CX288757

Overview
NameCX288757
Unique NameCX288757
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_CAMJJ (50S ribosomal protein L1 OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=rplA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 9.886e-20
Identity = 59/160 (36.88%), Postives = 82/160 (51.25%), Query Frame = 1
Query:   55 IKPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +K  S+K +S     L DAI  +K    A FDETVE  ++L + PR  + +VRG++ LP G  K VR                         L+EEI   G ++ +   +T   M  + K+ +IL   GLMPNPK GTVT DVA+AV  AK G + F++D
Sbjct:    8 LKELSQKIDSNKEYALSDAIDTIKTLKSAKFDETVEIALKLNVDPRHADQMVRGSVVLPAGTGKKVRVAVIAKDAKADEAKNAGADIVGSDDLVEEI-QKGNMNFDVLIATPNLMGLVGKVGRILGPKGLMPNPKTGTVTMDVAQAVNNAKSGQVNFRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_CAMJE (50S ribosomal protein L1 OS=Campylobacter jejuni GN=rplA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 9.886e-20
Identity = 59/160 (36.88%), Postives = 82/160 (51.25%), Query Frame = 1
Query:   55 IKPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +K  S+K +S     L DAI  +K    A FDETVE  ++L + PR  + +VRG++ LP G  K VR                         L+EEI   G ++ +   +T   M  + K+ +IL   GLMPNPK GTVT DVA+AV  AK G + F++D
Sbjct:    8 LKELSQKIDSNKEYALSDAIDTIKTLKSAKFDETVEIALKLNVDPRHADQMVRGSVVLPAGTGKKVRVAVIAKDAKADEAKNAGADIVGSDDLVEEI-QKGNMNFDVLIATPNLMGLVGKVGRILGPKGLMPNPKTGTVTMDVAQAVNNAKSGQVNFRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_CAMJD (50S ribosomal protein L1 OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=rplA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 9.886e-20
Identity = 59/160 (36.88%), Postives = 82/160 (51.25%), Query Frame = 1
Query:   55 IKPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +K  S+K +S     L DAI  +K    A FDETVE  ++L + PR  + +VRG++ LP G  K VR                         L+EEI   G ++ +   +T   M  + K+ +IL   GLMPNPK GTVT DVA+AV  AK G + F++D
Sbjct:    8 LKELSQKIDSNKEYALSDAIDTIKTLKSAKFDETVEIALKLNVDPRHADQMVRGSVVLPAGTGKKVRVAVIAKDAKADEAKNAGADIVGSDDLVEEI-QKGNMNFDVLIATPNLMGLVGKVGRILGPKGLMPNPKTGTVTMDVAQAVNNAKSGQVNFRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_CAMJ8 (50S ribosomal protein L1 OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=rplA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 9.886e-20
Identity = 59/160 (36.88%), Postives = 82/160 (51.25%), Query Frame = 1
Query:   55 IKPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +K  S+K +S     L DAI  +K    A FDETVE  ++L + PR  + +VRG++ LP G  K VR                         L+EEI   G ++ +   +T   M  + K+ +IL   GLMPNPK GTVT DVA+AV  AK G + F++D
Sbjct:    8 LKELSQKIDSNKEYALSDAIDTIKTLKSAKFDETVEIALKLNVDPRHADQMVRGSVVLPAGTGKKVRVAVIAKDAKADEAKNAGADIVGSDDLVEEI-QKGNMNFDVLIATPNLMGLVGKVGRILGPKGLMPNPKTGTVTMDVAQAVNNAKSGQVNFRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BARHE (50S ribosomal protein L1 OS=Bartonella henselae GN=rplA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 9.886e-20
Identity = 53/145 (36.55%), Postives = 78/145 (53.79%), Query Frame = 1
Query:  100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            L DA+  VK  A A FDET+E  + L + PR  + +VRG ++LP+G  + VR                         L E I + G +D ++C +T   MP + ++ KIL    LMPNPK GTVT DVA AV+ +K G ++F+++
Sbjct:   23 LKDAVSMVKERAIAKFDETIEISMNLGVDPRHADQMVRGVVHLPNGTGRNVRVAVFARGDKAEEAKTAGADIVGAEDLFESI-NGGAIDFDRCIATPDMMPLVGRLGKILGPRNLMPNPKVGTVTLDVANAVKASKGGAVEFRVE 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_THEEB (50S ribosomal protein L1 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.291e-19
Identity = 55/154 (35.71%), Postives = 84/154 (54.55%), Query Frame = 1
Query:   73 KKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            K E RP   L +A++ +K  A A F E+ EAH+RL I P+ T+  +R T+ LP G  + +R                        +LI+EI   G++D +   +T   MP++ K+ +IL   GLMP+PK GTVT D+ +A+QE K G ++F+ D
Sbjct:   14 KVEDRPYAPL-EALQLLKETATAKFPESAEAHIRLGIDPKYTDQQLRTTVALPKGTGQTIRVAVIARGEKVTEASAAGADVVGSEELIDEI-QKGRMDFDLLIATPDMMPQVAKVGRILGPRGLMPSPKAGTVTFDLPQAIQEFKAGKVEFRAD 165          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_THEAB (50S ribosomal protein L1 OS=Thermosipho africanus (strain TCF52B) GN=rplA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.291e-19
