CX288757
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_FUSNN (50S ribosomal protein L1 OS=Fusobacterium nucleatum subsp. nucleatum GN=rplA PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.686e-19 Identity = 55/156 (35.26%), Postives = 81/156 (51.92%), Query Frame = 1 Query: 67 SKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 +K E + D+ +A++ V+ A F ETVE +RL + PR + +RGT+ LPHG K V+ + I +I G LD + +T MP++ ++ KIL GLMPNPK GTVT D+A AV E K+G + F++D Sbjct: 13 AKLVEIGKLYDIREALELVQKTKTAKFTETVEVALRLGVDPRHADQQIRGTVVLPHGTGKTVKILAITSGENIEKALAAGADYAGAEEYINQI-QQGWLDFDLVIATPDMMPKIGRLGKILGTKGLMPNPKSGTVTPDIAAAVSEFKKGKLAFRVD 167
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_CORU7 (50S ribosomal protein L1 OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=rplA PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.686e-19 Identity = 52/144 (36.11%), Postives = 77/144 (53.47%), Query Frame = 1 Query: 103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 + A K KA + +D T++ +RL + PRK + +VRGT+ LP+G K VR +LIE+I G D + +T M ++ +++++L GLMPNPK GTVT DVA+AV E K G I F++D Sbjct: 24 LQAAKLAKATSSKNYDATIDVAIRLGVDPRKADQLVRGTVALPNGTGKDVRVVVFAEGPNATAAEEAGADFVGSAELIEKI-QGGWTDFDAAIATPDQMAKVGRVARVLGPRGLMPNPKTGTVTTDVAKAVSEIKGGKISFRVD 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_CLAMS (50S ribosomal protein L1 OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=rplA PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.686e-19 Identity = 52/143 (36.36%), Postives = 77/143 (53.85%), Query Frame = 1 Query: 106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 +A++ + + FD TVE ++L + PRK + +VRGT+ LPHG K R +LIE++A G + ST + M ++ ++ K+L GLMPNPK GTVT DVARAV + K G I+F++D Sbjct: 24 EAVELARETGSSKFDSTVEVALKLGVDPRKADQMVRGTVILPHGTGKTARVIVFATGPAAEAAIAAGADEVGGDELIEKVAG-GYTSFDSAVSTPELMGKVGRLGKVLGPRGLMPNPKTGTVTPDVARAVSDIKGGKIEFRVD 165
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_CLAM3 (50S ribosomal protein L1 OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=rplA PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.686e-19 Identity = 52/143 (36.36%), Postives = 77/143 (53.85%), Query Frame = 1 Query: 106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 +A++ + + FD TVE ++L + PRK + +VRGT+ LPHG K R +LIE++A G + ST + M ++ ++ K+L GLMPNPK GTVT DVARAV + K G I+F++D Sbjct: 24 EAVELARETGSSKFDSTVEVALKLGVDPRKADQMVRGTVILPHGTGKTARVIVFATGPAAEAAIAAGADEVGGDELIEKVAG-GYTSFDSAVSTPELMGKVGRLGKVLGPRGLMPNPKTGTVTPDVARAVSDIKGGKIEFRVD 165
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_CHLTE (50S ribosomal protein L1 OS=Chlorobium tepidum GN=rplA PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.686e-19 Identity = 55/146 (37.67%), Postives = 80/146 (54.79%), Query Frame = 1 Query: 97 DLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 +L +AI++VK FD TV+ ++L + PR + +VRGT+ LP+G K V IE+I +G DV+ +T M +L K+++IL GLMPNPK GTVT DVA+AV+E K G I+F++D Sbjct: 22 ELAEAIEKVKEITTTKFDATVDVAIKLGVDPRHADQVVRGTVMLPYGTGKTVSVLVVCKENKAEEAREAGADFVGFEDYIEKI-QNGWTDVDVIVATPDVMGQLGKVARILGPRGLMPNPKSGTVTMDVAKAVKEVKAGKIEFRVD 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_WOLPM (50S ribosomal protein L1 OS=Wolbachia pipientis wMel GN=rplA PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.202e-19 Identity = 52/141 (36.88%), Postives = 77/141 (54.61%), Query Frame = 1 Query: 112 IKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 +K++ +A A F+E+V+ V L + RK+E VRGT+ LP G K ++ L+EEI KLDV+ C +T FM ++ I+K+L GLMPNPK GTVT+++A A++ K G +KF D Sbjct: 12 LKKIVESASAKFNESVDIAVNLGVDSRKSEEQVRGTVVLPKGIGKNIKVAVFAQDKHLLEAEKAGADIAGGEDLVEEIKKGRKLDVDWCITTPDFMAKITPIAKVLGVKGLMPNPKFGTVTSNIAEAIKTIKSGQVKFGTD 152
