CX288757

Overview
NameCX288757
Unique NameCX288757
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_GLUOX (50S ribosomal protein L1 OS=Gluconobacter oxydans GN=rplA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.569e-20
Identity = 52/145 (35.86%), Postives = 80/145 (55.17%), Query Frame = 1
Query:  100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            L +A+  VK+NAKA FDET+E  + L I PR  + +VRG ++LP+G  K +R                         L E+I  +G++D ++C +T   M  + ++ KIL   GLMPNP+ GTVT DV  A+  AK G ++++ +
Sbjct:   22 LSEAVALVKSNAKAKFDETIEISLNLGIDPRHADQMVRGLISLPNGTGKTLRVGVFARGPKAEEALAAGAEVVGAEDLAEKI-QAGEIDFDRCIATPDMMALVGRLGKILGPRGLMPNPRLGTVTMDVKGAITAAKSGQVEYRAE 165          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_CAMC5 (50S ribosomal protein L1 OS=Campylobacter curvus (strain 525.92) GN=rplA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.569e-20
Identity = 57/155 (36.77%), Postives = 82/155 (52.90%), Query Frame = 1
Query:   70 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            KK E   + +L +AI  +K  A A FDETVE  ++L + PR  + +VRG++ LP G  K VR                        +L+E+I   G ++ +   +T   M  + K+ +IL   GLMPNPK GTVT DVA+AV  AK G + F++D
Sbjct:   13 KKVEENKIYNLDEAITTIKTLASAKFDETVEIALKLNVDPRHADQMVRGSVVLPAGTGKTVRVAVIAKDAKADEAKAAGADIVGSDELVEDI-QKGIMNFDVLIATPNLMGLVGKVGRILGPKGLMPNPKTGTVTMDVAQAVNNAKSGQVNFRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_ACIC1 (50S ribosomal protein L1 OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=rplA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.569e-20
Identity = 54/144 (37.50%), Postives = 79/144 (54.86%), Query Frame = 1
Query:  103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            ++A++  K         TVE  +RL + PRK + +VRGT+NLPHG  K  R                        +LIE++A+ G LD +   +T   M ++ ++ +IL   GLMPNPK GTVTNDVA+AV + K G I+F++D
Sbjct:   23 LEAMRLAKQTNTMRVPATVEVAMRLGVDPRKADQMVRGTVNLPHGTGKTPRVLVFATAERAEEARAAGADYVGADELIEQVAN-GFLDFDAVVATPDLMGKVGRLGRILGPRGLMPNPKTGTVTNDVAKAVADIKSGKIEFRVD 165          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_RHOP2 (50S ribosomal protein L1 OS=Rhodopseudomonas palustris (strain HaA2) GN=rplA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 9.886e-20
Identity = 50/145 (34.48%), Postives = 81/145 (55.86%), Query Frame = 1
Query:  100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            L +A+K VK  A + FDET+E  + L + PR  + +VRG + LP+G  + VR                         L+E++  +G ++ ++C +T   MP + ++ K+L   G+MPNPK GTVT DVA AV+ AK G ++F+++
Sbjct:   22 LDEAVKMVKERAVSKFDETIEVALNLGVDPRHADQMVRGVVMLPNGTGRTVRVGVFARGAKADEAKAAGADVVGAEDLVEQV-QAGNINFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKIGTVTMDVAGAVKGAKGGSVEFRVE 165          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_MYCA9 (50S ribosomal protein L1 OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=rplA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 9.886e-20
Identity = 55/156 (35.26%), Postives = 81/156 (51.92%), Query Frame = 1
Query:   67 SKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            ++K +   +   ++A K  K  +   +D TVE  +RL + PRK + +VRGT+NLPHG  K  R                         LIE I   G +D +   +T   M ++ +I+++L   GLMPNPK GTVT DVA+AV + K G I F++D
Sbjct:   12 AEKVDREKLYTPLEATKLAKETSSKKYDATVEVAMRLGVDPRKADQMVRGTVNLPHGTGKTARVIVFAVGDKAEAAAAAGADVVGSDDLIERI-QGGWVDFDAAIATPDQMAKVGRIARVLGPRGLMPNPKTGTVTPDVAKAVTDIKGGKINFRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_HELMI (50S ribosomal protein L1 OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=rplA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 9.886e-20
Identity = 57/157 (36.31%), Postives = 83/157 (52.87%), Query Frame = 1
Query:   64 ESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            ++K  +   VL+  +A+  VK  A A FDETVE   RL + PR  + ++RG + LPHG  K+ +                         L+E+I   G LD +   +T   M  + K+ ++L   GLMPNPK GTVT DVARA+QE K G I++++D
Sbjct:   11 QAKLVDRDQVLEAREAMDMVKKLATAKFDETVEVAFRLGVDPRHADQMIRGAVVLPHGTGKSRKVAVFAKGDKAKEAEAAGADAVGAEDLVEKI-QGGWLDFDVAVATPDVMGLVGKLGRLLGPKGLMPNPKTGTVTFDVARAIQEIKAGKIEYRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_CLOTH (50S ribosomal protein L1 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=rplA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 9.886e-20
