L   GLMPNPK GTVT D+A A++E K G ++F+ D
Sbjct:   14 KVEDR-VYQPIEAIQLVKENATAKFDETIEAHVRLGIDPKYTDQQLRTTVALPQGTGQSVRIAVITRGEKLAEAKTAGAELAGDDDLVESIGK-GQMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLAAAIKEFKAGKLEFRAD 165          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BEUC1 (50S ribosomal protein L1 OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=rplA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.087e-22
Identity = 55/144 (38.19%), Postives = 80/144 (55.56%), Query Frame = 1
Query:  103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            ++A++  KA A   FD TVE   RL + PRK + +VRGT+NLPHG  K  R                        +LIE++A  G +D +   +T   M ++ ++ ++L   GLMPNP+ GTVT DVA+AV+E K G I F++D
Sbjct:   24 LEAVRLAKAGASTKFDSTVEVAFRLGVDPRKADQMVRGTVNLPHGTGKTARVLVFAVGERAEQARAAGADEVGGDELIEKVAG-GYVDFDAAVATPDLMGKVGRLGRVLGPRGLMPNPRTGTVTMDVAKAVEEIKGGKIDFRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_SYNPX (50S ribosomal protein L1 OS=Synechococcus sp. (strain WH8102) GN=rplA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.056e-21
Identity = 61/156 (39.10%), Postives = 88/156 (56.41%), Query Frame = 1
Query:   67 SKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            + K E R V + ++AI  VK NA A FDET+EAHVRL I P+ T+  +R T+ LP+G  + VR                         L+E IA  G+++ +   +T   MP++ K+ ++L   GLMPNPK GTVT D+A A+QE K G ++F+ D
Sbjct:   12 ASKIEDR-VYEPLEAIALVKDNATAKFDETMEAHVRLGIDPKYTDQQLRTTVALPNGTGQTVRIAVVTRGEKVAEAKAAGAELAGDEDLVETIAK-GEMEFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTIDLAGAIQEFKAGKLEFRAD 165          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_PROMA (50S ribosomal protein L1 OS=Prochlorococcus marinus GN=rplA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.056e-21
Identity = 59/160 (36.88%), Postives = 89/160 (55.62%), Query Frame = 1
Query:   55 IKPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +K  S K E +    L +AI+ VK NA A FDET+EAH+RL I P+ T+  +R T++LP G  + VR                        +LI+ I S G+++ +   ST   MP++ K+ ++L   GLMPNPK GTVT D+  +++E K G ++F+ D
Sbjct:    8 MKSLSAKVEDKSYAPL-EAIQLVKENANAKFDETIEAHIRLGIDPKYTDQQIRTTVSLPKGTGQKVRIAVIAKGEKVAEANSAGADLAGEEELIDSI-SKGEMNFDLLISTPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLISSIKEFKAGKLEFRAD 165          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_SYNSC (50S ribosomal protein L1 OS=Synechococcus sp. (strain CC9605) GN=rplA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.379e-21
Identity = 56/144 (38.89%), Postives = 82/144 (56.94%), Query Frame = 1
Query:  103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            ++AI  VK NA A FDET+EAHVRL I P+ T+  +R T+ LP+G  ++VR                         L+E I S G++D +   +T   MP++ K+ ++L   GLMPNPK GTVT D+  A++E K G ++F+ D
Sbjct:   23 LEAIALVKDNANAKFDETMEAHVRLGIDPKYTDQQLRTTVALPNGTGQSVRIAVVTRGEKVAEAKAAGAELAGEEDLVESI-SKGEMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLEAAIKEFKAGKLEFRAD 165          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_SINMW (50S ribosomal protein L1 OS=Sinorhizobium medicae (strain WSM419) GN=rplA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.379e-21
Identity = 52/145 (35.86%), Postives = 82/145 (56.55%), Query Frame = 1
Query:  100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            L +A+  +K  A A FDET+E  + L + PR  + +VRG +NLP+G  ++VR                        +L+E I   GK+D ++C +T   MP + ++ K+L   G+MPNPK GTVT DVA AV+ +K G ++F+++
