CX288757

Overview
NameCX288757
Unique NameCX288757
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_CORJK (50S ribosomal protein L1 OS=Corynebacterium jeikeium (strain K411) GN=rplA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.438e-20
Identity = 54/142 (38.03%), Postives = 77/142 (54.23%), Query Frame = 1
Query:  109 AIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            A K VK  +   FD TV+  +RL + PRK + +VRGT++LP+G  K VR                        +LIE+I   G  D +   +T   M ++ +++++L   GLMPNPK GTVT DVA+AV E K G I F++D
Sbjct:   26 AAKAVKETSSKNFDATVDVAIRLGVDPRKADQLVRGTVSLPNGTGKEVRVVVFAEGPNATAAEEAGADVVGTAELIEKI-QGGWTDFDAAIATPDQMAKVGRVARVLGPRGLMPNPKTGTVTTDVAKAVAEIKGGKISFRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_CORDI (50S ribosomal protein L1 OS=Corynebacterium diphtheriae GN=rplA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.438e-20
Identity = 53/159 (33.33%), Postives = 88/159 (55.35%), Query Frame = 1
Query:   58 KPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            K  ++K +   +   + A + VK  +    D TV+  +RL + PRK + +VRGT++LP+G  K+VR                        +LIE+I ++G ++ +   +T   M ++ +++++L   GLMPNPK GTVTNDVA+A+ E K G I F++D
Sbjct:    9 KAAAEKIDKGRLYTPLKAAELVKETSSKNCDATVDVAIRLGVDPRKADQLVRGTVSLPNGTGKSVRVAVFAEGEKATEAQAAGADIVGTTELIEQI-TAGTIEFDVAIATPDQMAKVGRVARVLGPRGLMPNPKTGTVTNDVAKAIAEVKGGKISFRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_RHOPB (50S ribosomal protein L1 OS=Rhodopseudomonas palustris (strain BisB18) GN=rplA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.796e-20
Identity = 49/145 (33.79%), Postives = 79/145 (54.48%), Query Frame = 1
Query:  100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            L DAIK VK  A + FDET+E  + L + PR  + +VRG + LP+G  + +R                         L+E++   G ++ ++C +T   MP + ++ K+L   G+MPNPK GTVT D+  AV+ AK G ++F+++
Sbjct:   22 LADAIKMVKERAVSKFDETIEIAINLGVDPRHADQMVRGVVTLPNGTGRTLRVGVFARGAKADEARAAGADVVGAEDLVEKV-QGGTIEFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKIGTVTMDITNAVKGAKGGSVEFRVE 165          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_FLAJ1 (50S ribosomal protein L1 OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=rplA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.796e-20
Identity = 60/159 (37.74%), Postives = 79/159 (49.69%), Query Frame = 1
Query:   58 KPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            K  + K E   +  L DA   +K  A A FDE+V+  VRL + PRK   +VRG + LPHG  K V+                          +++I   G  DV+   +    M +L  + +IL   GLMPNPK GTVT DVA+AVQE K G I FK+D
Sbjct:    9 KEAASKIEKNKLYSLKDAAALLKVVASAKFDESVDIAVRLGVDPRKANQMVRGVVTLPHGTGKDVKVLALVTPDKEAEAREAGADHVGLDDYLQKI-KDGWTDVDVIITMPAVMGKLGPLGRILGPRGLMPNPKTGTVTMDVAKAVQEVKAGKIDFKVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_CORGL (50S ribosomal protein L1 OS=Corynebacterium glutamicum GN=rplA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.796e-20
Identity = 51/156 (32.69%), Postives = 86/156 (55.13%), Query Frame = 1
Query:   67 SKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            ++K ++  +   ++A   VK  +   +D +++  +RL + PRK + +VRGT++LP+G  K VR                        +L+E+I   G  D +   +T   M ++ +I+++L   GLMPNPK GTVTNDVA+A++E K G I F++D
Sbjct:   12 AEKIDAGRIYSPLEAANLVKETSSKNYDASIDVAIRLGVDPRKADQLVRGTVSLPNGTGKTVRVAVFAQGEKATEAEAAGADFVGTDELVEKI-QGGWTDFDVAIATPDQMAKIGRIARVLGPRGLMPNPKTGTVTNDVAKAIEEVKGGKISFRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_CORGB (50S ribosomal protein L1 OS=Corynebacterium glutamicum (strain R) GN=rplA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.796e-20
Identity = 51/156 (32.69%), Postives = 86/156 (55.13%), Query Frame = 1
Query:   67 SKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            ++K ++  +   ++A   VK  +   +D +++  +RL + PRK + +VRGT++LP+G  K VR                        +L+E+I   G  D +   +T   M ++ +I+++L   GLMPNPK GTVTNDVA+A++E K G I F++D
Sbjct:   12 AEKIDAGRIYSPLEAANLVKETSSKNYDASIDVAIRLGVDPRKADQLVRGTVSLPNGTGKTVRVAVFAQGEKATEAEAAGADFVGTDELVEKI-QGGWTDFDVAIATPDQMAKIGRIARVLGPRGLMPNPKTGTVTNDVAKAIEEVKGGKISFRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_COREF (50S ribosomal protein L1 OS=Corynebacterium efficiens GN=rplA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.796e-20