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_RHOPS (50S ribosomal protein L1 OS=Rhodopseudomonas palustris (strain BisB5) GN=rplA PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.202e-19 Identity = 49/145 (33.79%), Postives = 80/145 (55.17%), Query Frame = 1 Query: 100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 L +A+K VK A + FDET+E + L + PR + +VRG + LP+G + +R L+E++ G ++ ++C +T MP + ++ K+L G+MPNPK GTVT DVA AV+ AK G ++F+++ Sbjct: 22 LDEAVKMVKERATSKFDETIEVALNLGVDPRHADQMVRGVVMLPNGTGRTLRVGVFARGAKADEAKAAGADVVGAEDLVEQV-QGGNINFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKIGTVTMDVAGAVKGAKGGSVEFRVE 165
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_RHOE4 (50S ribosomal protein L1 OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=rplA PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.202e-19 Identity = 55/156 (35.26%), Postives = 79/156 (50.64%), Query Frame = 1 Query: 67 SKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 ++K ++ + + A K K + D TVE VRL + PRK + +VRGT+NLPHG K R LIE I G +D + +T M ++ +I+++L GLMPNPK GTVT DV +AV + K G I F++D Sbjct: 12 AEKIDADKLYSPLQAAKLAKETSSTKMDATVEVAVRLGVDPRKADQMVRGTVNLPHGTGKTARVIVFAVGEKAAEAEAAGADVVGAEDLIERI-QGGWVDFDAAIATPDQMAKVGRIARVLGPRGLMPNPKTGTVTADVTKAVNDIKGGKINFRVD 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_MYCUA (50S ribosomal protein L1 OS=Mycobacterium ulcerans (strain Agy99) GN=rplA PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.202e-19 Identity = 55/144 (38.19%), Postives = 75/144 (52.08%), Query Frame = 1 Query: 103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 + A K K + D TVE +RL + PRK + +VRGT+NLPHG K R LIE+I G LD + +T M ++ +I+++L GLMPNPK GTVT DVA+AV + K G I F++D Sbjct: 24 LQAAKLAKETSSTKQDATVEVAIRLGVDPRKADQMVRGTVNLPHGTGKTARVAVFAVGEKADAAVAAGADIVGSDDLIEKI-QGGFLDFDAVIATPDQMAKVGRIARVLGPRGLMPNPKTGTVTPDVAKAVADIKGGKINFRVD 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_CLOB8 (50S ribosomal protein L1 OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=rplA PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.202e-19 Identity = 51/144 (35.42%), Postives = 77/144 (53.47%), Query Frame = 1 Query: 103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 ++A+ AKA FDET+E HVRL + PR + VRG + LP+G K VR +L+++I S D + +T M + +I ++L GLMPNPK GTVT DVA+A++E K G +++++D Sbjct: 21 VEALDLTLKTAKANFDETIELHVRLGVDPRHADQQVRGAVVLPNGTGKTVRVLVFAKGDKAAEAQQAGADFVGADELVQKIQSENWFDYDVVVATPDMMGIVGRIGRVLGPKGLMPNPKSGTVTFDVAKAIEEIKAGKVEYRVD 164 The following BLAST results are available for this feature:
BLAST of CX288757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288757 ID=CX288757; Name=CX288757; organism=Citrus clementina; type=EST; length=538bpback to top |