Sbjct:   23 LTEAVTMIKERATAKFDETIEVAMNLGVDPRHADQMVRGVVNLPNGTGRSVRVAVFARGAKADEAKAAGADVVGAEELVE-IVQGGKIDFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTMDVAGAVKASKGGAVEFRVE 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_SILPO (50S ribosomal protein L1 OS=Silicibacter pomeroyi GN=rplA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.379e-21
Identity = 57/147 (38.78%), Postives = 81/147 (55.10%), Query Frame = 1
Query:   94 LDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            L +  A+  +K+ A A FDETVE  + L + PR  + +VRG + LP+G  K VR                         L+E I  SGK++ ++C +T   MP + ++ KIL    LMPNPK GTVT DVA+AVQ AK G ++FK++
Sbjct:   21 LSVEQAVALIKSAASAKFDETVEIAMNLGVDPRHADQMVRGVVGLPNGTGKTVRVAVFARGPKAEEAQAAGADIVGAEDLMETI-QSGKIEFDRCIATPDMMPVVGRLGKILGPRNLMPNPKVGTVTMDVAQAVQNAKGGEVQFKVE 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_PROMP (50S ribosomal protein L1 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rplA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.379e-21
Identity = 58/160 (36.25%), Postives = 88/160 (55.00%), Query Frame = 1
Query:   55 IKPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +K  S K E R    L +A+  VK NA A FDET+EAH+RL I P+ T+  +R T+ LP+G  ++++                         L+E I + G +D +   +T   MP++ K+ ++L   GLMPNPK GTVT D+A A++E K G ++F+ D
Sbjct:    8 MKALSTKIEDRTYAPL-EALGIVKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVALPNGTGQSIKIAVITSGENVAKAKSAGADLFGEEDLVESI-NKGNMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTGDIASAIKEFKAGKLEFRAD 165          
The following BLAST results are available for this feature:
BLAST of CX288757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_PROMM4.741e-2238.9650S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_SYNS36.192e-2239.5850S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RL1_PROM36.192e-2238.9650S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_BEUC18.087e-2238.1950S ribosomal protein L1 OS=Beutenbergia cavernae ... [more]
RL1_SYNPX1.056e-2139.1050S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RL1_PROMA1.056e-2136.8850S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_SYNSC1.379e-2138.8950S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RL1_SINMW1.379e-2135.8650S ribosomal protein L1 OS=Sinorhizobium medicae ... [more]
RL1_SILPO1.379e-2138.7850S ribosomal protein L1 OS=Silicibacter pomeroyi ... [more]
RL1_PROMP1.379e-2136.2550S ribosomal protein L1 OS=Prochlorococcus marinu... [more]

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Properties
Property NameValue
Genbank descriptionC02004A12SK IF1 Citrus clementina cDNA clone C02004A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288757 ID=CX288757; Name=CX288757; organism=Citrus clementina; type=EST; length=538bp
CTGCAGGAATTCGCACGAGGGCAGGCGCAGGTGTCTGTCCCCTACCCACT
GTTGATTAAGCCGGAGAGTAAGAAGAAAGAGAGCAGACCGGTTCTTGATT
TGATGGACGCCATCAAACAAGTCAAGGCCAATGCCAAGGCTACATTTGAT
GAAACTGTTGAAGCTCATGTACGATTGGCCATTCCTCCTCGCAAAACTGA
GCTGATAGTTCGTGGTACTATGAATCTTCCGCATGGTGATAAGAAGGCCG
TCAGGGTGGCTTTCTTTGCTGAAGGGGCTGATGCGGAAGAAGCCAGAGCT
GCTGGAGCTGATGTTGTTGGTGGTTTAAAACTTATTGAGGAAATTGCAAG
CAGTGGCAAGCTTGATGTTGAGAAATGCTTCTCAACGCGTCAATTCATGC
CTCGTCTGTTCAAGATATCAAAGATTCTTAATCAACATGGTTTGATGCCA
AATCCTAAACAAGGTACAGTAACCAATGACGTTGCTAGAGCGGTACAAGA
AGCAAAACAGGGTCACATTAAATTTAAAATGGATAACA
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