Identity = 52/144 (36.11%), Postives = 79/144 (54.86%), Query Frame = 1
Query:  103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            + A + VK  +   FD +V+  +RL + PRK + +VRGT++LP+G  K VR                        +L+E I   G  D +   +T   M ++ +I+++L   GLMPNPK GTVTNDVA+A++E K G I F++D
Sbjct:   24 LQAAELVKETSSKNFDASVDVAIRLGVDPRKADQLVRGTVSLPNGTGKTVRVAVFAAGEKATEAEAAGADFVGTDELVERI-QGGWTDFDVAIATPDQMAKIGRIARVLGPRGLMPNPKTGTVTNDVAKAIEEVKGGKISFRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_RHILO (50S ribosomal protein L1 OS=Rhizobium loti GN=rplA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.569e-20
Identity = 50/145 (34.48%), Postives = 80/145 (55.17%), Query Frame = 1
Query:  100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            L +A+K +K  +   FDETVE  + L + PR  + +VRG +NLP+G  ++VR                         L++ I   G +D ++C +T   MP + ++ K+L   G+MPNPK GTVT DVA AV+ +K G ++F+++
Sbjct:   23 LGEALKLLKDRSSVKFDETVEVAMNLGVDPRHADQMVRGVVNLPNGTGRSVRVAVFARGDKAEEAKAAGADIVGAEDLVD-IVQKGTIDFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTTDVAAAVKASKGGAVEFRVE 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_NOCFA (50S ribosomal protein L1 OS=Nocardia farcinica GN=rplA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.569e-20
Identity = 57/156 (36.54%), Postives = 79/156 (50.64%), Query Frame = 1
Query:   67 SKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            ++K +   +   + A +  K  A    D TVE  VRL + PRK + +VRGT+NLPHG  K  R                         LIE I   G LD +   +T   M ++ +I+++L   GLMPNPK GTVT DVA+AV + K G I F++D
Sbjct:   12 AEKVDRTKLYSPLAAARLAKETATTKTDATVEVAVRLGVDPRKADQMVRGTVNLPHGTGKTARVIVFAAGEKAAEAEAAGADAVGAEDLIERI-QGGWLDFDAAIATPDQMAKVGRIARVLGPRGLMPNPKTGTVTTDVAKAVSDIKGGKINFRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_MYCGI (50S ribosomal protein L1 OS=Mycobacterium gilvum (strain PYR-GCK) GN=rplA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.569e-20
Identity = 58/159 (36.48%), Postives = 81/159 (50.94%), Query Frame = 1
Query:   58 KPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            K  ++K +   V   ++A K  K  +    D TVE  +RL + PRK + +VRGT+NLPHG  K  R                         LIE+I   G LD +   +T   M ++ +I++IL   GLMPNPK GTVT DV +AV + K G I F++D
Sbjct:    9 KEAAEKIDRDRVYSPLEAAKLAKETSSKKQDATVEVAIRLGVDPRKADQMVRGTVNLPHGTGKTARVAVFAVGEKAEAAVAAGADVVGSDDLIEKI-QGGFLDFDAAIATPDQMAKVGRIARILGPRGLMPNPKTGTVTPDVTKAVNDIKGGKINFRVD 166          
The following BLAST results are available for this feature:
BLAST of CX288757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_CORJK4.438e-2038.0350S ribosomal protein L1 OS=Corynebacterium jeikei... [more]
RL1_CORDI4.438e-2033.3350S ribosomal protein L1 OS=Corynebacterium diphth... [more]
RL1_RHOPB5.796e-2033.7950S ribosomal protein L1 OS=Rhodopseudomonas palus... [more]
RL1_FLAJ15.796e-2037.7450S ribosomal protein L1 OS=Flavobacterium johnson... [more]
RL1_CORGL5.796e-2032.6950S ribosomal protein L1 OS=Corynebacterium glutam... [more]
RL1_CORGB5.796e-2032.6950S ribosomal protein L1 OS=Corynebacterium glutam... [more]
RL1_COREF5.796e-2036.1150S ribosomal protein L1 OS=Corynebacterium effici... [more]
RL1_RHILO7.569e-2034.4850S ribosomal protein L1 OS=Rhizobium loti GN=rplA... [more]
RL1_NOCFA7.569e-2036.5450S ribosomal protein L1 OS=Nocardia farcinica GN=... [more]
RL1_MYCGI7.569e-2036.4850S ribosomal protein L1 OS=Mycobacterium gilvum (... [more]

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Properties
Property NameValue
Genbank descriptionC02004A12SK IF1 Citrus clementina cDNA clone C02004A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288757 ID=CX288757; Name=CX288757; organism=Citrus clementina; type=EST; length=538bp
CTGCAGGAATTCGCACGAGGGCAGGCGCAGGTGTCTGTCCCCTACCCACT
GTTGATTAAGCCGGAGAGTAAGAAGAAAGAGAGCAGACCGGTTCTTGATT
TGATGGACGCCATCAAACAAGTCAAGGCCAATGCCAAGGCTACATTTGAT
GAAACTGTTGAAGCTCATGTACGATTGGCCATTCCTCCTCGCAAAACTGA
GCTGATAGTTCGTGGTACTATGAATCTTCCGCATGGTGATAAGAAGGCCG
TCAGGGTGGCTTTCTTTGCTGAAGGGGCTGATGCGGAAGAAGCCAGAGCT
GCTGGAGCTGATGTTGTTGGTGGTTTAAAACTTATTGAGGAAATTGCAAG
CAGTGGCAAGCTTGATGTTGAGAAATGCTTCTCAACGCGTCAATTCATGC
CTCGTCTGTTCAAGATATCAAAGATTCTTAATCAACATGGTTTGATGCCA
AATCCTAAACAAGGTACAGTAACCAATGACGTTGCTAGAGCGGTACAAGA
AGCAAAACAGGGTCACATTAAATTTAAAATGGATAACA
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