CX288757

Overview
NameCX288757
Unique NameCX288757
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_FUSNN (50S ribosomal protein L1 OS=Fusobacterium nucleatum subsp. nucleatum GN=rplA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.686e-19
Identity = 55/156 (35.26%), Postives = 81/156 (51.92%), Query Frame = 1
Query:   67 SKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +K  E   + D+ +A++ V+    A F ETVE  +RL + PR  +  +RGT+ LPHG  K V+                        + I +I   G LD +   +T   MP++ ++ KIL   GLMPNPK GTVT D+A AV E K+G + F++D
Sbjct:   13 AKLVEIGKLYDIREALELVQKTKTAKFTETVEVALRLGVDPRHADQQIRGTVVLPHGTGKTVKILAITSGENIEKALAAGADYAGAEEYINQI-QQGWLDFDLVIATPDMMPKIGRLGKILGTKGLMPNPKSGTVTPDIAAAVSEFKKGKLAFRVD 167          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_CORU7 (50S ribosomal protein L1 OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=rplA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.686e-19
Identity = 52/144 (36.11%), Postives = 77/144 (53.47%), Query Frame = 1
Query:  103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            + A K  KA +   +D T++  +RL + PRK + +VRGT+ LP+G  K VR                        +LIE+I   G  D +   +T   M ++ +++++L   GLMPNPK GTVT DVA+AV E K G I F++D
Sbjct:   24 LQAAKLAKATSSKNYDATIDVAIRLGVDPRKADQLVRGTVALPNGTGKDVRVVVFAEGPNATAAEEAGADFVGSAELIEKI-QGGWTDFDAAIATPDQMAKVGRVARVLGPRGLMPNPKTGTVTTDVAKAVSEIKGGKISFRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_CLAMS (50S ribosomal protein L1 OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=rplA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.686e-19
Identity = 52/143 (36.36%), Postives = 77/143 (53.85%), Query Frame = 1
Query:  106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +A++  +    + FD TVE  ++L + PRK + +VRGT+ LPHG  K  R                        +LIE++A  G    +   ST + M ++ ++ K+L   GLMPNPK GTVT DVARAV + K G I+F++D
Sbjct:   24 EAVELARETGSSKFDSTVEVALKLGVDPRKADQMVRGTVILPHGTGKTARVIVFATGPAAEAAIAAGADEVGGDELIEKVAG-GYTSFDSAVSTPELMGKVGRLGKVLGPRGLMPNPKTGTVTPDVARAVSDIKGGKIEFRVD 165          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_CLAM3 (50S ribosomal protein L1 OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=rplA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.686e-19
Identity = 52/143 (36.36%), Postives = 77/143 (53.85%), Query Frame = 1
Query:  106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +A++  +    + FD TVE  ++L + PRK + +VRGT+ LPHG  K  R                        +LIE++A  G    +   ST + M ++ ++ K+L   GLMPNPK GTVT DVARAV + K G I+F++D
Sbjct:   24 EAVELARETGSSKFDSTVEVALKLGVDPRKADQMVRGTVILPHGTGKTARVIVFATGPAAEAAIAAGADEVGGDELIEKVAG-GYTSFDSAVSTPELMGKVGRLGKVLGPRGLMPNPKTGTVTPDVARAVSDIKGGKIEFRVD 165          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_CHLTE (50S ribosomal protein L1 OS=Chlorobium tepidum GN=rplA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.686e-19
Identity = 55/146 (37.67%), Postives = 80/146 (54.79%), Query Frame = 1
Query:   97 DLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +L +AI++VK      FD TV+  ++L + PR  + +VRGT+ LP+G  K V                           IE+I  +G  DV+   +T   M +L K+++IL   GLMPNPK GTVT DVA+AV+E K G I+F++D
Sbjct:   22 ELAEAIEKVKEITTTKFDATVDVAIKLGVDPRHADQVVRGTVMLPYGTGKTVSVLVVCKENKAEEAREAGADFVGFEDYIEKI-QNGWTDVDVIVATPDVMGQLGKVARILGPRGLMPNPKSGTVTMDVAKAVKEVKAGKIEFRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_WOLPM (50S ribosomal protein L1 OS=Wolbachia pipientis wMel GN=rplA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.202e-19
Identity = 52/141 (36.88%), Postives = 77/141 (54.61%), Query Frame = 1
Query:  112 IKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +K++  +A A F+E+V+  V L +  RK+E  VRGT+ LP G  K ++                         L+EEI    KLDV+ C +T  FM ++  I+K+L   GLMPNPK GTVT+++A A++  K G +KF  D
Sbjct:   12 LKKIVESASAKFNESVDIAVNLGVDSRKSEEQVRGTVVLPKGIGKNIKVAVFAQDKHLLEAEKAGADIAGGEDLVEEIKKGRKLDVDWCITTPDFMAKITPIAKVLGVKGLMPNPKFGTVTSNIAEAIKTIKSGQVKFGTD 152          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_RHOPS (50S ribosomal protein L1 OS=Rhodopseudomonas palustris (strain BisB5) GN=rplA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.202e-19
Identity = 49/145 (33.79%), Postives = 80/145 (55.17%), Query Frame = 1