Identity = 53/155 (34.19%), Postives = 82/155 (52.90%), Query Frame = 1
Query:   70 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            K  +   + D ++A++ V+  AKA FDETVEAH+RL +  R  +  VRG + LPHG  K VR                        +L+ +I +    + +   +T   M  + ++ K+L   GLMPNPK GTVT DVA+A+ + K G I++++D
Sbjct:   12 KLVDKTKLYDPVEAMELVQKTAKAKFDETVEAHIRLGVDSRHADQQVRGAVVLPHGTGKKVRVLVFAKGEKATEAEKAGADYVGAEELVSKIQNENWFEFDVVVATPDMMGVVGRLGKVLGPKGLMPNPKAGTVTMDVAKAIADIKAGKIEYRLD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_CAUCR (50S ribosomal protein L1 OS=Caulobacter crescentus GN=rplA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 9.886e-20
Identity = 56/142 (39.44%), Postives = 79/142 (55.63%), Query Frame = 1
Query:  109 AIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            AI  VKANAKA FDET+E  V L + PR  +  VRG +NLP G  + VR                         L E+IA  G +D ++  +T   M  + ++ K+L   GLMPNPK GTVT +VA+AV++AK G ++F+++
Sbjct:   24 AIALVKANAKAKFDETIEISVNLGVDPRHADQQVRGVVNLPSGTGRDVRVAVFAKDAKAAEATAAGAEHVGADDLYEKIAG-GFMDFDRVIATPDMMALVGRLGKVLGPRGLMPNPKVGTVTPNVAQAVKDAKGGAVEFRVE 164          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_CAUCN (50S ribosomal protein L1 OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=rplA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 9.886e-20
Identity = 56/142 (39.44%), Postives = 79/142 (55.63%), Query Frame = 1
Query:  109 AIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            AI  VKANAKA FDET+E  V L + PR  +  VRG +NLP G  + VR                         L E+IA  G +D ++  +T   M  + ++ K+L   GLMPNPK GTVT +VA+AV++AK G ++F+++
Sbjct:   24 AIALVKANAKAKFDETIEISVNLGVDPRHADQQVRGVVNLPSGTGRDVRVAVFAKDAKAAEATAAGAEHVGADDLYEKIAG-GFMDFDRVIATPDMMALVGRLGKVLGPRGLMPNPKVGTVTPNVAQAVKDAKGGAVEFRVE 164          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_CAMJR (50S ribosomal protein L1 OS=Campylobacter jejuni (strain RM1221) GN=rplA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 9.886e-20
Identity = 59/160 (36.88%), Postives = 82/160 (51.25%), Query Frame = 1
Query:   55 IKPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +K  S+K +S     L DAI  +K    A FDETVE  ++L + PR  + +VRG++ LP G  K VR                         L+EEI   G ++ +   +T   M  + K+ +IL   GLMPNPK GTVT DVA+AV  AK G + F++D
Sbjct:    8 LKELSQKIDSNKEYALSDAIDTIKTLKSAKFDETVEIALKLNVDPRHADQMVRGSVVLPAGTGKKVRVAVIAKDAKADEAKNAGADIVGSDDLVEEI-QKGNMNFDVLIATPNLMGLVGKVGRILGPKGLMPNPKTGTVTMDVAQAVNNAKSGQVNFRVD 166          
The following BLAST results are available for this feature:
BLAST of CX288757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_GLUOX7.569e-2035.8650S ribosomal protein L1 OS=Gluconobacter oxydans ... [more]
RL1_CAMC57.569e-2036.7750S ribosomal protein L1 OS=Campylobacter curvus (... [more]
RL1_ACIC17.569e-2037.5050S ribosomal protein L1 OS=Acidothermus celluloly... [more]
RL1_RHOP29.886e-2034.4850S ribosomal protein L1 OS=Rhodopseudomonas palus... [more]
RL1_MYCA99.886e-2035.2650S ribosomal protein L1 OS=Mycobacterium abscessu... [more]
RL1_HELMI9.886e-2036.3150S ribosomal protein L1 OS=Heliobacterium modesti... [more]
RL1_CLOTH9.886e-2034.1950S ribosomal protein L1 OS=Clostridium thermocell... [more]
RL1_CAUCR9.886e-2039.4450S ribosomal protein L1 OS=Caulobacter crescentus... [more]
RL1_CAUCN9.886e-2039.4450S ribosomal protein L1 OS=Caulobacter crescentus... [more]
RL1_CAMJR9.886e-2036.8850S ribosomal protein L1 OS=Campylobacter jejuni (... [more]

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Properties
Property NameValue
Genbank descriptionC02004A12SK IF1 Citrus clementina cDNA clone C02004A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288757 ID=CX288757; Name=CX288757; organism=Citrus clementina; type=EST; length=538bp
CTGCAGGAATTCGCACGAGGGCAGGCGCAGGTGTCTGTCCCCTACCCACT
GTTGATTAAGCCGGAGAGTAAGAAGAAAGAGAGCAGACCGGTTCTTGATT
TGATGGACGCCATCAAACAAGTCAAGGCCAATGCCAAGGCTACATTTGAT
GAAACTGTTGAAGCTCATGTACGATTGGCCATTCCTCCTCGCAAAACTGA
GCTGATAGTTCGTGGTACTATGAATCTTCCGCATGGTGATAAGAAGGCCG
TCAGGGTGGCTTTCTTTGCTGAAGGGGCTGATGCGGAAGAAGCCAGAGCT
GCTGGAGCTGATGTTGTTGGTGGTTTAAAACTTATTGAGGAAATTGCAAG
CAGTGGCAAGCTTGATGTTGAGAAATGCTTCTCAACGCGTCAATTCATGC
CTCGTCTGTTCAAGATATCAAAGATTCTTAATCAACATGGTTTGATGCCA
AATCCTAAACAAGGTACAGTAACCAATGACGTTGCTAGAGCGGTACAAGA
AGCAAAACAGGGTCACATTAAATTTAAAATGGATAACA
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