Identity = 57/146 (39.04%), Postives = 75/146 (51.37%), Query Frame = 1
Query:   97 DLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            DL +AI   K  A A FDETVE H++  I  RK++  +R T+ LPHG  K V+                         L E+I     LD +   +T   M  + K+ KIL   GLMPNPK GTVTNDVA AV+E K+G ++ + D
Sbjct:   22 DLNEAIDLAKKVATAKFDETVELHIKTNIDYRKSDQQIRSTIALPHGTGKEVKVLVFATGEKAEEAKAAGADYVGAEDLAEKIQKENFLDFDVAIATPDMMRVIGKLGKILGPRGLMPNPKAGTVTNDVASAVKEFKKGRMEVRTD 167          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_SACEN (50S ribosomal protein L1 OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=rplA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.291e-19
Identity = 55/144 (38.19%), Postives = 75/144 (52.08%), Query Frame = 1
Query:  103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            ++A +  K  AK   D TVE  +RL + PRK + +VRGT+NLPHG  K  R                         LIE I   G LD +   +T   M ++ KI+++L   GLMPNPK GTVT +V +AV + K G I F++D
Sbjct:   24 LEAAELAKKTAKVKMDPTVEVAMRLGVDPRKADQMVRGTVNLPHGTGKTARVIVFAVGDKAAEAEAAGADAVGSEDLIERI-QGGWLDFDAAIATPDQMAKVGKIARVLGPRGLMPNPKTGTVTPNVTKAVADIKGGKINFRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_RICPR (50S ribosomal protein L1 OS=Rickettsia prowazekii GN=rplA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.291e-19
Identity = 50/160 (31.25%), Postives = 88/160 (55.00%), Query Frame = 1
Query:   55 IKPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            I+   +K +S  + +L +A+ Q+K+ +   FD T+E  ++L I PR ++ IVRG +NLP G  K +R                       + +I+EI  +G+++ + C +T   M  +  +++IL   GLMPNPK GTVT D+  A++ AK G ++++ +
Sbjct:   16 IREAREKVKSDTLYNLTNAVAQLKSASYVKFDPTLEIVMKLGIDPRHSDQIVRGVVNLPAGTGKTIRVAVICKEEREEEAKSAGADLVGSINIIDEI-KAGQINFDVCIATPDMMSMISSVARILGPKGLMPNPKLGTVTLDIKNAIKNAKSGQVEYRAE 174          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_RHOSR (50S ribosomal protein L1 OS=Rhodococcus sp. (strain RHA1) GN=rplA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.291e-19
Identity = 55/144 (38.19%), Postives = 74/144 (51.39%), Query Frame = 1
Query:  103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            + A K  K  + +  D TVE  VRL + PRK + +VRGT+NLPHG  K  R                         LIE I   G LD +   +T   M ++ +I+++L   GLMPNPK GTVT DV +AV + K G I F++D
Sbjct:   24 LQAAKLAKETSSSKMDATVEVAVRLGVDPRKADQMVRGTVNLPHGTGKTARVIVFAVGEKAAEAEAAGADAVGAEDLIERI-QGGWLDFDAAIATPDQMAKVGRIARVLGPRGLMPNPKTGTVTADVTKAVADIKGGKINFRVD 166          
The following BLAST results are available for this feature:
BLAST of CX288757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_CAMJJ9.886e-2036.8850S ribosomal protein L1 OS=Campylobacter jejuni s... [more]
RL1_CAMJE9.886e-2036.8850S ribosomal protein L1 OS=Campylobacter jejuni G... [more]
RL1_CAMJD9.886e-2036.8850S ribosomal protein L1 OS=Campylobacter jejuni s... [more]
RL1_CAMJ89.886e-2036.8850S ribosomal protein L1 OS=Campylobacter jejuni s... [more]
RL1_BARHE9.886e-2036.5550S ribosomal protein L1 OS=Bartonella henselae GN... [more]
RL1_THEEB1.291e-1935.7150S ribosomal protein L1 OS=Thermosynechococcus el... [more]
RL1_THEAB1.291e-1939.0450S ribosomal protein L1 OS=Thermosipho africanus ... [more]
RL1_SACEN1.291e-1938.1950S ribosomal protein L1 OS=Saccharopolyspora eryt... [more]
RL1_RICPR1.291e-1931.2550S ribosomal protein L1 OS=Rickettsia prowazekii ... [more]
RL1_RHOSR1.291e-1938.1950S ribosomal protein L1 OS=Rhodococcus sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionC02004A12SK IF1 Citrus clementina cDNA clone C02004A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288757 ID=CX288757; Name=CX288757; organism=Citrus clementina; type=EST; length=538bp
CTGCAGGAATTCGCACGAGGGCAGGCGCAGGTGTCTGTCCCCTACCCACT
GTTGATTAAGCCGGAGAGTAAGAAGAAAGAGAGCAGACCGGTTCTTGATT
TGATGGACGCCATCAAACAAGTCAAGGCCAATGCCAAGGCTACATTTGAT
GAAACTGTTGAAGCTCATGTACGATTGGCCATTCCTCCTCGCAAAACTGA
GCTGATAGTTCGTGGTACTATGAATCTTCCGCATGGTGATAAGAAGGCCG
TCAGGGTGGCTTTCTTTGCTGAAGGGGCTGATGCGGAAGAAGCCAGAGCT
GCTGGAGCTGATGTTGTTGGTGGTTTAAAACTTATTGAGGAAATTGCAAG
CAGTGGCAAGCTTGATGTTGAGAAATGCTTCTCAACGCGTCAATTCATGC
CTCGTCTGTTCAAGATATCAAAGATTCTTAATCAACATGGTTTGATGCCA
AATCCTAAACAAGGTACAGTAACCAATGACGTTGCTAGAGCGGTACAAGA
AGCAAAACAGGGTCACATTAAATTTAAAATGGATAACA
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