Query:  100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            L +A+K VK  A + FDET+E  + L + PR  + +VRG + LP+G  + +R                         L+E++   G ++ ++C +T   MP + ++ K+L   G+MPNPK GTVT DVA AV+ AK G ++F+++
Sbjct:   22 LDEAVKMVKERATSKFDETIEVALNLGVDPRHADQMVRGVVMLPNGTGRTLRVGVFARGAKADEAKAAGADVVGAEDLVEQV-QGGNINFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKIGTVTMDVAGAVKGAKGGSVEFRVE 165          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_RHOE4 (50S ribosomal protein L1 OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=rplA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.202e-19
Identity = 55/156 (35.26%), Postives = 79/156 (50.64%), Query Frame = 1
Query:   67 SKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            ++K ++  +   + A K  K  +    D TVE  VRL + PRK + +VRGT+NLPHG  K  R                         LIE I   G +D +   +T   M ++ +I+++L   GLMPNPK GTVT DV +AV + K G I F++D
Sbjct:   12 AEKIDADKLYSPLQAAKLAKETSSTKMDATVEVAVRLGVDPRKADQMVRGTVNLPHGTGKTARVIVFAVGEKAAEAEAAGADVVGAEDLIERI-QGGWVDFDAAIATPDQMAKVGRIARVLGPRGLMPNPKTGTVTADVTKAVNDIKGGKINFRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_MYCUA (50S ribosomal protein L1 OS=Mycobacterium ulcerans (strain Agy99) GN=rplA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.202e-19
Identity = 55/144 (38.19%), Postives = 75/144 (52.08%), Query Frame = 1
Query:  103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            + A K  K  +    D TVE  +RL + PRK + +VRGT+NLPHG  K  R                         LIE+I   G LD +   +T   M ++ +I+++L   GLMPNPK GTVT DVA+AV + K G I F++D
Sbjct:   24 LQAAKLAKETSSTKQDATVEVAIRLGVDPRKADQMVRGTVNLPHGTGKTARVAVFAVGEKADAAVAAGADIVGSDDLIEKI-QGGFLDFDAVIATPDQMAKVGRIARVLGPRGLMPNPKTGTVTPDVAKAVADIKGGKINFRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_CLOB8 (50S ribosomal protein L1 OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=rplA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.202e-19
Identity = 51/144 (35.42%), Postives = 77/144 (53.47%), Query Frame = 1
Query:  103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            ++A+      AKA FDET+E HVRL + PR  +  VRG + LP+G  K VR                        +L+++I S    D +   +T   M  + +I ++L   GLMPNPK GTVT DVA+A++E K G +++++D
Sbjct:   21 VEALDLTLKTAKANFDETIELHVRLGVDPRHADQQVRGAVVLPNGTGKTVRVLVFAKGDKAAEAQQAGADFVGADELVQKIQSENWFDYDVVVATPDMMGIVGRIGRVLGPKGLMPNPKSGTVTFDVAKAIEEIKAGKVEYRVD 164          
The following BLAST results are available for this feature:
BLAST of CX288757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_FUSNN1.686e-1935.2650S ribosomal protein L1 OS=Fusobacterium nucleatu... [more]
RL1_CORU71.686e-1936.1150S ribosomal protein L1 OS=Corynebacterium urealy... [more]
RL1_CLAMS1.686e-1936.3650S ribosomal protein L1 OS=Clavibacter michiganen... [more]
RL1_CLAM31.686e-1936.3650S ribosomal protein L1 OS=Clavibacter michiganen... [more]
RL1_CHLTE1.686e-1937.6750S ribosomal protein L1 OS=Chlorobium tepidum GN=... [more]
RL1_WOLPM2.202e-1936.8850S ribosomal protein L1 OS=Wolbachia pipientis wM... [more]
RL1_RHOPS2.202e-1933.7950S ribosomal protein L1 OS=Rhodopseudomonas palus... [more]
RL1_RHOE42.202e-1935.2650S ribosomal protein L1 OS=Rhodococcus erythropol... [more]
RL1_MYCUA2.202e-1938.1950S ribosomal protein L1 OS=Mycobacterium ulcerans... [more]
RL1_CLOB82.202e-1935.4250S ribosomal protein L1 OS=Clostridium beijerinck... [more]

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Properties
Property NameValue
Genbank descriptionC02004A12SK IF1 Citrus clementina cDNA clone C02004A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288757 ID=CX288757; Name=CX288757; organism=Citrus clementina; type=EST; length=538bp
CTGCAGGAATTCGCACGAGGGCAGGCGCAGGTGTCTGTCCCCTACCCACT
GTTGATTAAGCCGGAGAGTAAGAAGAAAGAGAGCAGACCGGTTCTTGATT
TGATGGACGCCATCAAACAAGTCAAGGCCAATGCCAAGGCTACATTTGAT
GAAACTGTTGAAGCTCATGTACGATTGGCCATTCCTCCTCGCAAAACTGA
GCTGATAGTTCGTGGTACTATGAATCTTCCGCATGGTGATAAGAAGGCCG
TCAGGGTGGCTTTCTTTGCTGAAGGGGCTGATGCGGAAGAAGCCAGAGCT
GCTGGAGCTGATGTTGTTGGTGGTTTAAAACTTATTGAGGAAATTGCAAG
CAGTGGCAAGCTTGATGTTGAGAAATGCTTCTCAACGCGTCAATTCATGC
CTCGTCTGTTCAAGATATCAAAGATTCTTAATCAACATGGTTTGATGCCA
AATCCTAAACAAGGTACAGTAACCAATGACGTTGCTAGAGCGGTACAAGA
AGCAAAACAGGGTCACATTAAATTTAAAATGGATAACA
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